|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence
[TATTAACACTACTCTCTCCAAAGACGACTCTACTGTGCTTTCTCGAACTACTGCTACACGCTCTGGGGTTTCCACTTCCGGGGATCTTCCTATGAAACTTTCCGAATCTTTCTCTATCTACGATTACGACAATGACTATGACGATGCGGTACCGAATCCTACCCGACATACGTCCACTACTACCAATGACAATGACAGTGACCGACTCACAATACTACCGCTTGACGAACATGACGGATACTTGCGACCGGAGCAGACACACTTTGAACCTCTCGTACGCCCATCCGTTTAGTACTGGACAGACTTACCGAAACTATTATGGGACAAACGAAACAACGCAAACAATACACTACGCTGACTATATGAACGGACGAACCTCTGGACCTTTGTACCGAGACGCAACAGAAAACTACCACCGATACGCACCGGCTCATCACGAGCAATTACTACTAGACGACTACTCAGACAAGTACGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAGAACGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTCAGCCGGACCAACGTGCGATACGTGACGACACANGCAAAGACAGACGAACGTCGGTGACGAAACAGAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCCTTACAGCGTAT]
[+] EMBL BX627738 [TATTAACACTACTCTCTCCAAAGACGACTCTACTGTGCTTTCTCGAACTACTGCTACACGCTCTGGGGTTTCCACTTCCGGGGATCTTCCTATGAAACTTTCCGAATCTTTCTCTATCTACGATTACGACAATGACTATGACGATGCGGTACCGAATCCTACCCGACATACGTCCACTACTACCAATGACAATGACAGTGACCGACTCACAATACTACCGCTTGACGAACATGACGGATACTTGCGACCGGAGCAGACACACTTTGAACCTCTCGTACGCCCATCCGTTTAGTACTGGACAGACTTACCGAAACTATTATGGGACAAACGAAACAACGCAAACAATACACTACGCTGACTATATGAACGGACGAACCTCTGGACCTTTGTACCGAGACGCAACAGAAAACTACCACCGATACGCACCGGCTCATCACGAGCAATTACTACTAGACGACTACTCAGACAAGTACGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAGAACGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTCAGCCGGACCAACGTGCGATACGTGACGACACANGCAAAGACAGACGAACGTCGGTGACGAAACAGAAACACAAACGACCGACCAACCACCGACTGAAGACAT ]
[+] EMBL BM596923 [ ccgCAGAAAACTACCACCGATACGCACCGGCTCATCACGAGCAATTACTACTAGACGACTACTCAGACAAGTACGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAGAACGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTCAGCCGGACCAACGTGCGATACGTGACGACACAGGCAAAGACAGACGAACGTCGGTGACGAAACAGAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCCTTACAGCGTAT]
consensusID : consensus_6310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCGGCGCGAGCATCGACGTGAAAGCGGCATAGCCAAAGAAGGACCGTGAAGGTGTGTGTGTGTGTCGAACCATTTTGTGATCAAGCAGGCAGTGCGCAACAGTTGTGATTTGGTGGCGGTCGAACCATCGTGTGTGTTCCAGTTTGTTGATTTTTTTTCTTCTGAGCGTTGGGCGAGTGGTCGGAATCCGTCGGCGGGAGAAAACAGCGAATGTGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTTTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTATGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATC]
[+] EMBL BM606793 [CCGGCGCGAGCATCGACGTGAAAGCGGCATAGCCAAAGAAGGACCGTGAAGGTGTGTGTGTGTGTCGAACCATTTTGTGATCAAGCAGGCAGTGCGCAACAGTTGTGATTTGGTGGCGGTCGAACCATCGTGTGTGTTCCAGTTTGTTGATTTTTTTTCTTCTGAGCGTTGGGCGAGTGGTCGGAATCCGTCGGCGGGAGAAAACAGCGAATGTGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTTTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTATGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATC]
