These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1953 fasta sequence [CCGTGTTGGATTGAGTGGTATCACAACTACATCTTCGAGCAAAAAAGCGAGCAAAGCAACCGTTGCCGGAAGACAACACTACCGCACCGACTATCGAGGAGGCTGTGGTGCTAAACGGGATAAGGCAGCCTGTCCAGTCATTTCACCCGTCGTCCGTCAGCTGTTGGTTCGGCGATCCTGATCCATCCCGGAGCCAATAAAAAAGGCTTTTTGCATAAAATCTTAACAGCACAAACCACGATCGCGGATCGTCTTCCTTAAGCACAACAACAACAGCAAGATGAGCGAACAAAGCATCATTGGGGCCCGGGCCTCGGTCATGGTGTACGACGATGTGCAGCGGAAGTGGATACCGTCCGGCAGCTCGTCCGGTCTGAGCAAGGTGCAAATCTTCCACCATCAGCAAAACAACACGTTCCGCGTCGTCGGTCGGAAGCTGCAGGACCATG-AGGTCGTCATCAACTGTTCGATCATCAAGGGGCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTACGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGCTTTGGATGTGCTGAGTGGACGCGTACCACCCTCG-TCGACCATGCAAACGACCAATCCGAACCCGAGCCAGATGGCTGCGGCGTACGAGGAGGACATGGGCTACCGTACGATGACCCGTGAAGATGCGGCCATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACCACCACAGCAACCGCCGAACTCGATACCGGGCCCGGGCGGTGGCATACTATCCCCGCAAACGCCGACATCTCAAACGCTGCCATCACAAGCCACCCAGCAGCAGCAGCAGCAGCAGCAACAACAGACGCATCATCGTACAAACAGTGCACCACCGGTTCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAGCAGTCACAGGCGCACAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGATGCCAATGCAGAAGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTCCTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGCAGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGCCACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTCCAGCTGGCCAGTGCCAAACTGAAACGCAGCCAACCGCCGAAAAGCTCGCCGGCCGCTGGCGTGTCGTCCACCTCTTCCTCCGCCAACAATGGCAGCAATGCCGTGTCGTCCACCGTGACGGAAAACAGTGGCAGCAGTACATCGAGCGGAGGTAGACGGTCGTCATCTGGTATGGCATCGATGATGGATGAAATGGCGAAAACACTTGCCAGGCGTCGAGCGCAGGCAGAAAAGAAGGAGCCGGACTCCAACGAGGATGGAGGTGCAGCTGGATCCGGT] [+] EMBL BM629951 [CCGTGTTGGATTGAGTGGTATCACAACTACATCTTCGAGCAAAAAAGCGAGCAAAGCAACCGTTGCCGGAAGACAACACTACCGCACCGACTATCGAGGAGGCTGTGGTGCTAAACGGGATAAGGCAGCCTGTCCAGTCATTTCACCCGTCGTCCGTCAGCTGTTGGTTCGGCGATCCTGATCCATCCCGGAGCCAATAAAAAAGGCTTTTTGCATAAAATCTTAACAGCACAAACCACGATCGCGGATCGTCTTCCTTAAGCACAACAACAACAGCAAGATGAGCGAACAAAGCATCATTGGGGCCCGGGCCTCGGTCATGGTGTACGACGATGTGCAGCGGAAGTGGATACCGTCCGGCAGCTCGTCCGGTCTGAGCAAGGTGCAAATCTTCCACCATCAGCAAAACAACACGTTCCGCGTCGTCGGTCGGAAGCTGCAGGACCATG AGGTCGTCATCAACTGTTCGATCATCAAGGGGCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTACGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGCTTTGGATGTGCTGAGTGGACGCGTACCACCCTCG TCGACCATGCAAACGACCAATCCGAACCCGAGCCAGATGGCT ] [+] EMBL BM650037 [ AAACAACACGTTCCGCGTCGTCGGTCGGAAGCTGCAGGACCATGCAGGTCGTCATCAACTGTTCGATCATCAAGGGGCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTACGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGCTTTGGATGTGCTGAGTGGACGCGTACCACCCTCGATCGACCATGCAAACGACCAATCCGAACCCGAGCCAGATGGCTGCGGCGTACGAGGAGGACATGGGCTACCGTACGATGACCCGTGAAGATGCGGCCATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACCACC ] [+] EMBL CNS08WGL [ CATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACCACCACAGCAACCGCCGAACTCGATACCGGGCCCGGGCGGTGGCATACTATCCCCGCAAACGCCGACATCTCAAACGCTGCCATCACAAGCCACCCAGCAGCAGCAGCAGCAGCAGCAACAACAGACGCATCATCGTACAAACAGTGCACCACCGGTTCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAGCAGTCACAGGCGCACAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGATGCCAATGCAGAAGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTCCTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGCAGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGCCACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTC ] [-] EMBL CNS08WGM [ cCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTTCGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGATGCCAATGCAGCCGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTCCTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGCAGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGCCACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTCCAGCTGGCCAGTGCCAAACTGAAACGCAGCCAACCGCCGAAAAGCTCGCCGGCCGCTGGCGTGTCGTCCACCTCTTCCTCCGCCAACAATGGCAGCAATGCCGTGTCGTCCACCGTGACGGAAAACAGTGGCAGCAGTACATCGAGCGGAGGTAGACGGTCGTCATCTGGTATGGCATCGATGATGGATGAAATGGCGAAAACACTTGCCAGGCGTCGAGCGCAGGCAGAAAAGAAGGAGCCGGACTCCAACGAGGATGGAGGTGCAGCTGGATCCGGT] consensusID : consensus_6323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGGAGCTGTATGTCGTCTGGTGTGGTGTTACCAGTGAGTAGAGTACACATAACACATTGCCCGAGAGGTGGTGTCAAAGCTTGGGTCGTAGCGTGCGCGTGTAGCACTAGCAGAGCAAATTCACCAAAAGGCAGCATCCGCAATCCGCGACAATTTAGATGCACCACCGGTCCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAACAGTCACAGGCGCAGCAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAACCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGTCAACCACAGTACGGTATACCACCGGTTCCACAGATG] [+] EMBL BM603986 [CCGGAGCTGTATGTCGTCTGGTGTGGTGTTACCAGTGAGTAGAGTACACATAACACATTGCCCGAGAGGTGGTGTCAAAGCTTGGGTCGTAGCGTGCGCGTGTAGCACTAGCAGAGCAAATTCACCAAAAGGCAGCATCCGCAATCCGCGACAATTTAGATGCACCACCGGTCCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAACAGTCACAGGCGCAGCAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAACCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGTCAACCACAGTACGGTATACCACCGGTTCCACAGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6323#0 