These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence [TATTAACACTACTCTCTCCAAAGACGACTCTACTGTGCTTTCTCGAACTACTGCTACACGCTCTGGGGTTTCCACTTCCGGGGATCTTCCTATGAAACTTTCCGAATCTTTCTCTATCTACGATTACGACAATGACTATGACGATGCGGTACCGAATCCTACCCGACATACGTCCACTACTACCAATGACAATGACAGTGACCGACTCACAATACTACCGCTTGACGAACATGACGGATACTTGCGACCGGAGCAGACACACTTTGAACCTCTCGTACGCCCATCCGTTTAGTACTGGACAGACTTACCGAAACTATTATGGGACAAACGAAACAACGCAAACAATACACTACGCTGACTATATGAACGGACGAACCTCTGGACCTTTGTACCGAGACGCAACAGAAAACTACCACCGATACGCACCGGCTCATCACGAGCAATTACTACTAGACGACTACTCAGACAAGTACGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAGAACGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTCAGCCGGACCAACGTGCGATACGTGACGACACANGCAAAGACAGACGAACGTCGGTGACGAAACAGAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCCTTACAGCGTAT] [+] EMBL BX627738 [TATTAACACTACTCTCTCCAAAGACGACTCTACTGTGCTTTCTCGAACTACTGCTACACGCTCTGGGGTTTCCACTTCCGGGGATCTTCCTATGAAACTTTCCGAATCTTTCTCTATCTACGATTACGACAATGACTATGACGATGCGGTACCGAATCCTACCCGACATACGTCCACTACTACCAATGACAATGACAGTGACCGACTCACAATACTACCGCTTGACGAACATGACGGATACTTGCGACCGGAGCAGACACACTTTGAACCTCTCGTACGCCCATCCGTTTAGTACTGGACAGACTTACCGAAACTATTATGGGACAAACGAAACAACGCAAACAATACACTACGCTGACTATATGAACGGACGAACCTCTGGACCTTTGTACCGAGACGCAACAGAAAACTACCACCGATACGCACCGGCTCATCACGAGCAATTACTACTAGACGACTACTCAGACAAGTACGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAGAACGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTCAGCCGGACCAACGTGCGATACGTGACGACACANGCAAAGACAGACGAACGTCGGTGACGAAACAGAAACACAAACGACCGACCAACCACCGACTGAAGACAT ] [+] EMBL BM596923 [ ccgCAGAAAACTACCACCGATACGCACCGGCTCATCACGAGCAATTACTACTAGACGACTACTCAGACAAGTACGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAGAACGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTCAGCCGGACCAACGTGCGATACGTGACGACACAGGCAAAGACAGACGAACGTCGGTGACGAAACAGAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCCTTACAGCGTAT] consensusID : consensus_6310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGGCGCGAGCATCGACGTGAAAGCGGCATAGCCAAAGAAGGACCGTGAAGGTGTGTGTGTGTGTCGAACCATTTTGTGATCAAGCAGGCAGTGCGCAACAGTTGTGATTTGGTGGCGGTCGAACCATCGTGTGTGTTCCAGTTTGTTGATTTTTTTTCTTCTGAGCGTTGGGCGAGTGGTCGGAATCCGTCGGCGGGAGAAAACAGCGAATGTGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTTTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTATGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATC] [+] EMBL BM606793 [CCGGCGCGAGCATCGACGTGAAAGCGGCATAGCCAAAGAAGGACCGTGAAGGTGTGTGTGTGTGTCGAACCATTTTGTGATCAAGCAGGCAGTGCGCAACAGTTGTGATTTGGTGGCGGTCGAACCATCGTGTGTGTTCCAGTTTGTTGATTTTTTTTCTTCTGAGCGTTGGGCGAGTGGTCGGAATCCGTCGGCGGGAGAAAACAGCGAATGTGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTTTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTATGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATC] consensusID : consensus_6310#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTGTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTAAGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCTTACAGCGTATTTTACATTATTATC] [+] EMBL BM640896 [CCGGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTGTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTAAGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCTTACAGCGTATTTTACATTATTATC] consensusID : consensus_6310#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CAGAATCGCCACGAGGTGGTAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATCGAACGAGGCCAGTTATTGCTTTGTTGTTTTTACCTATGTCTAGTGTACTAAATAGTCAATTCGACCTATAATGTGTCCCCGACAGCGATGATTATGTAGCGGCTATAAAGAGACAGAGAGAGAGAGAGCGATAGTGGGAAACATGTTTGCCAAAAAGAAACACAAGAATCATATGTCACTTCCAATTGCGGACGAGCCGCCGCTTCCGAAGTTAGGATAAGTTTAATGCAAATACGGTTAGGCTGGACGGATGGATTGGTAAAGGCAACAGCGTAGCGAATGCGCAGAGCAGCAAAGATTTGCGTAAGCCCATGCGCTTACCCGTTTCGTGTGTTTCGTATTTGTTTCTGTCTCTTCAAGTTACCTCGTTGTTGTACACGGTGTACTGATAGGCGTANAGGGGGTTTCANTCTTGTAAAAGACCGTTCATTGTGTGTCTACAACCACGTTTTNAACCAGAGAGATAGAGNAGCGAGAAGGAA] [+] EMBL BX468955 [CAGAATCGCCACGAGGTGGTAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATCGAACGAGGCCAGTTATTGCTTTGTTGTTTTTACCTATGTCTAGTGTACTAAATAGTCAATTCGACCTATAATGTGTCCCCGACAGCGATGATTATGTAGCGGCTATAAAGAGACAGAGAGAGAGAGAGCGATAGTGGGAAACATGTTTGCCAAAAAGAAACACAAGAATCATATGTCACTTCCAATTGCGGACGAGCCGCCGCTTCCGAAGTTAGGATAAGTTTAATGCAAATACGGTTAGGCTGGACGGATGGATTGGTAAAGGCAACAGCGTAGCGAATGCGCAGAGCAGCAAAGATTTGCGTAAGCCCATGCGCTTACCCGTTTCGTGTGTTTCGTATTTGTTTCTGTCTCTTCAAGTTACCTCGTTGTTGTACACGGTGTACTGATAGGCGTANAGGGGGTTTCANTCTTGTAAAAGACCGTTCATTGTGTGTCTACAACCACGTTTTNAACCAGAGAGATAGAGNAGCGAGAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6310#1 --------------------------------------------------------CCGG 4 consensus_6310#0 TATTAACACTACTCTCTCCAAAGACGACTCTACTGTGCTTTCTCGAACTACTGCTACACG 60 consensus_6310#2 ------------------------------------------------------------ consensus_6310#3 ------------------------------------------------------------ consensus_6310#1 CGCGAGCATCGACGTGAAAGCGGCATAGCCAAAGAAGGACCGTGAAGGTGTGTGTGTGTG 64 consensus_6310#0 CTCTGGGGTTTCCACTTCCGGGGATCTTCCTATGAAACTTTCCGAATCTTTCTCTATCTA 120 consensus_6310#2 ------------------------------------------------------------ consensus_6310#3 --------------CAGAATCGCCACGAGGTGGTAAGCGGGGAAGAAGCGAGAAAGAGTT 46 consensus_6310#1 TCGAACCATTTTGTGATCAAGCAGGCAGTGCGCAACAGTTGTGATTTGGTGGCGGTCGAA 124 consensus_6310#0 -CGATTACGACAATGACTATGACGATGCGGTAC--CGAATCCTACCCGACATACGTCCA- 176 consensus_6310#2 ------------------------------------------------------------ consensus_6310#3 GATAAACAGAGCGTAAACCAAAACCGAGTGAAGG--------CATTTAGTTGCATTTACA 98 consensus_6310#1 CCATCGTGTGTGTTCCAGTTTGTTGATTTTTTTTCTTCTGAGCGTTGGGCGAGTG-GTCG 183 consensus_6310#0 CTACTACCAATGACAATGACAGTGACCGACTCACAATACTACCGCTTGACGAACATGACG 236 consensus_6310#2 ------------------------------------------------------------ consensus_6310#3 ACTGAGAGGAGAGGACAG-TGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCA 157 consensus_6310#1 GAATCCGTCGGCGGGAGAAAACAG----CGAATGT---GCAGCATCCATAAATT-AACAC 235 consensus_6310#0 GATACTTGCGACCGGAGCAGACACACTTTGAACCTCTCGTA-CGCCCATCCGTTTAGTAC 295 consensus_6310#2 -----------------------------------CCGGCAGCATCCATAAATT-AACAC 24 consensus_6310#3 G--TCAGTAATCGAACGAGGCCAGTTATTGCTTTGTTGTTTTTACCTATGTCTAGTGTAC 215 * ** * ** consensus_6310#1 TG-ATAG-CTTATCG-----GTTGAAGGATAAATTATTCA--GTAGTCAAAAT-TTATAG 285 consensus_6310#0 TGGACAGACTTACCGAAACTATTATGGGACAAACGAAACAACGCAAACAATACACTACGC 355 consensus_6310#2 TG-ATAG-CTTATCG-----GTTGAAGGATAAATTATTCA--GTAGTCAAAAT-TTATAG 74 consensus_6310#3 TAAATAG--TCAAT-------TCGACCTATAATGTGTCCCCGACAGCGATGATTATGTAG 266 * * ** * * * * ** * * * * * consensus_6310#1 AAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGA 345 consensus_6310#0 TGACTATATGAACGGACGAACCTCTGGACCTTTGTACCGAGACGCAACAGAAAACTACCA 415 consensus_6310#2 AAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGA 134 consensus_6310#3 