consensusID : consensus_6310#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTGTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTAAGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCTTACAGCGTATTTTACATTATTATC]
[+] EMBL BM640896 [CCGGCAGCATCCATAAATTAACACTGATAGCTTATCGGTTGAAGGATAAATTATTCAGTAGTCAAAATTTATAGAAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGAAAGTTAGGCTGTTGCTGGGAACACATGCTCGCTTGGCCGAAGATGATTCACTTGCACCACGGAAAGTAGCCAAAAAAAAAAAAATAAGGAACTAGTACGCTGTAGAAAGCACAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAGTGTGTAAGTAAACAGGTTTGGCGGGGTTTAAGGTAAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTGCCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGATGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGAGTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAGCGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCTTACAGCGTATTTTACATTATTATC]
consensusID : consensus_6310#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CAGAATCGCCACGAGGTGGTAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATCGAACGAGGCCAGTTATTGCTTTGTTGTTTTTACCTATGTCTAGTGTACTAAATAGTCAATTCGACCTATAATGTGTCCCCGACAGCGATGATTATGTAGCGGCTATAAAGAGACAGAGAGAGAGAGAGCGATAGTGGGAAACATGTTTGCCAAAAAGAAACACAAGAATCATATGTCACTTCCAATTGCGGACGAGCCGCCGCTTCCGAAGTTAGGATAAGTTTAATGCAAATACGGTTAGGCTGGACGGATGGATTGGTAAAGGCAACAGCGTAGCGAATGCGCAGAGCAGCAAAGATTTGCGTAAGCCCATGCGCTTACCCGTTTCGTGTGTTTCGTATTTGTTTCTGTCTCTTCAAGTTACCTCGTTGTTGTACACGGTGTACTGATAGGCGTANAGGGGGTTTCANTCTTGTAAAAGACCGTTCATTGTGTGTCTACAACCACGTTTTNAACCAGAGAGATAGAGNAGCGAGAAGGAA]
[+] EMBL BX468955 [CAGAATCGCCACGAGGTGGTAAGCGGGGAAGAAGCGAGAAAGAGTTGATAAACAGAGCGTAAACCAAAACCGAGTGAAGGCATTTAGTTGCATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCAGTCAGTAATCGAACGAGGCCAGTTATTGCTTTGTTGTTTTTACCTATGTCTAGTGTACTAAATAGTCAATTCGACCTATAATGTGTCCCCGACAGCGATGATTATGTAGCGGCTATAAAGAGACAGAGAGAGAGAGAGCGATAGTGGGAAACATGTTTGCCAAAAAGAAACACAAGAATCATATGTCACTTCCAATTGCGGACGAGCCGCCGCTTCCGAAGTTAGGATAAGTTTAATGCAAATACGGTTAGGCTGGACGGATGGATTGGTAAAGGCAACAGCGTAGCGAATGCGCAGAGCAGCAAAGATTTGCGTAAGCCCATGCGCTTACCCGTTTCGTGTGTTTCGTATTTGTTTCTGTCTCTTCAAGTTACCTCGTTGTTGTACACGGTGTACTGATAGGCGTANAGGGGGTTTCANTCTTGTAAAAGACCGTTCATTGTGTGTCTACAACCACGTTTTNAACCAGAGAGATAGAGNAGCGAGAAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6310#1 --------------------------------------------------------CCGG 4
consensus_6310#0 TATTAACACTACTCTCTCCAAAGACGACTCTACTGTGCTTTCTCGAACTACTGCTACACG 60
consensus_6310#2 ------------------------------------------------------------
consensus_6310#3 ------------------------------------------------------------
