cluster # 6319

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Anopheles gambiae
cluster # 6319 cluster # 6319 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6319#0 length = 1086 sequences # 3

consensus_6319#1 length = 744 sequences # 1
consensus_6319#2 length = 238 sequences # 1

consensusID : consensus_6319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1086
fasta sequence

                              [CATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCTTCAAGACTGTTATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGTACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCACAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGCCTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATGGTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATCTCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTACAGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAACGGGTGATTCGGTCACGGTTGGTCTTCGAGAGAAATATTCGACCGTACGAGACAAAGATAGTTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTGTTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATTAGCATGGAGAGAAGAATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCGGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGACCGGTAAACAC]

[+] EMBL CNS09OAL             [CATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCTTCAAGACTGTTATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGTACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCACAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGCCTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATGGTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATCTCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTACAGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAACGGGTGATTCGGTCACGGTTGGTCTTCGAGAGAAATATTCGACCGTACGAGACAAAGATAGTTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTGTTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATTAGCATGGAGAGAAGAATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCGGCCGACGGTA                                                                                                                                                                                                 ]
[+] EMBL AGA281888            [                                              TTATCCATAAAGCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGTACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS09OAK             [                                                                                                                                                                                                              CGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCACAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGCCTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATGGTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATCTCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTACAGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAACGCGTGATTCGGTCACGGTTGGTCTTCGAGAGAGATATTCGACCGTACGAGACAAAGATAGTTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTGTTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATCAGCATGGAGAGAAGAATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCGGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGACCGGTAAACAC]




>consensus_6319#0
CATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCC
CCCTTCAAGACTGTTATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAA
TTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACT
CAGTGTCGTCCAGCATAGAAGGTGTACGATTTGGATGATTTCGTATGCTCGTTTCGTCTC
TTCTGCCCAAAGGGGATTTGTATGGTTCATAATAATGAAAATTCATCCTAGCCTGAGCGG
GATTTACTTAAAGACATACTTTCACAGCAAATTCAGTAAATGATAGTGTGAAAAAATATG
TGATTCACAACAAAAGGAAATGGCCTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATG
GTGCTGGAGAAAATAACGGCGATGGTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCAT
TTATCTACCAACTCATGGTCCATCTCACTGCAATCTGTACGAATAACCACCTCCTCTCGA
ATGCTTGTCCCCTCGCTTACGTACAGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACA
TGTTGCGTATTCGTCACTTCTAACGGGTGATTCGGTCACGGTTGGTCTTCGAGAGAAATA
TTCGACCGTACGAGACAAAGATAGTTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAA
CCGCTTCCGAGCGTTTTCCTGGTGTTTCTGATAGAACATAATGCCTATCACAACCAACAC
AACGACTATTAGCATGGAGAGAAGAATAAGGAAGAATATTTTCACATTCGACATGCCAGG
CTTTGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCGGCCGACGGTACGATCTG
ACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGAT
ATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGG
CAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGACCGGT
AAACAC

consensusID : consensus_6319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 744
fasta sequence

                              [AAAGGTGGNATTCCGGTTCACACGGGTTGGTNGNTTTCCGNAGGAGGAGNATAATTGGCCCGNTAACGAAGGATCNGAAGGAATAGGTTTTGGCGCATGGCTGAAAGCAGTGGTGCGCGTTGTTAAGGTAGAAGCCGGGTTTTCCCGAGCGGTTTTCGTTGGGTTGTTCTCCTTGGATAAGACATAATGCCCGTATCGACGAACCCTACAGCAACGACTATCAGCATGGACGAGAAGAATAAGGAAGAATATCTTCTTACGTTCGACATGCCAGGCTTGGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCTGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGATCGGTAAACACGGTCAGCACATCGTTCTCGTACCGGATGTTGATCTGCGTGTCAAATTCCACATTCCGGAATTTGGCCTCGCATCCTGCTATCTGGGTGTGCGTCCCGTCACGATCGTGATCGTACGAAAGGCTACCATTATTCACCATGGCACTAATGTACGGGTGCTGGTGGTTATGCGGACCGTTGTGGTTGCTGTACGTGTCCAGGATGATGCGTCCACGTGCCGATCTG]

