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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 805 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGGGATGAATTTCGATCGAGGAAAATAAGCTTAAGAATGGCAATGAATGTGAGAAACACATGAACAAAAGCAGAAACTATATGATATTGTAAGCGCCACATACCCAGATGGCGATGATGCGCACGAACGAAACAACACGCAAATGGGTTTAGGGTCGAAATTGCGTTCGATGAAGCGGTGAACACTTGAACACATCCAACACAACAACAACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAATTCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCAAGTCAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAACCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAAATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTGTCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACACACATAAACCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCACACCCGCCAACGCTACTCTGGCCTGCATAATGGAGGCATAAAAAAGAAAAAACAAAGCGGGCACACGCAATACACTTGATTACACCACAGCATTACACCACAATATACACCACCAATATAAACAAAACAAAACCACTATACACACACACA]
[+] EMBL BM594984 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGGGATGAATTTCGATCGAGGAAAATAAGCTTAAGAATGGCAATGAATGTGAGAAACACATGAACAAAAGCAGAAACTATATGATATTGTAAGCGCCACATACCCAGATGGCGATGATGCGCACGAACGAAACAACACGCAAATGGGTTTAGGGTCGAAATTGCGTTCGATGAAGCGGTGAACACTTGAACACATCCAACACAACAACAACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAATTCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCAAGTCAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAACCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAAATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTGTCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACACACATAAACCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCACACCCGCCAACGCTACTCTGGCCTGCATAATGGAGG ]
[+] EMBL BM657462 [ ccgCAACAACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAATTCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCAAGTCAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAACCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAAATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTGTCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACACACATAAACCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCACACCCGCCAACGCTACTCTGGCCTGCATAATGGAGGCATAAAAAAGAAAAAACAAAGCGGGCACACGCAATACACTTGATTACACCACAGCATTACACCACAATATACACCACCAATATAAACAAAACAAAACCACTATACACACACACA]
consensusID : consensus_6314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[CCGCCCACGCGTCCGATTCTTTACTATCTTCTGCCATCGTTATCGCCATACATTTGCAAATGGCTTTCATTCTCCGTCGATCGAGCTTTCTTCTGGCCGACATTGCAAGTAAATCCTCTCCGAAGGTACTTGCAAGTGGATGCCAGAAGCGCCACCTGAACGTACAAGAGCACGTATCTTACTCCTTCCTAAATGAAGCGGGAATTCCAACGCCCAAGTTTGGAGTAGCAACGTCCGGGGCAGAAGCTAAAAAAATTGCTACGGACCTTAATACAAAGAACCTGGTCTTGAAAGCCCAAGTGCTAGCTGGCGGGCGCGGAAAAGGAAGCTTTAAGAATGGGTTGAAGGGTGGTGTCCGGGTGGTGTTTTCACCCCAGGAGGCAGAAGATATTTCGGGCAAAATGATCAACCAGCTTCTCGTCACTAAACAAACGGGAGCAGCGGGACGTATTTGCAATTCTGTCATGGTGGCGGAACGAAAGTTTCCTCGCCGAGAATTCTACTTTGCCGTTATGATGGAGCGTGCTTTCAATGGACCTGTTCTAATCGCATCGTCTCAAGGAGGTGTCAACATTGAAGAAGTGGCTGCTGAAAACCCAGATGCAATTGTATACGAACCTATTGACATTAACAAAGGTCTGCAGAAGGAGCAA]
