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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1754 fasta sequence
[TCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTAACCATTCAACGGTATGCGGTGATCCCGCTGAGCACCAACTCGGGTCTGATCGGTTGGGTGCCCCACTGTGACACGCTGCACAAGCTGATCCGGGACTATCGCGATTCGAAGAAAACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCTCACGGTGATGCAGAAGGTGGAGGTGTTTGAGCATGCGCTTGATCAAACGAAAGGAGACGATCTGGCGAAGCTGCTCTGGCTGAAAAGCCCTTCGTCGGAGCAGTGGTTTGATCGGCGCACGAACTACATCCGCTCCCTTGCGGTCATGTCGATGGTGGGCTACATCTTGGGTCTCGGCGATCGCCATCCTTCCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATTTCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCCGCTTGACGCGCATGCTGATCAACGCGATGGAGGTGACCGGCATCGAAGGAACGTATCGGCGCACGTGCGAGAGCGTAATGAACGTGCTGCGCCGTAACAAGGACAGTCTTATGGCGGTACTGGAAGCGTTCGTGTACGATCCGCTGCTCAACTGGCGCCTGCTAGATTCGGACCGATTGCGTCGT-TCAAAGAACGCCGGTGACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTCTGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGACCGGCCGCCGGAGGTCAACCGTCGGCTACCGTGAATGTTCCTTCCGGTGGTACGACGGGCGCCATTCCCGTACCGAGCGCTTCCGGTGCTGCTGTGCCGCCAGGAGGTGATGCGCCCGATGGCAACTACCCCGCGATGCAGAATCCCGTCGACGTAACCAATAAGAAGGCACGTGCAATTGTCGATCGAGTGAAGGACAAGCTGACCGGCAAAGATTTCGGCAAAGCAGAACCAGTGGCCGTCAATAGACAGATCGACCTGCTGATCCAGCAGGCAACCAGGCAACGAAAATCTGTGCCAGTGCTATATCGGCTGGTGTCCGTTTTGGTAAAGGAGCTTTGGTTGGTGTGTGGGTTTGAACATGTTGTTGCCTGCTTGCAATGCTTTTCTACACGTGTGCGCGTCTACGCTGCTAGCACCATCGTCATAAAGTATGTCGTGCCTGTATTGTACCGTTTGTATTGGTAGACATACTTTGGTNTCCCCATGGGGAATTACTGTTGGAAGTGTGTATTGCCCNCGGATATATTCGATGGATTTNGGTTATGACCGTTGACTGGTTTAAGCNGTTCAGCGTTNATAACNGCTTCATTGNGTATTACANNNGAATTTCCAA]
[+] EMBL BX622502 [TCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTAACCATTCAACGGTATGCGGTGATCCCGCTGAGCACCAACTCGGGTCTGATCGGTTGGGTGCCCCACTGTGACACGCTGCACAAGCTGATCCGGGACTATCGCGATTCGAAGAAAACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCTCACGGTGATGCAGAAGGTGGAGGTGTTTGAGCATGCGCTTGA ]
[+] EMBL BM601837 [ ccgGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTAACCATTCAACGGTATGCGGTGATCCCGCTGAGCACCAACTCGGGTCTGATCGGTTGGGTGCCCCACTGTGACACGCTGCACAAGCTGATCCGGGACTATCGCGATTCGAAGAAAACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCTCACGGTGATGCAGAAGGTGGAGGTGTTTGAGCATGCGCTTGATCAAACGAAAGGAGACGATCTGGCGAAGCTGCTCTGGCTGAAAAGCCCTTCGTCGGAGCAGTGGTTTGATCGGCGCACGAACTACATCCGCTCCCTTGCGGTCATGTCGATGGTGGGCTACATCTTGGGTCTCGGCGATCGCCATCCTTCCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATTTCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCCGCTTGAC ]
[+] EMBL BX617935 [ CCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATTTCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCCGCTTGACGCGCATGCTGATCAACGCGATGGAGGTGACCGGCATCGAAGGAACGTATCGGCGCACGTGCGAGAGCGTAATGAACGTGCTGCGCCGTAACAAGGACAGTCTTATGGCGGTACTGGAAGCGTTCGTGTACGATCCGCTGCTCAACTGGCGCCTGCTAGATTCGGACCGATTGCGTCGT TCAAAGAACGCCGGTGACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTCTGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGACCGGCCGCCGGAGGTCAACCGTCG ]
[+] EMBL BX466312 [ cAGA TCGG CCGA GGGTTTTATCAAAGAACGCCGGT ACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTCTGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGACCGGCCGCCGGAGGTCAACCGTCGGCTACCGTGAATGTTCCTTCCGGTGGTACGACGGGCGCCATTCCCGTACCGAGCGCTTCCGGTGCTGCTGTGCCGCCAGGAGGTGATGCGCCCGATGGCAACTACCCCGCGATGCAGAATCCCGTCGACGTAACCAATAAGAAGGCACGTGCAATTGTCGATCGAGTGAAGGACAAGCTGACCGGCAAAGATTTCGGCAAAGCAGAACCAGTGGCCGTCAATAGACAGATCGACCTGCTGATCCAGCAGGCAACCAGGCAACGAAAATCTGTGCCAGTGCTATATCGGCTGGTGTCCGTTTTGGTAAAGGAGCTTTGGTTGGTGTGTGGGTTTGAACATGTTGTTGCCTGCTTGCAATGCTTTTCTACACGTGTGCGCGTCTACGCTGCTAGCACCATCGTCATAAAGTATGTCGTGCCTGTATTGTACCGTTTGTATTGGTAGACATACTTTGGTNTCCCCATGGGGAATTACTGTTGGAAGTGTGTATTGCCCNCGGATATATTCGATGGATTTNGGTTATGACCGTTGACTGGTTTAAGCNGTTCAGCGTTNATAACNGCTTCATTGNGTATTACANNNGAATTTCCAA]
