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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 852 fasta sequence
[CCGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAACATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG---G-GTGTGTGTATGTGTGTGTAATT-GGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGT-AGGTATGGATTGGGATAATGAGAAGCGTGTAAGGATGAAATAGAAGAAGCGATGTCCTTCTTGGCTCTTGTATCTCCTTCTCCATTCCCATTGTGTAATTTTGTGTACTATACATATATACATAATATCTATGCAAATATTACTATTACTACTATTACTACTACTACTATAACTCTACCTGCCCTCTTTCCCTAAATGATATATTTAACAAGAAAGACGACGGTTAAGATCGGTG]
[+] EMBL BM616983 [CCGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAACATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG G GTGTGTGTATGTGTGTGTAATTGGGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGGGTCTGTGTGTGT AGGTATGGATTGG ]
[+] EMBL BM648875 [ ccgAGAAAACATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAGAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG G GTGTGTGTATGTGTGTGTAATT GGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGTAAGGTA ]
[+] EMBL BM623175 [ ccGCAACAATTTAAAGGAACGGAAAGATTTGATGAGAGGACTTTTAAGACAGAGGGTCCCGTTTGTGTGTGTGTGTGTGTGTGTGTGTAATT GGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGT AGGTATGGATTGGGATAATGAGAAGCGTGTAAGGATGAAATAGAAGAAGCGATGTCCTTCTTGGCTCTTGTATCTCCTTCTCCATTCCCATTGTGTAATTTTGTGTACTATACATATATACATAATATCTATGCAAATATTACTATTACTACTATTACTACTACTACTATAACTCTACCTGCCCTCTTTCCCTAAATGATATATTTAACAAGAAAGACGACGGTTAAGATCGGTG]
consensusID : consensus_6315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence
[AATCGCCCGAGGTTAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGGCCAACATGCTTTATCATACTACTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGATGGTACAATTACTAAGTGTCCACGAGCAGCCACAACAACGAGTGGCTGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGACAACGTAACANAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGACTGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTGTGGTGTGTGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGTAGGTACTGGATCGGGTCAATGAGAAGCGTGTAACGGCAAAATGGCAANANCCGNATGTCCTTCTTTGCTACTTGTCTCCTCTCCATCCCATNGNAGCTAATTGTGTACTATACCATATATACNTAACTNATCTNATGNGCNNATAATGACGTAATGNACTACTAATTACGTACGTAATATAANCTTATAACCTGTCCTCCTTTCCGCTAAANGGAACATATTAACCAGAGCAAGCACCGCACGNGNCANNATCAGGGNCCGCTTCCNATTGGNCTCCCCCTTTNATACGAAGTGGCGACNACGGGTCANNACGACAANNAAAAACANCGGACAG]
[+] EMBL AL931063 [AATCGCCCGAGGTTAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGGCCAACATGCTTTATCATACTACTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGATGGTACAATTACTAAGTGTCCACGAGCAGCCACAACAACGAGTGGCTGAAGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGACAACGTAACANAGGGAGGTTAAAGAAGCGCAAAAGTGAACAAAGCAACAATTTAAAGGAACGGAAAGATTTGACTGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTGTGGTGTGTGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGACAACTACTGTCTGATGGTGTGTCTGTGTGTGTAGGTACTGGATCGGGTCAATGAGAAGCGTGTAACGGCAAAATGGCAANANCCGNATGTCCTTCTTTGCTACTTGTCTCCTCTCCATCCCATNGNAGCTAATTGTGTACTATACCATATATACNTAACTNATCTNATGNGCNNATAATGACGTAATGNACTACTAATTACGTACGTAATATAANCTTATAACCTGTCCTCCTTTCCGCTAAANGGAACATATTAACCAGAGCAAGCACCGCACGNGNCANNATCAGGGNCCGCTTCCNATTGGNCTCCCCCTTTNATACGAAGTGGCGACNACGGGTCANNACGACAANNAAAAACANCGGACAG]
consensusID : consensus_6315#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCCCGGAGTTANATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGCAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAACGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACACAAGCAACCAATTTCACAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTANGGGTGTGATGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAAAAGATAACTACTGTCTGAATGGTGTGTCTGTGTGTGTAGGTATGGATT]
[+] EMBL AL692649 [CCCCGGAGTTANATGCTGAAAAAGCATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAATGAAAGAGAGAGAAGGAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTTTCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGCCAACATGCTTTATCATCTCTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATACATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGCAGGTACAATTACTAAGTGTCCAGAGCAGCCACAACAACGAGTGGCGAACGAAGAAAACAAATGTCCTTTGTGCAGAGAAGGAAACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACACAAGCAACCAATTTCACAAGGAACGGAAAGATTTGATGAGAGGACTGTTAAGAGAGAGGGTCCCGTTANGGGTGTGATGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAAAAGATAACTACTGTCTGAATGGTGTGTCTGTGTGTGTAGGTATGGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6315#0 CCGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAACATGCTGAAAAAG 60
consensus_6315#2 ------------------------------------CCCCGGAGTTANATGCTGAAAAAG 24
