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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1554 fasta sequence
[AGGGCAAATCACAAAATCTACGGGTGCCATACTATTATCGTGTAAGTGTACGGATACACACTACCAGTACACGAGAGCATACAATACCAGTCAATTAGTATTAGCCGTTTTCTCGTTCATGACTTGATGAGGTTTTGTTTTGTTTTTTTTTTATTTACATTTCATCTATTTACCCTTAATCTCACCTAGTGATTAGTTACGGTACATCAATCTCGTTTAATGTAAAACGGTAAATACTTAGTCTTCCTCTTAGCGTTCTATCTGTTTTGTGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTAAATAATTAATATATTCTTGCTTTGAACGTACGCACGCCATCTGTTCCGCGTACTCGTACTAGCACACTCAAGAAGATCCT-CCGGACAAGACCCTAGGGCCC---TTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTA-GGATATAGGATATGATAGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTGCAATGTGCAATGTGTGTTCGTCGTGCAGTGTGTGTGCACTACGACACTACGAGTATATATTATATATATTTATCAAACTAACACTGGTCAGGAGCCTTAAGCAGAAGAGGAAAGGAGAGGCCTTCTGTTACGCTGGACAAGTGAGCAGCTTCCCAAGGTGGTTTATAGCATAGAAGGTAAAGTATCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATTAGAGCCTTTCAAACAGCCTTTGAGAGCA--GTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTATATACTCAGGTGGCTGGGCGTGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTTTGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGACGAAGGGCAGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAGAACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATTCGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTTACTGTAAGAACTGTGAGCGGAAAAAAAGATATTTAGCAGTACAGTTTAAAATTCATTATCAAAACTGGATAAAATGCCTTCCTATTTGGATGAATAGGTTATAATGCATGTTACTAGTTATTTCGTCAAAAGAGAAACAAACAAACCCGAACGAAAGAGAATTTCAAAAGAAAAACAACAACGCCAAGAAGAAAGAAAACATTACTAAACAAAACATAAA]
[+] EMBL BX629012 [AGGGCAAATCACAAAATCTACGGGTGCCATACTATTATCGTGTAAGTGTACGGATACACACTACCAGTACACGAGAGCATACAATACCAGTCAATTAGTATTAGCCGTTTTCTCGTTCATGACTTGATGAGGTTTTGTTTTGTTTTTTTTTTATTTACATTTCATCTATTTACCCTTAATCTCACCTAGTGATTAGTTACGGTACATCAATCTCGTTTAATGTAAAACGGTAAATACTTAGTCTTCCTCTTAGCGTTCTATCTGTTTTGTGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTAAATAATTAATATATTCTTGCTTTGAACGTACGCACGCCATCTGTTCCGCGTACTCGTACTAGCACACTCAAGAAGATCCTCCCGGACAAGACCCTAGGGCCCTCTTTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACT ]
[+] EMBL AL932449 [ gtacttgcACGCTAAGGCCC TTTCTTCCCAGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTAGGGATATAGGATATGATAGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTGCAATGTGCAATGTGTGTTCGTCGTGCAGTGTGTGTGCACTACGACACTACGAGTATATATTATATATATTTATCAAACTAACACTGGTCAGGAGCCTTAAGCAGAAGAGGAAAGGAGAGGCCTTCTGTTACGCTGGACAAGTGAGCAGCTTCCCAAGGTGGTTTATAGCATAGAAGGTAAAGTATCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATT ]
[+] EMBL BX628659 [ AATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTA GGATATAGGATATGATAGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTGCAATGTGCAATGTGTGTTCGTCGTGCAGTGTGTGTGCACTACGACACTACGAGTATATATTATATATATTTATCAAACTAACACTGGTCAGGAGCCTTAAGCAGAAAAGGAAAGGAGAGGCCTTCTGTTACGCTGGGCAAGTGAGCAGCTTCCCAAGGTGGTTTACAGAATAGAAGGTAGAGTGTCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTGCCATTGGAACAATTAGAGCCTTTCAAACAGCCTTTGAGAGCA GTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTATATACTCAGGTGGCTGGGCGTGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTTTGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGACGAAGGGCAGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAGAACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATTCGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTT ]