consensusID : consensus_6320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[GAATCCCCCCGAGGTTAACATTATAAGAACTCTAAAAATACGCGAGATTTGAATCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGGCAATCTAACCATTCAACGGTTATGCGGTGATCCCGCTGAGCACCAAACTCGGGTCTGATCGGGTTGGGTGCCCACTGTGACAAGCTTGACAAAGCTGGATCCGGGACTATCGGCGGATTCGAAAAGAAAAAACCGAAATGGCTAAAACCATTCGGANGCATTAGGAATCCCTTGCNTGGCGAANTGGGCACCCGGACGTACAGAACCCATCCTCACGGTGAATGCCACGAAAGGTGGACAGNGTTTTGANCAATGCCGCTGATTACCACGACCAACAGGAGAACGAACTGGGCGAAGTCGGTCTCGCGCNGACAAAAGCCCTTCGCTCNTGCACGAGNGTTTGANCGGGCAGGANCGAT]
[+] EMBL AL932318 [GAATCCCCCCGAGGTTAACATTATAAGAACTCTAAAAATACGCGAGATTTGAATCAAGCATGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCCCTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTCCCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTGACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAAAACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAGCTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGGCAATCTAACCATTCAACGGTTATGCGGTGATCCCGCTGAGCACCAAACTCGGGTCTGATCGGGTTGGGTGCCCACTGTGACAAGCTTGACAAAGCTGGATCCGGGACTATCGGCGGATTCGAAAAGAAAAAACCGAAATGGCTAAAACCATTCGGANGCATTAGGAATCCCTTGCNTGGCGAANTGGGCACCCGGACGTACAGAACCCATCCTCACGGTGAATGCCACGAAAGGTGGACAGNGTTTTGANCAATGCCGCTGATTACCACGACCAACAGGAGAACGAACTGGGCGAAGTCGGTCTCGCGCNGACAAAAGCCCTTCGCTCNTGCACGAGNGTTTGANCGGGCAGGANCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6320#0 -----------------------------------------------------TCAAGCA 7
consensus_6320#1 GAATCCCCCCGAGGTTAACATTATAAGAACTCTAAAAATACGCGAGATTTGAATCAAGCA 60
*******
consensus_6320#0 TGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCC 67
consensus_6320#1 TGGGACCTATACTACCACGTGTTCCGGCGCATTTCGCGCCAGCTCGTACAGCTCACCTCC 120
************************************************************
consensus_6320#0 CTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTC 127
consensus_6320#1 CTGGAGCTGCAGTATGTCAGTCCGAAGCTGCTGGCATGTCGCAACCTTGAGCTGGCAGTC 180
************************************************************
consensus_6320#0 CCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTG 187
consensus_6320#1 CCAGGCAGCTACACGCCCGGTCAACAGCTGATCTGCATCGCCAGCATCGAGACGAACCTG 240
************************************************************
consensus_6320#0 ACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAA 247
consensus_6320#1 ACGATCATCAGCTCGAAGCAACGGCCTAGGAAGCTGTGCATCCGCGGGTCGAATGGTAAA 300
************************************************************
consensus_6320#0 AACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAG 307
consensus_6320#1 AACTACATGTTCCTGCTGAAAGGCCACGAAGATTTGCGCCAAGATGAGCGAGTGATGCAG 360
************************************************************
consensus_6320#0 CTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGGCGCAATCTA 367
consensus_6320#1 CTGTTCGGGCTGGTCAACACACTGCTGCTGAATGATCGTGACACGTTCCGG-GCAATCTA 419
*************************************************** ********
consensus_6320#0 ACCATTCAACGGT-ATGCGGTGATCCCGCTGAGCACCAA-CTCGGGTCTGATCGG-TTGG 424
consensus_6320#1 ACCATTCAACGGTTATGCGGTGATCCCGCTGAGCACCAAACTCGGGTCTGATCGGGTTGG 479