[+] EMBL BM627549 [CCGCCCACGCGTCCGATTCTTTACTATCTTCTGCCATCGTTATCGCCATACATTTGCAAATGGCTTTCATTCTCCGTCGATCGAGCTTTCTTCTGGCCGACATTGCAAGTAAATCCTCTCCGAAGGTACTTGCAAGTGGATGCCAGAAGCGCCACCTGAACGTACAAGAGCACGTATCTTACTCCTTCCTAAATGAAGCGGGAATTCCAACGCCCAAGTTTGGAGTAGCAACGTCCGGGGCAGAAGCTAAAAAAATTGCTACGGACCTTAATACAAAGAACCTGGTCTTGAAAGCCCAAGTGCTAGCTGGCGGGCGCGGAAAAGGAAGCTTTAAGAATGGGTTGAAGGGTGGTGTCCGGGTGGTGTTTTCACCCCAGGAGGCAGAAGATATTTCGGGCAAAATGATCAACCAGCTTCTCGTCACTAAACAAACGGGAGCAGCGGGACGTATTTGCAATTCTGTCATGGTGGCGGAACGAAAGTTTCCTCGCCGAGAATTCTACTTTGCCGTTATGATGGAGCGTGCTTTCAATGGACCTGTTCTAATCGCATCGTCTCAAGGAGGTGTCAACATTGAAGAAGTGGCTGCTGAAAACCCAGATGCAATTGTATACGAACCTATTGACATTAACAAAGGTCTGCAGAAGGAGCAA]
consensusID : consensus_6314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[GGCAGAATCCGCACGANNGGTGATGTGTGACTACCCCCTAAATTTAAGCATATTAATAAGGGGAGGAAGAGAAACCAACCGGGATTCCCTGAGTAGCTGCGAGCGAAACGGGAAGAGCTCAGCACGTAGGGACGGCATGGAAACGTGCCTGTCCGATTCCGTGTACTGGACCGGTCCGTTATCTATCACGCACTGTGCACTTCAAGTTCAACTTGAAGGTGGCCCATTCTCCCATAGAGGGTGATAGGCCCGTGGAAAGGCATGAGGTGAGGTGATAGACGGTCGGCTCCATGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCAGTAGCAGCAACATAAGGAGAGGGAACAAGCGCGAACAGGCAAAGTGCATACGCATACAAATTATATACACCGTAGCTTTAAGGACTTGTAACGGTAGCATCTAAGGGCTGTAAAGCTGTAAAGAGAGCGTCAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGGACCCGAACAATGCGCACTCATCCCAAGACACCAGACCCACAATTTTGCGAACCGAGCACACACNACGCCGCATACACATACGTAGATAGCACGT]
[+] EMBL BX468275 [GGCAGAATCCGCACGANNGGTGATGTGTGACTACCCCCTAAATTTAAGCATATTAATAAGGGGAGGAAGAGAAACCAACCGGGATTCCCTGAGTAGCTGCGAGCGAAACGGGAAGAGCTCAGCACGTAGGGACGGCATGGAAACGTGCCTGTCCGATTCCGTGTACTGGACCGGTCCGTTATCTATCACGCACTGTGCACTTCAAGTTCAACTTGAAGGTGGCCCATTCTCCCATAGAGGGTGATAGGCCCGTGGAAAGGCATGAGGTGAGGTGATAGACGGTCGGCTCCATGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCAGTAGCAGCAACATAAGGAGAGGGAACAAGCGCGAACAGGCAAAGTGCATACGCATACAAATTATATACACCGTAGCTTTAAGGACTTGTAACGGTAGCATCTAAGGGCTGTAAAGCTGTAAAGAGAGCGTCAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGGACCCGAACAATGCGCACTCATCCCAAGACACCAGACCCACAATTTTGCGAACCGAGCACACACNACGCCGCATACACATACGTAGATAGCACGT]
consensusID : consensus_6314#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[TAGAGAAAGAAGTTGCAAAGTGCACGCTGTGCTGTCCTGCGTTGCAACTAGACTGCATCCTTTTCGGATGATGAAACGTAAGAAGGAGGAGAGGGAGGTTGAGGCGCAGTAGTTATGAGAAGAGAAATGGGTGAACAGTAATACTACTCTACTACTACTACTGCTACTATTATTACTTAAGGTAAAGGAAAGGAAGCAAAAAAGAATGATGTCGAAAAGTATCCGTCTGCTTGAGAAAGGGGAAACGAAACAGAGAGAGAGCGAGAGAGAGAAAGGAAAGCAAAAGAAAGGATTGGAAATGATGTGCACATTATATGAAAGTATTTGAAAGTCAGAAAGCGTAAGAACTCTACCCCCTCCCGTGTCTTTACACGTTGCTACCAACACGACGACCGGTACGTTATGATTCCCAATATCACTGTTTTACTGGTTTCATATGTTACGTCCTGGTTCCGATATGTATTGTGCATTAGTAACCCCTTCCTCCCTCC]