[+] EMBL BX612437 [ TATCGGCTAAGGCAAACATTCAAACTGTATACCATTTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATTAGAGCCTTTCAAACAGCCTTTGAGAGCAGTGTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTATATACTCAGGTGGCTGGGCGAGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTTTGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGAGGAAGGACAGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAAAACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATTCGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTTACTGTAAGAACTGTGAGCGGAAAAAAAGATATTTAGCAGTACAGTTTAAAATTCATTATCAAAACTGGATAAAATGCCTTCCTATTTGGATGAATAGGTTATAATGCATGTTACTAGTTATTTCGTCAAAAGAGAAACAAACAAACCCGAACGAAAGAGAATTTCAAAAGAAAAACAACAACGCCAAGAAGAAAGAAAACATTACTAAACAAAACATAAA]
consensusID : consensus_6307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[GCAGAATCGGCACGTAGAGAGCGTCTACCTGGTTTTGTCGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTTAAATAATTAATATATTCTTGCTTTGAACGTACGCGCGCCATCTGTTCCGCGTACTCGTACTTGCACACTCAAGAAGATCCCCCCGACAAGACGCTAGGGCCCTCTTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGGCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATACGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGGACACCCACAGAAGCCGACTGCAATGTGCAATGTGTTGTCACGTCGTGCAGNGTGTGTGCACTACGACGACTACGAGTATATACTTCATATACTATGTATCACAACTTAACAACTGGTCAGGAGCCTTAAGCAGNAGGAAGGAACACGGANAGTGGCCTTACTGTTACGCTGGGCAAGGTTGGTGCNACGTTTCCCAAAGGTGGTTGATANGCACT]
[+] EMBL BX467514 [GCAGAATCGGCACGTAGAGAGCGTCTACCTGGTTTTGTCGTTGCGCCGGGAGTGTTACATTTGCCATGCAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTTAAATAATTAATATATTCTTGCTTTGAACGTACGCGCGCCATCTGTTCCGCGTACTCGTACTTGCACACTCAAGAAGATCCCCCCGACAAGACGCTAGGGCCCTCTTTCTTCCCGGTTAGATCTCCCATCCCTTCGTTCTTCTAAAGGCCATTTAACAGCAACAGGCTCCACAAACAGCAACAACAACAACCAAGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAATCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATACGAGGTACGATAATTGCTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGGACACCCACAGAAGCCGACTGCAATGTGCAATGTGTTGTCACGTCGTGCAGNGTGTGTGCACTACGACGACTACGAGTATATACTTCATATACTATGTATCACAACTTAACAACTGGTCAGGAGCCTTAAGCAGNAGGAAGGAACACGGANAGTGGCCTTACTGTTACGCTGGGCAAGGTTGGTGCNACGTTTCCCAAAGGTGGTTGATANGCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6307#0 AGGGCAAATCACAAAATCTACGGGTGCCATACTATTATCGTGTAAGTGTACGGATACACA 60
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 CTACCAGTACACGAGAGCATACAATACCAGTCAATTAGTATTAGCCGTTTTCTCGTTCAT 120
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 GACTTGATGAGGTTTTGTTTTGTTTTTTTTTTATTTACATTTCATCTATTTACCCTTAAT 180
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 CTCACCTAGTGATTAGTTACGGTACATCAATCTCGTTTAATGTAAAACGGTAAATACTTA 240
consensus_6307#1 --------------------------------------------GCAGAATCGGCACGTA 16
* * ** **
consensus_6307#0 GTCTTCCTCTTAGCGTTCTATCTGTTTTGT-GTTGCGCCGGGAGTGTTACATTTGCCATG 299
consensus_6307#1 GAG--------AGCGTCTACCTGGTTTTGTCGTTGCGCCGGGAGTGTTACATTTGCCATG 68
* ***** ******* *****************************
consensus_6307#0 CAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTT-AAATAATTAATA 358
consensus_6307#1 CAATCGGACTACAACGCGCATTTGTTAACCGGTTAAGATGTTTTGTTTAAATAATTAATA 128
*********************************************** ************
consensus_6307#0 TATTCTTGCTTTGAACGTACGCACGCCATCTGTTCCGCGTACTCGTACTAGCACACTCAA 418
consensus_6307#1 TATTCTTGCTTTGAACGTACGCGCGCCATCTGTTCCGCGTACTCGTACTTGCACACTCAA 188