consensus_6310#1 CGCGAGCATCGACGTGAAAGCGGCATAGCCAAAGAAGGACCGTGAAGGTGTGTGTGTGTG 64
consensus_6310#0 CTCTGGGGTTTCCACTTCCGGGGATCTTCCTATGAAACTTTCCGAATCTTTCTCTATCTA 120
consensus_6310#2 ------------------------------------------------------------
consensus_6310#3 --------------CAGAATCGCCACGAGGTGGTAAGCGGGGAAGAAGCGAGAAAGAGTT 46
consensus_6310#1 TCGAACCATTTTGTGATCAAGCAGGCAGTGCGCAACAGTTGTGATTTGGTGGCGGTCGAA 124
consensus_6310#0 -CGATTACGACAATGACTATGACGATGCGGTAC--CGAATCCTACCCGACATACGTCCA- 176
consensus_6310#2 ------------------------------------------------------------
consensus_6310#3 GATAAACAGAGCGTAAACCAAAACCGAGTGAAGG--------CATTTAGTTGCATTTACA 98
consensus_6310#1 CCATCGTGTGTGTTCCAGTTTGTTGATTTTTTTTCTTCTGAGCGTTGGGCGAGTG-GTCG 183
consensus_6310#0 CTACTACCAATGACAATGACAGTGACCGACTCACAATACTACCGCTTGACGAACATGACG 236
consensus_6310#2 ------------------------------------------------------------
consensus_6310#3 ACTGAGAGGAGAGGACAG-TGGAAGATTGTAGCGCACTGAAACGCGCGCTCGATAAGCCA 157
consensus_6310#1 GAATCCGTCGGCGGGAGAAAACAG----CGAATGT---GCAGCATCCATAAATT-AACAC 235
consensus_6310#0 GATACTTGCGACCGGAGCAGACACACTTTGAACCTCTCGTA-CGCCCATCCGTTTAGTAC 295
consensus_6310#2 -----------------------------------CCGGCAGCATCCATAAATT-AACAC 24
consensus_6310#3 G--TCAGTAATCGAACGAGGCCAGTTATTGCTTTGTTGTTTTTACCTATGTCTAGTGTAC 215
* ** * **
consensus_6310#1 TG-ATAG-CTTATCG-----GTTGAAGGATAAATTATTCA--GTAGTCAAAAT-TTATAG 285
consensus_6310#0 TGGACAGACTTACCGAAACTATTATGGGACAAACGAAACAACGCAAACAATACACTACGC 355
consensus_6310#2 TG-ATAG-CTTATCG-----GTTGAAGGATAAATTATTCA--GTAGTCAAAAT-TTATAG 74
consensus_6310#3 TAAATAG--TCAAT-------TCGACCTATAATGTGTCCCCGACAGCGATGATTATGTAG 266
* * ** * * * * ** * * * * *
consensus_6310#1 AAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGA 345
consensus_6310#0 TGACTATATGAACGGACGAACCTCTGGACCTTTGTACCGAGACGCAACAGAAAACTACCA 415
consensus_6310#2 AAACAGAAGAGAAGCTCCGCCCGGTGGCACCCTTTTTAGGAAGGCTTTGTTTGGCAAAGA 134
consensus_6310#3 CGGCTATAAAGAGACAGAGAGAGAGAGAGCGATAGTGGGAAACA---TGTTTGCCAAAAA 323
* * * * * * * * * * *
consensus_6310#1 AAGTTAGGCTTTTGCTGGGAACACATGCT-CGCTTGGCCGAAGATGATTC---ACTTGCA 401
consensus_6310#0 CCGATACGCACCGGCTCATCACGAGCAAT-TACT-ACTAGACGACTACTCAG-ACAAGTA 472
consensus_6310#2 AAGTTAGGCTGTTGCTGGGAACACATGCT-CGCTTGGCCGAAGATGATTC---ACTTGCA 190
consensus_6310#3 GAAACA--------CAAGAATCATATGTCACTTCCAATTGCGGACGAGCCGCCGCTTCCG 375
* * * * ** * * *
consensus_6310#1 CCACGGAAAGTAGCCAAA---AAAAAAAAAAAATAAGGA--ACTAGTACGCTGTAGAAAG 456
consensus_6310#0 CGTTGGACTCTTACTGAACGGGGGAAAACGAGACAAGGACAATGGATCAACCCTGACCAG 532
consensus_6310#2 CCACGGAAAGTAGCCAAA-----AAAAAAAAAATAAGGA--ACTAGTACGCTGTAGAAAG 243