[+] EMBL BX611791 [TAGAGAAAGAAGTTGCAAAGTGCACGCTGTGCTGTCCTGCGTTGCAACTAGACTGCATCCTTTTCGGATGATGAAACGTAAGAAGGAGGAGAGGGAGGTTGAGGCGCAGTAGTTATGAGAAGAGAAATGGGTGAACAGTAATACTACTCTACTACTACTACTGCTACTATTATTACTTAAGGTAAAGGAAAGGAAGCAAAAAAGAATGATGTCGAAAAGTATCCGTCTGCTTGAGAAAGGGGAAACGAAACAGAGAGAGAGCGAGAGAGAGAAAGGAAAGCAAAAGAAAGGATTGGAAATGATGTGCACATTATATGAAAGTATTTGAAAGTCAGAAAGCGTAAGAACTCTACCCCCTCCCGTGTCTTTACACGTTGCTACCAACACGACGACCGGTACGTTATGATTCCCAATATCACTGTTTTACTGGTTTCATATGTTACGTCCTGGTTCCGATATGTATTGTGCATTAGTAACCCCTTCCTCCCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6314#2 ------------------------------GGCAGAATCCGCACGANNGGTGATGTGTGA 30
consensus_6314#3 ------------------------------------------------------------
consensus_6314#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGGGATGAATTTCGATCGAGGAAAATAAG 60
consensus_6314#1 --------------------------------------CCGCCCACGCGTCCGATTCTTT 22
consensus_6314#2 CTACCCCCTAAATTTAAGCATATTAATAAGGGGAGGAAGAGAAACCAACCGGGATTCCCT 90
consensus_6314#3 ------------------------------------------------------------
consensus_6314#0 CTTAAGAATGGCAATGAATGTGAGAAACACATGAACAAAAGCAGAAACTATATGATATTG 120
consensus_6314#1 ACTATCTTCTGCCATCGTTATCGCCATACATTTGCAAATGGCTTTCATTCTCCGTCGATC 82
consensus_6314#2 GAGTAGCTGCGAGCGAAACGGGAAGAGCTCAGCACGTAGGGACGGCA-TGGAAACGTGCC 149
consensus_6314#3 ------------------------------------TAGAGAAAGAAGTTGCAAAGTGCA 24
consensus_6314#0 TAAGCGCCACATACCCAGATGGCGATGATGCGCACGAACGAAACAACACGCAAATGGGTT 180
consensus_6314#1 GAGCTTTCTTCTGGCCGACATTGCAAGTAAATCCTCTCCGAAGGTACTTGCAAGTGGATG 142
* * *
consensus_6314#2 T---GTC-CGATTCCGTGTACTGGACCGGTCCGTTATCTATCACGCACTGTGCACTTCAA 205
consensus_6314#3 C---GCTGTGCTGTCCTGCGTTGCAACTAGACTGCATCCTTTTCGGATGATGAAACGTAA 81
consensus_6314#0 TAGGGTCGAAATTGCGTTCGATGAAGCGGTGAACACTTGAACACATCCAACACAACAACA 240
consensus_6314#1 C----CAGAAGCGCCACCTGAACGTACAAGAGCACGTATCTTACTCCTTCCTAAATGAAG 198
* * * * *
consensus_6314#2 GTTCAACTTGAAGGTGGCCCATTCTCCCATAGAGGGTGATAGGCCCG------TGGAAAG 259
consensus_6314#3 GAAGGAGGAGAGGGAGGTTGAGGCGC-----AGTAGTTATGAG--AA------GAGAAAT 128
consensus_6314#0 ACAAAATAACACGCATCTACACTCTCTCTCTCTCACACACACGCACACTCCGTTTGTAAT 300
consensus_6314#1 CGGGAATTCCA---ACGCCCAAGTTTGGAGTAGCAACGTCCGGGGCAGAAGCTAAAAAAA 255
* * * * **
consensus_6314#2 GCATGAGGTGAGG-TGAT---AGACGGTCGGCTCCATGG--AGTCGTGTTGCTTGATAGT 313
consensus_6314#3 GGGTGAACAGTAA-TACT---ACTCTACTACTACTACTGCTACTATTATTACTTAA-GGT 183
consensus_6314#0 TCGTTAGAAGAAGGTAATCGAACTCGTTTCGCACTTTCTGTAACCTTTTTGTTTCA-AGT 359