********************** ************************** **********
consensus_6307#0 GAAGATCCTCCGGACAAGACCCTAGGGCCCT--TTCTTCCCGGTTAGATCTCCCATCCCT 476
consensus_6307#1 GAAGATCCCCCCGACAAGACGCTAGGGCCCTCTTTCTTCCCGGTTAGATCTCCCATCCCT 248
******** ** ******** ********** ***************************
consensus_6307#0 TCGTTCTTCTAAAGGCCATTTAACAGCAACAGCCTCCACAAACAGCAACAACAACAACCA 536
consensus_6307#1 TCGTTCTTCTAAAGGCCATTTAACAGCAACAGGCTCCACAAACAGCAACAACAACAACCA 308
******************************** ***************************
consensus_6307#0 AGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAA 596
consensus_6307#1 AGACCAATTTAATATTAGCTAGATTTGGATTACTGTAAACGTACTATTTAAGCGTAACAA 368
************************************************************
consensus_6307#0 TCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATA-GAGGTACGATAATTG 655
consensus_6307#1 TCGACCGAAAGCTTACTGTGAAATCTAGGATATAGGATATGATACGAGGTACGATAATTG 428
******************************************** ***************
consensus_6307#0 CTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGCACACCCACAGCAGCCGACTG 715
consensus_6307#1 CTGTAGTGCTGCATTTCAAACCCAACTGCAGCGAAACTGGACACCCACAGAAGCCGACTG 488
*************************************** ********** *********
consensus_6307#0 CAATGTGCAATGTGTGTTC--GTCGTGCAGTGTGTGTGCACTACGAC-ACTACGAGTATA 772
consensus_6307#1 CAATGTGCAATGTGTTGTCACGTCGTGCAGNGTGTGTGCACTACGACGACTACGAGTATA 548
*************** ** ********* **************** ************
consensus_6307#0 TATTATATATATT---TATCAAA--CTAACA-CTGGTCAGGAGCCTTAAGCAGAAG--AG 824
consensus_6307#1 TACTTCATATACTATGTATCACAACTTAACAACTGGTCAGGAGCCTTAAGCAGNAGGAAG 608
** * ***** * ***** * ***** ********************* ** **
consensus_6307#0 GAA----AGGAGAGGCCTT-CTGTTACGCTGGACAAG-----TGAGCAGCTTCCCAA-GG 873
consensus_6307#1 GAACACGGANAGTGGCCTTACTGTTACGCTGGGCAAGGTTGGTGCNACGTTTCCCAAAGG 668
*** ** ****** ************ **** ** * ******* **
consensus_6307#0 TGGTTTATAG-CATAGAAGGTAAAGTATCGGCTAAGGCAAACATTCAAACTGTATACCAT 932
consensus_6307#1 TGGTTGATANGCACT--------------------------------------------- 683
***** *** **
consensus_6307#0 TTTAAAAGCAAACTCATCTCGTTCACCTCCCCTCCCATTGGAACAATTAGAGCCTTTCAA 992
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 ACAGCCTTTGAGAGCAGTGTGTGTGTTTGCTGCTGCTTGGTTGGTCTTCTCAGTTGGTTA 1052
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 TATACTCAGGTGGCTGGGCGTGCTGCTTTTGGCACGAATATTTGGAAGCTTCACTTGTTT 1112
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 TGTCCCAAACCATCCACATTCCCTCTCTCTCATCTTCTTACCGCAGAGGGGACGAAGGGC 1172
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 AGGAAAGGAGGACGGCTTAATCGAACCGCCTATTCCTTCCGATCCATCCAGAAGACGAGA 1232
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 ACTGGGGATGGAGGATGCAAACAAAAATGCAAAATGTGTGAAGCTAACATCAAATCCATT 1292
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 CGAAAAGCTGCCACTAACGCCACCAAATCCATCGCATGCCTTACTGTAAGAACTGTGAGC 1352
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 GGAAAAAAAGATATTTAGCAGTACAGTTTAAAATTCATTATCAAAACTGGATAAAATGCC 1412
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 TTCCTATTTGGATGAATAGGTTATAATGCATGTTACTAGTTATTTCGTCAAAAGAGAAAC 1472
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 AAACAAACCCGAACGAAAGAGAATTTCAAAAGAAAAACAACAACGCCAAGAAGAAAGAAA 1532
consensus_6307#1 ------------------------------------------------------------
consensus_6307#0 ACATTACTAAACAAAACATAAA 1554
consensus_6307#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||