************* ************************* *************** ****
consensus_6320#0 GTGCCCCACTGTGACACGCTGCACAA-GCTG-ATCCGGGACTATCGC--GATTCGAAGAA 480
consensus_6320#1 GTGCCC-ACTGTGACAAGCTTGACAAAGCTGGATCCGGGACTATCGGCGGATTCGAAAAG 538
****** ********* *** **** **** ************** ******** *
consensus_6320#0 AACGATGCTAAACATCGAGCATAGGATCATGCTGCGAATGGCACCGGACTACGACCATCT 540
consensus_6320#1 AAAAAACCGAAATGGC-----TAAAACCATTC---GGANGCATTAGGAAT----CCCTTG 586
** * * *** * ** * *** * * * * *** * ** *
consensus_6320#0 CACGGTGATGCAGA-AGGTGGAGGTGTTTGAGCATGCGCTTGATCAAACGAAAGGAGACG 599
consensus_6320#1 CNTGGCGAANTGGGCACCCGGACGTAC---AGAACCCATCC--TCACGGTGAATGCCACG 641
* ** ** * * *** ** ** * * *** ** * ***
consensus_6320#0 ATCTGGCGAAGCTGCTCTGGCTGAAAAGCCCTTCGTCGGAGCAGTGGTTTGATCGGCGCA 659
consensus_6320#1 AAAGGTGGACAGNGTTTTGANC--AATGCCGCTGATTACCACGACCAACAGGAGAACGAA 699
* * ** * * ** ** *** * * * * ** *
consensus_6320#0 CGAACTACATCCGCTCCCTTGCGGTCATGTCGATGGTGGGCTACATCTTGGGTCTCGGCG 719
consensus_6320#1 CTGGGCGAAGTCGGTCTCGCGCNGACAAAAGCCCTTCGCTCNTGCACGAGNGTTTGANCG 759
* * ** ** * ** * ** * * * * ** * **
consensus_6320#0 ATCGCCATCCTTCCAATCTGATGCTGGATAGGTTGAGTGGAAAAATTCTTCACATCGATT 779
consensus_6320#1 GGCAGGANCGAT------------------------------------------------ 771
* * * *
consensus_6320#0 TCGGCGATTGCTTCGAGGTTGCAATGACGCGAGAAAAGTTCCCGGAGAAAATACCCTTCC 839
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 GCTTGACGCGCATGCTGATCAACGCGATGGAGGTGACCGGCATCGAAGGAACGTATCGGC 899
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 GCACGTGCGAGAGCGTAATGAACGTGCTGCGCCGTAACAAGGACAGTCTTATGGCGGTAC 959
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 TGGAAGCGTTCGTGTACGATCCGCTGCTCAACTGGCGCCTGCTAGATTCGGACCGATTGC 1019
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 GTCGTTCAAAGAACGCCGGTGACATGGACAGCGTGTCGGGCAGCATGCACGAAGACTCTC 1079
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 TGCTGAGCTACAATGCCAGACGCGATGCTCGGTTGAATGAGCTGAATGCAACGACGGGAC 1139
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 CGGCCGCCGGAGGTCAACCGTCGGCTACCGTGAATGTTCCTTCCGGTGGTACGACGGGCG 1199
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 CCATTCCCGTACCGAGCGCTTCCGGTGCTGCTGTGCCGCCAGGAGGTGATGCGCCCGATG 1259
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 GCAACTACCCCGCGATGCAGAATCCCGTCGACGTAACCAATAAGAAGGCACGTGCAATTG 1319
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 TCGATCGAGTGAAGGACAAGCTGACCGGCAAAGATTTCGGCAAAGCAGAACCAGTGGCCG 1379
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 TCAATAGACAGATCGACCTGCTGATCCAGCAGGCAACCAGGCAACGAAAATCTGTGCCAG 1439
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 TGCTATATCGGCTGGTGTCCGTTTTGGTAAAGGAGCTTTGGTTGGTGTGTGGGTTTGAAC 1499
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 ATGTTGTTGCCTGCTTGCAATGCTTTTCTACACGTGTGCGCGTCTACGCTGCTAGCACCA 1559
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 TCGTCATAAAGTATGTCGTGCCTGTATTGTACCGTTTGTATTGGTAGACATACTTTGGTN 1619
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 TCCCCATGGGGAATTACTGTTGGAAGTGTGTATTGCCCNCGGATATATTCGATGGATTTN 1679
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 GGTTATGACCGTTGACTGGTTTAAGCNGTTCAGCGTTNATAACNGCTTCATTGNGTATTA 1739
consensus_6320#1 ------------------------------------------------------------
consensus_6320#0 CANNNGAATTTCCAA 1754
consensus_6320#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||