CGGCTATAAAGAGACAGAGAGAGAGAGAGCGATAGTGGGAAACA---TGTTTGCCAAAAA 323 * * * * * * * * * * * consensus_6310#1 AAGTTAGGCTTTTGCTGGGAACACATGCT-CGCTTGGCCGAAGATGATTC---ACTTGCA 401 consensus_6310#0 CCGATACGCACCGGCTCATCACGAGCAAT-TACT-ACTAGACGACTACTCAG-ACAAGTA 472 consensus_6310#2 AAGTTAGGCTGTTGCTGGGAACACATGCT-CGCTTGGCCGAAGATGATTC---ACTTGCA 190 consensus_6310#3 GAAACA--------CAAGAATCATATGTCACTTCCAATTGCGGACGAGCCGCCGCTTCCG 375 * * * * ** * * * consensus_6310#1 CCACGGAAAGTAGCCAAA---AAAAAAAAAAAATAAGGA--ACTAGTACGCTGTAGAAAG 456 consensus_6310#0 CGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAG 532 consensus_6310#2 CCACGGAAAGTAGCCAAA-----AAAAAAAAAATAAGGA--ACTAGTACGCTGTAGAAAG 243 consensus_6310#3 AAGTTAGGATAAGTTTAAT---GCAAATACGGTTAGGCTGGACGGATGGATTGGTAAAGG 432 ** *** * * * * * consensus_6310#1 CA-CAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAG-TGTGTAA-----GTA 509 consensus_6310#0 AA-CGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTC 591 consensus_6310#2 CA-CAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAG-TGTGTAA-----GTA 296 consensus_6310#3 CAACAGCGTAGCGAATGC-GCAGAGCAGCAA-AGATTTGCGTAAGCCCATGC-----GCT 485 * * * * * * * * * consensus_6310#1 AACAGGTTTGGCGGGGTTTATGGTAAAGCG-GGGAAGAAGCGAGAAAGAGTTGAT----- 563 consensus_6310#0 AGCCGGACCAACGTGCGATACGTGACGACACANGCAAAGACAGACGAACGTCGGTGACGA 651 consensus_6310#2 AACAGGTTTGGCGGGGTTTAAGGTAAAGCG-GGGAAGAAGCGAGAAAGAGTTGAT----- 350 consensus_6310#3 TACCCGTTTCGTGTGTTTCGTATTTGTTTCTGTCTCTTCAAGTTACCTCGTTGTT----- 540 * * * * ** * * consensus_6310#1 -------AAACAGAGCGTAAACCAAA-ACCGAGTGAAGGCATTTAGT-----------TG 604 consensus_6310#0 AACAGAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTG 711 consensus_6310#2 -----AAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTG 405 consensus_6310#3 ---------GTACACGGTGTACTGATAGGCGTANAGGGGGTTTCANT-------CTTGTA 584 * * ** * ** * * * * consensus_6310#1 CATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGA 664 consensus_6310#0 CCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGA 771 consensus_6310#2 CCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGA 465 consensus_6310#3 AAAGACCGTTCATTGTGTGTCTACAACC--ACGTTTTNAACCAGAGAGATAGAGNAGCGA 642 * ** * * * ** consensus_6310#1 TAAGCCAGTC--AGTAATC----------------------------------------- 681 consensus_6310#0 TGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGA 831 consensus_6310#2 TGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGA 525 consensus_6310#3 GAAGGAA----------------------------------------------------- 649 * consensus_6310#1 ------------------------------------------------------------ consensus_6310#0 GTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAG 891 consensus_6310#2 GTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAG 585 consensus_6310#3 ------------------------------------------------------------ consensus_6310#1 ------------------------------------------------------------ consensus_6310#0 CGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCCT 951 consensus_6310#2 CGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACC-T 644 consensus_6310#3 ------------------------------------------------------------ consensus_6310#1 ------------------------ consensus_6310#0 TACAGCGTAT-------------- 961 consensus_6310#2 TACAGCGTATTTTACATTATTATC 668 consensus_6310#3 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||