[-] EMBL BX469810             [AAAGGTGGNATTCCGGTTCACACGGGTTGGTNGNTTTCCGNAGGAGGAGNATAATTGGCCCGNTAACGAAGGATCNGAAGGAATAGGTTTTGGCGCATGGCTGAAAGCAGTGGTGCGCGTTGTTAAGGTAGAAGCCGGGTTTTCCCGAGCGGTTTTCGTTGGGTTGTTCTCCTTGGATAAGACATAATGCCCGTATCGACGAACCCTACAGCAACGACTATCAGCATGGACGAGAAGAATAAGGAAGAATATCTTCTTACGTTCGACATGCCAGGCTTGGGATCGTCTTTGTGTTCGCGCGGTGCTTCGAATGTAGCTGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGACGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCTGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAGCACTCTTTCCATGTGGCCTTGTTTTCCAGATCGGTAAACACGGTCAGCACATCGTTCTCGTACCGGATGTTGATCTGCGTGTCAAATTCCACATTCCGGAATTTGGCCTCGCATCCTGCTATCTGGGTGTGCGTCCCGTCACGATCGTGATCGTACGAAAGGCTACCATTATTCACCATGGCACTAATGTACGGGTGCTGGTGGTTATGCGGACCGTTGTGGTTGCTGTACGTGTCCAGGATGATGCGTCCACGTGCCGATCTG]




>consensus_6319#1
AAAGGTGGNATTCCGGTTCACACGGGTTGGTNGNTTTCCGNAGGAGGAGNATAATTGGCC
CGNTAACGAAGGATCNGAAGGAATAGGTTTTGGCGCATGGCTGAAAGCAGTGGTGCGCGT
TGTTAAGGTAGAAGCCGGGTTTTCCCGAGCGGTTTTCGTTGGGTTGTTCTCCTTGGATAA
GACATAATGCCCGTATCGACGAACCCTACAGCAACGACTATCAGCATGGACGAGAAGAAT
AAGGAAGAATATCTTCTTACGTTCGACATGCCAGGCTTGGGATCGTCTTTGTGTTCGCGC
GGTGCTTCGAATGTAGCTGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGAC
GGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCT
GTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAG
CACTCTTTCCATGTGGCCTTGTTTTCCAGATCGGTAAACACGGTCAGCACATCGTTCTCG
TACCGGATGTTGATCTGCGTGTCAAATTCCACATTCCGGAATTTGGCCTCGCATCCTGCT
ATCTGGGTGTGCGTCCCGTCACGATCGTGATCGTACGAAAGGCTACCATTATTCACCATG
GCACTAATGTACGGGTGCTGGTGGTTATGCGGACCGTTGTGGTTGCTGTACGTGTCCAGG
ATGATGCGTCCACGTGCCGATCTG

consensusID : consensus_6319#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [CACTCTTGTATGTTCATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTACACCTTCTATGCTGGACGCCCACGCGTCCGCGG]

[-] EMBL BM587113             [CACTCTTGTATGTTCATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCCTTATCCATAAAGCCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGCTAAGATTAATAACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTACACCTTCTATGCTGGACGCCCACGCGTCCGCGG]




>consensus_6319#2
CACTCTTGTATGTTCATCGTTCGATTTTATTGGACAATTGTTAACCTACCACTTATTTCC
TTATCCATAAAGCCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGCTAAGATTAATA
ACCGGAAATCCATAATTATAATTCATGCATACAACACAAAAACAAAGACTGCAGTCCTTT
AAAAATCCACACACTCAGTGTCGTACACCTTCTATGCTGGACGCCCACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6319#0      ------------------------------------------------------------
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      AAAGGTGGNATTCCGGTTCACACGGGTTGGTNGNTTTCCGNAGGAGGAGNATAATTGGCC 60
                                                                                  

consensus_6319#0      --------------CATCGT---TCGATTTTATTGGACAATTGTTAACC----TACCACT 39
consensus_6319#2      CACTCTTGTATGTTCATCGT---TCGATTTTATTGGACAATTGTTAACC----TACCACT 53
consensus_6319#1      CGNTAACGAAGGATCNGAAGGAATAGGTTTTGGCGCATGGCTGAAAGCAGTGGTGCGCGT 120
                                    *        * * ****   * *    **  * *     * *   *

consensus_6319#0      TATTTCCTTATCCATAAAGCCCCC-TTCAAGACTGTTATTCAGTAGGAATACACGC-TAA 97
consensus_6319#2      TATTTCCTTATCCATAAAGCCCCCCTTCAAGACTGTGATTCAGTAGGAATACACGC-TAA 112
consensus_6319#1      TGTTAAGGTAGAAGCCGGGTTTTCCCGAGCGGTTTTCGTTGGGTTGTTCTCCTTGGATAA 180
                      * **    **        *    *      *  * *  **  ** *   * *  *  ***