consensus_6310#3 AAGTTAGGATAAGTTTAAT---GCAAATACGGTTAGGCTGGACGGATGGATTGGTAAAGG 432
** *** * * * * *
consensus_6310#1 CA-CAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAG-TGTGTAA-----GTA 509
consensus_6310#0 AA-CGAAACATAATCGACCGAGAATGATTGACGGCGACGACTGGACGGGCAAAGACAGTC 591
consensus_6310#2 CA-CAATGTTTCCCCTGCCTCAAATCAGCAACACAATTGACTAG-TGTGTAA-----GTA 296
consensus_6310#3 CAACAGCGTAGCGAATGC-GCAGAGCAGCAA-AGATTTGCGTAAGCCCATGC-----GCT 485
* * * * * * * * *
consensus_6310#1 AACAGGTTTGGCGGGGTTTATGGTAAAGCG-GGGAAGAAGCGAGAAAGAGTTGAT----- 563
consensus_6310#0 AGCCGGACCAACGTGCGATACGTGACGACACANGCAAAGACAGACGAACGTCGGTGACGA 651
consensus_6310#2 AACAGGTTTGGCGGGGTTTAAGGTAAAGCG-GGGAAGAAGCGAGAAAGAGTTGAT----- 350
consensus_6310#3 TACCCGTTTCGTGTGTTTCGTATTTGTTTCTGTCTCTTCAAGTTACCTCGTTGTT----- 540
* * * * ** * *
consensus_6310#1 -------AAACAGAGCGTAAACCAAA-ACCGAGTGAAGGCATTTAGT-----------TG 604
consensus_6310#0 AACAGAAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTG 711
consensus_6310#2 -----AAACACAAACGACCGACCAACCACCGACTGAAGACATCGACCAAAAAACCGAGTG 405
consensus_6310#3 ---------GTACACGGTGTACTGATAGGCGTANAGGGGGTTTCANT-------CTTGTA 584
* * ** * ** * * * *
consensus_6310#1 CATTTACAACTGAGAGGAGAGGACAGTGGAAGATTGTAGCGCACTGAAACGCGCGCTCGA 664
consensus_6310#0 CCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGA 771
consensus_6310#2 CCATCTCGTTGGTACCATTCGTACTGCTGACCAGCATAGACAGACCAGACAACTGGGTGA 465
consensus_6310#3 AAAGACCGTTCATTGTGTGTCTACAACC--ACGTTTTNAACCAGAGAGATAGAGNAGCGA 642
* ** * * * **
consensus_6310#1 TAAGCCAGTC--AGTAATC----------------------------------------- 681
consensus_6310#0 TGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGA 831
consensus_6310#2 TGTACCATTCCAAACCATCAAAACATCGCAAACCTCCGGCGGCTGTGCCACTGCTGAAGA 525
consensus_6310#3 GAAGGAA----------------------------------------------------- 649
*
consensus_6310#1 ------------------------------------------------------------
consensus_6310#0 GTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAG 891
consensus_6310#2 GTGACACCTTTTCGCTTAGCGAGTTCCCTACTCCCATTGCCGACCCGGATTGAACTGAAG 585
consensus_6310#3 ------------------------------------------------------------
consensus_6310#1 ------------------------------------------------------------
consensus_6310#0 CGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACCCT 951
consensus_6310#2 CGTTGGCGAACGTTTCTGTCCCACTTCCTATGCATTTCCATGACTTTCCATGACTACC-T 644
consensus_6310#3 ------------------------------------------------------------
consensus_6310#1 ------------------------
consensus_6310#0 TACAGCGTAT-------------- 961
consensus_6310#2 TACAGCGTATTTTACATTATTATC 668
consensus_6310#3 ------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||