consensus_6314#1 TTGCTA-CGGACCTTAATACAAAGAACCTGGTCTTGAAAGCCCAAGTGCTAGCTGGCGGG 314
* * * * * * * * *
consensus_6314#2 GCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGC 373
consensus_6314#3 AAAGGAAAGGAAGCAAAAAAGAATGATGTCGAA---AAGTATCCGTCTGCTTGAGAAAGG 240
consensus_6314#0 -CAGCAGCATATTGGCACCAACGCTCAATCATCATCCGTTGTACAATCGCAACCGAACAA 418
consensus_6314#1 CGCGGAAAAGGAAGCTTTAAGAATGG-GTTGAAGGGTGGTGTCCGGGTGGTGTTTTCACC 373
* * * * *
consensus_6314#2 AGTAGCAGCAACATAAGGAGAGGGAACAAGCGCGAACAGGCAAAGTGCATACGCATACAA 433
consensus_6314#3 GGAAAC-GAAACAGAGAGAGAGCGAGAGAGAGAAAGGAAAGCAAAAGAA-AGGATTGGAA 298
consensus_6314#0 CCATTCAATTACTGCTACAAAGCACGCGGCGGCATGTGGCGTAAGTCAAGCAGAGACAAA 478
consensus_6314#1 CCAGGAGGCAGAAGATATTTCGGGCAAAATGATCAACCAGCTTCTCGTCACTAAACAAAC 433
* *
consensus_6314#2 ATTATATACACCGTAGCTTTAAGGACTTGTAA-CGGTAGCATCTAAGGGCTGTAAAGCTG 492
consensus_6314#3 ATGATGTGCACATTATATGAAAGTATTTGAAAGTCAGAAAGCGTAAGAACTCTACCCCCT 358
consensus_6314#0 ATTCACTAATCTAAGCGCCTAAGTATATGTTTTAGAAATGGTTAAGTAATTACAGTTGTG 538
consensus_6314#1 GGGAGCAGCGGGACGTATTTGCAATTCTGTCATGGTGGCGGAACGAAAGTTTCCTCGCCG 493
** *
consensus_6314#2 TAAAGAGAGCGTCAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGGACCCGAACAATGCGCA 552
consensus_6314#3 CCC-----GTGTCTTTACACGTTGCTACCAACACGACGACCGGTACGTTA-TGATTCCCA 412
consensus_6314#0 TCCTTAGTTTTTACGTACGAGCTACAACAAACAAATAATCAAACACACAC---ACATAAA 595
consensus_6314#1 AGAATTCTACTTTGCCGTTATGATGGAGCGTGCTTTCAATGGACCTGTTCTAATCGCATC 553
* *
consensus_6314#2 CTCATCCCAAGACACCAGACCCACAA---TTTTGCGAACCGAG-CACACACNACGCCGCA 608
consensus_6314#3 ATATCACTGTTTTACTGGTTTCATA----TGTTACGTCCTGGT-TCCGATATGTATTGTG 467
consensus_6314#0 CCTACCCCTTTCCATTACTCTCACACAACTTTCGCAGCAAGAAACACCTACAAAATCGCA 655
consensus_6314#1 GTCTCAAGGAGGTGTCAACATTGAAGA--AGTGGCTGCTGAAAACCCAGATGCAATTGTA 611
* * * * *
consensus_6314#2 TACACATACGTAGATAGCACGT-------------------------------------- 630
consensus_6314#3 CATTAGTAACCCCTTCCTCCCTCC------------------------------------ 491
consensus_6314#0 CACCCGCCAACGCTACTCTGGCCTGCATAATGGAGGCATAAAAAAGAAAAAACAAAGCGG 715
consensus_6314#1 TACGAACCTATTGACATTAACAAAGGTCTGCAGAAGGAGCAA------------------ 653
*
consensus_6314#2 ------------------------------------------------------------
consensus_6314#3 ------------------------------------------------------------
consensus_6314#0 GCACACGCAATACACTTGATTACACCACAGCATTACACCACAATATACACCACCAATATA 775
consensus_6314#1 ------------------------------------------------------------
consensus_6314#2 ------------------------------
consensus_6314#3 ------------------------------
consensus_6314#0 AACAAAACAAAACCACTATACACACACACA 805
consensus_6314#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||