consensus_6319#0      GAT-TAATAACCG-------GAAATCCATAATTATAATTCAT-GCATACAACACAAAAAC 148
consensus_6319#2      GAT-TAATAACCG-------GAAATCCATAATTATAATTCAT-GCATACAACACAAAAAC 163
consensus_6319#1      GACATAATGCCCGTATCGACGAACCCTACAGCAACGACTATCAGCATGGACGAGAAGAAT 240
                      **  ****  ***       ***  * * *   *  * *    ****  *  * ** ** 

consensus_6319#0      AAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTCCAGCATAGAAGGTGT--- 205
consensus_6319#2      AAAGACTGCAGTCCTTTAAAAATCCACACACTCAGTGTCGTACACCTTCTATGCTGG--- 220
consensus_6319#1      AAGGAAGAATATCTTCTTACGTTCGACATGCCAGGCTTGGGATCGTCTTTGTGTTCGCGC 300
                      ** **      ** * * *   ** ***  *   *  * *       *    * *     

consensus_6319#0      -ACGATTTGGATGATTTCGTATGCTCGTTTCGTCTCTTCTGCCCAAAGGGGATTTGTATG 264
consensus_6319#2      -ACGCCC---ACGCGTCCGCGG-------------------------------------- 238
consensus_6319#1      GGTGCTTCGAATGTAGCTGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGAC 360
                         *      * *     *                                         

consensus_6319#0      GTTCATAATAATGAAAATTCATCCTAGCCTGAGCGGGATTTACTTAAAGACATACTTTCA 324
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      GGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCCT 420
                                                                                  

consensus_6319#0      CAGCAAATTCAGTAAATGATAGTGTGAAAAAATATGTGATTCACAACAAAAGGAAATGGC 384
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      GTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAAG 480
                                                                                  

consensus_6319#0      CTCTCTCTGCAGTCATGGTGATGAAGAGCAGAAATGGTGCTGGAGAAAATAACGGCGATG 444
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      CACTCTTTCCATGTGGCCTTGTTTTCCAGATCGGTAAACACGGTCAGCACATCGTTCTCG 540
                                                                                  

consensus_6319#0      GTTATGTTTGTTTTTCTTCGCTTTTCGTTTAATCATTTATCTACCAACTCATGGTCCATC 504
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      TACCGGATGTTGATCTGCGTGTCAAATTCCACATTCCGGAATTTGGCCTCGCATCCTGCT 600
                                                                                  

consensus_6319#0      TCACTGCAATCTGTACGAATAACCACCTCCTCTCGAATGCTTGTCCCCTCGCTTACGTAC 564
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ATCTGGGTGTGCGTCCCGTCACGATCGTGATCGTACGAAAGGCTACCATTATTCACCATG 660
                                                                                  

consensus_6319#0      AGCAATTTGTCTAAATGTTCTGATTTGTTTGGTACATGTTGCGTATTCGTCACTTCTAAC 624
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      GCACTAATGTACGGGTGCTGGTGGTTATGCGGACCGTTGTGGTTGCTGTACGTGTCCAGG 720
                                                                                  

consensus_6319#0      GGGTGATTCGGTCACGGTTGGTCTTCGAGAGAAATATTCGACCGTACGAGACAAAGATAG 684
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ATGATGCGTCCACGTGCCGATCTG------------------------------------ 744
                                                                                  

consensus_6319#0      TTTCCCCTGGCTGAACTGAGCGCACTTTTAGTAGAACCGCTTCCGAGCGTTTTCCTGGTG 744
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ------------------------------------------------------------
                                                                                  

consensus_6319#0      TTTCTGATAGAACATAATGCCTATCACAACCAACACAACGACTATTAGCATGGAGAGAAG 804
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ------------------------------------------------------------
                                                                                  

consensus_6319#0      AATAAGGAAGAATATTTTCACATTCGACATGCCAGGCTTTGGATCGTCTTTGTGTTCGCG 864
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ------------------------------------------------------------
                                                                                  

consensus_6319#0      CGGTGCTTCGAATGTAGCGGCCGACGGTACGATCTGACGGCGGTCCTCGGCCAGTAGTGA 924
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ------------------------------------------------------------
                                                                                  

consensus_6319#0      CGGAGCCTCAAGTTCGAAGAACTTGATCGATATGATATCGTGATTATCGGACAGGTCTCC 984
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ------------------------------------------------------------
                                                                                  

consensus_6319#0      TGTGGTCGCCGATGCACCGAAGTAGTATCCGGTCGGCAGTTTAACGCCCTCCACTCGGAA 1044
consensus_6319#2      ------------------------------------------------------------
consensus_6319#1      ------------------------------------------------------------
                                                                                  

consensus_6319#0      GCACTCTTTCCATGTGGCCTTGTTTTCCAGACCGGTAAACAC 1086
consensus_6319#2      ------------------------------------------
consensus_6319#1      ------------------------------------------