consensus_6315#1 ------------------------------------------------------------
consensus_6315#0 CATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAAT 120
consensus_6315#2 CATGTTTTCTCATCCAAGCAACTCGGTGCCATTTTGTTTCGTAGTTAAGGGAACGAAAAT 84
consensus_6315#1 ------------------------------------------------------------
consensus_6315#0 GAAAGAGAGAGAAGG-AGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTT 179
consensus_6315#2 GAAAGAGAGAGAAGG-AGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTT 143
consensus_6315#1 --AATCGCCCGAGGTTAGAGAGTGACAGTGAAAGACGATGCATAGTAGGCGCTTTGTTTT 58
** * ** * ********************************************
consensus_6315#0 TCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCG-CCAACATGCTTT 238
consensus_6315#2 TCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCG-CCAACATGCTTT 202
consensus_6315#1 TCCTCTGCTTTCCTCTCAATCACATTTGCGCTGTCTCTGTACTCTCGGCCAACATGCTTT 118
*********************************************** ************
consensus_6315#0 ATCATCT--CTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATA 296
consensus_6315#2 ATCATCT--CTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATA 260
consensus_6315#1 ATCATACTACTTGTGCTGCTTCTGCTAAAAAAAACGACATATATTCATCAAACACACATA 178
***** ***************************************************
consensus_6315#0 CATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCG-AGGTACAATTACTA 355
consensus_6315#2 CATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGCAGGTACAATTACTA 320
consensus_6315#1 CATACTAAAAAAAAACAACAAACATTTAACTAACAGAAAAATTCGATGGTACAATTACTA 238
********************************************* *************
consensus_6315#0 AGTGTCCA-GAGCAGCCACAACAACGAGTGGCGAA-GAAGAAAACAAATGTCCTTTGTGC 413
consensus_6315#2 AGTGTCCA-GAGCAGCCACAACAACGAGTGGCGAACGAAGAAAACAAATGTCCTTTGTGC 379
consensus_6315#1 AGTGTCCACGAGCAGCCACAACAACGAGTGGCTGAAGAAGAAAACAAATGTCCTTTGTGC 298
******** *********************** * ************************
consensus_6315#0 AGAGAAGGA-AACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACA-AAGCAAC-A 470
consensus_6315#2 AGAGAAGGA-AACGTAACAAAGGGAGGTTAAAGAAGCGCAAAAGTGAACACAAGCAACCA 438
consensus_6315#1 AGAGAAGGACAACGTAACANAGGGAGGTTAAAGAAGCGCAAAAGTGAACA-AAGCAAC-A 356
********* ********* ****************************** ******* *
consensus_6315#0 ATTTAA--AGGAACGGAAAGATTTGA-TGAGAGGACTGTTAAGAGAGAGGGTCCCGTT-T 526
consensus_6315#2 ATTTCACAAGGAACGGAAAGATTTGA-TGAGAGGACTGTTAAGAGAGAGGGTCCCGTTAN 497
consensus_6315#1 ATTTAA--AGGAACGGAAAGATTTGACTGAGAGGACTGTTAAGAGAGAGGGTCCCGTTTG 414
**** * ****************** *******************************
consensus_6315#0 GGGTGTG-TGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGA 585
consensus_6315#2 GGGTGTGATGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAA-AAGA 556
consensus_6315#1 TGGTGTG-TGTATGTGTGTGTAATTGGGGAAAAGCTTTTACATTTCGATGTACAACAAGA 473
****** *********************************************** ****
consensus_6315#0 CAACTACTGTCTGA-TGGTGTGTCTGTGTGTGTAGGTA-TGGATTGGGATAATGAGAAGC 643
consensus_6315#2 TAACTACTGTCTGAATGGTGTGTCTGTGTGTGTAGGTA-TGGATT--------------- 600
consensus_6315#1 CAACTACTGTCTGA-TGGTGTGTCTGTGTGTGTAGGTACTGGATCGGGTCAATGAGAAGC 532
************* *********************** *****
consensus_6315#0 GTGTAAGGATGAAATAGAAGAAGC--GATGTCCTTCTTGGCT-CTTGTATCTCCTTC-TC 699
consensus_6315#2 ------------------------------------------------------------
consensus_6315#1 GTGTAACGGCAAAATGGCAANANCCGNATGTCCTTCTTTGCTACTTGTCTCCTCTCCATC 592
consensus_6315#0 CATTCCCATTGTGTAATTTTGTGTACTATACATATATACATAATATC-TATGCAAATATT 758
consensus_6315#2 ------------------------------------------------------------
consensus_6315#1 CCATNGNAGCTAATTGTGTACTATACCATATATACNTAACTNATCTNATGNGCNNATAAT 652
consensus_6315#0 ACTAT----TACTACTATTACTACTACTACTATAACTCTA---CCTGCCCTCTTTCCC-- 809
consensus_6315#2 ------------------------------------------------------------
consensus_6315#1 GACGTAATGNACTACTAATTACGTACGTAATATAANCTTATAACCTGTCCTCCTTTCCGC 712
consensus_6315#0 TAAATGATATAT-TTAACAAGAAAGACGACGGTTAAGATCGGTG---------------- 852
consensus_6315#2 ------------------------------------------------------------
consensus_6315#1 TAAANGGAACATATTAACCAGAGCAAGCACCGCACGNGNCANNATCAGGGNCCGCTTCCN 772
consensus_6315#0 ------------------------------------------------------------
consensus_6315#2 ------------------------------------------------------------
consensus_6315#1 ATTGGNCTCCCCCTTTNATACGAAGTGGCGACNACGGGTCANNACGACAANNAAAAACAN 832
consensus_6315#0 -------
consensus_6315#2 -------
consensus_6315#1 CGGACAG 839
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||