These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1179 fasta sequence [CCGCCCACGCGTCCGGACGGTGGAGGAAGTTACTTGCGGCCATGATTTGCCCCCGTGCGATGGACTCTATGGAGTGCCAGAACTCTGTTTCCTGGAACCGAAACCGGGCAATTGTCGCGACTCCCAGACACGCTGGTACTTCGATAGCGATAAGAACGACTGCTCGATCCTTTTCTTCACTGGATGCGGTGGCAACAACAACAACTTTATGTCCCGCGAGGACTGTTTGGATACGTGCAGTAAAGATCGTAAATTTACCAACATTCCGATACGGGACCAGATCAGCACGAACAGTGCGGGCGGTGGTTCCGACTACGGCTCGGACCTGAAGCAGGACTGCAAGACGTCACACTGGAAGCGGGGCCCGTGCAACGCGACCCTGCGGCGAAGGCTTCCGCGTGAAGAGTCGCACAATTCTGGTGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCTTCGTGCACTGCGACTCGTCCCGCCACGACACGAATTCCCTCGTGGGGCCCCAGCACCCGCTACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCTGGGTCCGCGTGGTCACCGTGCAGCAAGACCTGCGGGGACTATGCCGTGCAGCAGCGCACCCGCTACGTGCTCAATCCCGAGAACGCTCGGTTCTGTCCGCACCGGCTCGAGGAGCGGAAATGTGATATCATGCCTTGCCTGTTGGGCAAATAGAGCCGGGCCGGTTTGTGACCCAGGTGCCAATGGTGGCGCGGTCGTCCGACGACGATGATGCAAAACTCGTGCAGGACAGTCGTGGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTTTTGTGCACCCTGTTTCCCGATACATCTCATCGATTGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTATTCCTCACCCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAGCGCAGCTTCGCCGTCGTGGAACGTGACGGGAAAACAGAAGCTAGTGGC] [+] EMBL BM582778 [CCGCCCACGCGTCCGGACGGTGGAGGAAGTTACTTGCGGCCATGATTTGCCCCCGTGCGATGGACTCTATGGAGTGCCAGAACTCTGTTTCCTGGAACCGAAACCGGGCAATTGTCGCGACTCCCAGACACGCTGGTACTTCGATAGCGATAAGAACGACTGCTCGATCCTTTTCTTCACTGGATGCGGTGGCAACAACAACAACTTTATGTCCCGCGAGGACTGTTTGGATACGTGCAGTAAAGATCGTAAATTTACCAACATTCCGATACGGGACCAGATCAGCACGAACAGTGCGGGCGGTGGTTCCGACTACGGCTCGGACCTGAAGCAGGACTGCAAGACGTCACACTGGAAGCGGGGCCCGTGCAACGCGACCCTGCGGCGAAGGCTTCCGCGTGAAGAGTCGCACAATTCTGGTGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCTTCGTGCACTGCGACTCGTCCCGCCACGACACGAATTCCCTCGTGGGGCCCCAGCACCCGCTACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCTGGGTCCGCGTGGTCACCGTGCAGCAAGACCTGCGGGGACT ] [+] EMBL BX613483 [ TTCCGCGTGAAGAGTCGCACAATTCTGGTGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCTTCGTGCACTGCGACTCATCCCGCCACGACACGAA TCCCTCGTGGGGCCCCAGCACCCGCTACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCT GGTCAGCGTGGTCACCGTGCAGCAAGACCTGCGGCGACTATGCCGTGCAGCAGCGCACCCGCTACGTGCTCAATCCCGAGAACGCTCGGTTCTGTCCGCACCGGCTCGAGGAGCGGAAATGTGATATCATGCCTTGCCTGTTGGGCAAATAGAGCCGGGCCGGTTTGTGACCCAGGTGCCAATGGTGGCGCGGTCGTCCGACGACGATGATGCAAAACTCGTGCAGGACAGTCGTGGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTTTTGTGCACCCTGTTTCCCGATACATCTCATCGATTGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTATTCCTCAACCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAGCGCAGCTTCGCCGTCGTGGAACGTGACGGGAAAACAGAAGCTAGTGGC] [+] EMBL BX608711 [ AGCAGAAATGTCGTCGCTCTGTTGCATCGTTTTTTGTGCACTCTGTTTCCCGATACATCTCATCGATTGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTATTCCTCACCCCCCTTTGAGTTGT ] [+] EMBL AGA281486 [ TTTTTTTTTTTTTTTTATTCCTCACCCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAG ] consensusID : consensus_6322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [CAAGAATCGCACGAGNTGCAAACTCGTGCAGGACAGTCGTGCGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTATGTGCACTCTGTTTCCCGAGTACATCTACATCGATATGCATCGATAATT] [+] EMBL BX466219 [CAAGAATCGCACGAGNTGCAAACTCGTGCAGGACAGTCGTGCGCCCGTTAGATTTATTTCCGCTCACTCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGAGTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAGGAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTATGTGCACTCTGTTTCCCGAGTACATCTACATCGATATGCATCGATAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6322#0 CCGCCCACGCGTCCGGACGGTGGAGGAAGTTACTTGCGGCCATGATTTGCCCCCGTGCGA 60 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TGGACTCTATGGAGTGCCAGAACTCTGTTTCCTGGAACCGAAACCGGGCAATTGTCGCGA 120 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CTCCCAGACACGCTGGTACTTCGATAGCGATAAGAACGACTGCTCGATCCTTTTCTTCAC 180 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TGGATGCGGTGGCAACAACAACAACTTTATGTCCCGCGAGGACTGTTTGGATACGTGCAG 240 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TAAAGATCGTAAATTTACCAACATTCCGATACGGGACCAGATCAGCACGAACAGTGCGGG 300 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CGGTGGTTCCGACTACGGCTCGGACCTGAAGCAGGACTGCAAGACGTCACACTGGAAGCG 360 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 GGGCCCGTGCAACGCGACCCTGCGGCGAAGGCTTCCGCGTGAAGAGTCGCACAATTCTGG 420 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TGCATCCGTCGAACGGTGGCCAGCGATGTCCGCGGAAGCTGCGCAAGGTCGAGCGGTGCT 480 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TCGTGCACTGCGACTCGTCCCGCCACGACACGAATTCCCTCGTGGGGCCCCAGCACCCGC 540 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TACGAGCCGGAACCGATCGAGTGCGAGTACTCGGCCTGGGTCCGCGTGGTCACCGTGCAG 600 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CAAGACCTGCGGGGACTATGCCGTGCAGCAGCGCACCCGCTACGTGCTCAATCCCGAGAA 660 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CGCTCGGTTCTGTCCGCACCGGCTCGAGGAGCGGAAATGTGATATCATGCCTTGCCTGTT 720 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 GGGCAAATAGAGCCGGGCCGGTTTGTGACCCAGGTGCCAATGGTGGCGCGGTCGTCCGAC 780 consensus_6322#1 ------------------------------------------------CAAGAATCGCAC 12 * ** ** consensus_6322#0 GACGATGATGCAAAACTCGTGCAGGACAGTCGTG-GCCCGTTAGATTTATTTCCGCTCAC 839 consensus_6322#1 GA----GNTGCAAA-CTCGTGCAGGACAGTCGTGCGCCCGTTAGATTTATTTCCGCTCAC 67 ** * ****** ******************* ************************* consensus_6322#0 TCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGA 899 consensus_6322#1 TCGCGCTACGTATATAGGTGTGTAGTGTGTGTATGTGTACATCGCACGGCCGTGGGTTGA 127 ************************************************************ consensus_6322#0 GTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAG 959 consensus_6322#1 GTTAGAGAGTGTTAGAAGCAGCACCAAAAAAAGATGGAAGTGATGACTCCAACGCGACAG 187 ************************************************************ consensus_6322#0 GAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTTTTGTGCACCCTGTTTCCCGA-TACA 1018 consensus_6322#1 GAAGCAGAAATGTGGTCGCTCTGTTGCATCGTTTAT-GTGCACTCTGTTTCCCGAGTACA 246 ********************************** * ****** *********** **** consensus_6322#0 TCT-CATCGAT-TGCATCGATATTTTATGTATCTATATAGTTTTTTGTTTTGTTTTATTA 1076 consensus_6322#1 TCTACATCGATATGCATCGATAATT----------------------------------- 271 *** ******* ********** ** consensus_6322#0 TTCCTCACCCCCCTTTGAGTTGTCGGACATCCCAATCCGACATTGATGAATGAAGCGCAG 1136 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CTTCGCCGTCGTGGAACGTGACGGGAAAACAGAAGCTAGTGGC 1179 consensus_6322#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||