CCGTGTTGGATTGAGTGGTATCACAACTACATCTTCGAGCAAAAAAGCGAGCAAAGCAAC 60 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 CGTTGCCGGAAGACAACACTACCGCACCGACTATCGAGGAGGCTGTGGTGCTAAACGGGA 120 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 TAAGGCAGCCTGTCCAGTCATTTCACCCGTCGTCCGTCAGCTGTTGGTTCGGCGATCCTG 180 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 ATCCATCCCGGAGCCAATAAAAAAGGCTTTTTGCATAAAATCTTAACAGCACAAACCACG 240 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 ATCGCGGATCGTCTTCCTTAAGCACAACAACAACAGCAAGATGAGCGAACAAAGCATCAT 300 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 TGGGGCCCGGGCCTCGGTCATGGTGTACGACGATGTGCAGCGGAAGTGGATACCGTCCGG 360 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 CAGCTCGTCCGGTCTGAGCAAGGTGCAAATCTTCCACCATCAGCAAAACAACACGTTCCG 420 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 CGTCGTCGGTCGGAAGCTGCAGGACCATGAGGTCGTCATCAACTGTTCGATCATCAAGGG 480 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 GCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTA 540 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 CGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGC 600 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 TTTGGATGTGCTGAGTGGACGCGTACCACCCTCGTCGACCATGCAAACGACCAATCCGAA 660 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 CCCGAGCCAGATGGCTGCGGCGTACGAGGAGGACATGGGCTACCGTACGATGACCCGTGA 720 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 AGATGCGGCCATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACC 780 consensus_6323#1 ------------------------------CCGGAGCTGTATGTCGTCTGGTGTGGTGTT 30 ** ** ** * ** **** consensus_6323#0 ACCACAGCAACCGCCGAACTCGATACCGGGCCCGGGCGGTGGCATACTATCCCCGCAAAC 840 consensus_6323#1 ACCAGTGAGTAGAGTACACATAACACATTGCCCGAGAGGTGGTGTCAAAGCTTGGGTCGT 90 **** * ** * ** ***** * ***** * * * * consensus_6323#0 GCCG-ACATCTCAAACGCTGCCATCACAAGCCACCCAGCAGCAGCAGCAGCAGCAGCAAC 899 consensus_6323#1 AGCGTGCGCGTGTAGCACTAGCAGAGCAAATTCACCAAAAG-----GCAGCATCCGCAAT 145 ** * * * * ** ** *** *** ** ****** * **** consensus_6323#0 AACAGACGCATCATCGTACAAACAGTGCACCACCGGTTCCGCCAGCGTTACCGACACAAC 959 consensus_6323#1 C-----CGCGACAATTTA-----GATGCACCACCGGTCCCGCCAGCGTTACCGACACAAC 195 *** ** ** ************ ********************** consensus_6323#0 AGCAGCAGCAGGCATCGCAGCAGTCACAGGCGCA-CAACAGCAGCAACAGAAACCGATCT 1018 consensus_6323#1 AGCAGCAGCAGGCATCGCAACAGTCACAGGCGCAGCAACAGCAGCAACAGAAACCGATCT 255 ******************* ************** ************************* consensus_6323#0 ATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGC 1078 consensus_6323#1 ATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGC--- 312 ********************************************************* consensus_6323#0 CGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTCGG 1138 consensus_6323#1 CGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAACCATCAAATGCTGAATCAGTCGG 372 ************************************* ********************** consensus_6323#0 TGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACC 1198 consensus_6323#1 TGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACC 432 ************************************************************ consensus_6323#0 TTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATC 1258 consensus_6323#1 TTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATC 492 ************************************************************ consensus_6323#0 CAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGC 1318 consensus_6323#1 CAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGC 552 ************************************************************ consensus_6323#0 AGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATG 1378 consensus_6323#1 AGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATG 612 ************************************************************ consensus_6323#0 GTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGA 1438 consensus_6323#1 GTGTCGGCGGTCCGTACGGTGCTGGTCAACCACAGTACGGTATACCACCGGTTCCACAGA 672 ************************* ********************************** consensus_6323#0 TGCCAATGCAGAAGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTC 1498 consensus_6323#1 TG---------------------------------------------------------- 674 ** consensus_6323#0 CTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGC 1558 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 AGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGC 1618 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 CACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTCCAGC 1678 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 TGGCCAGTGCCAAACTGAAACGCAGCCAACCGCCGAAAAGCTCGCCGGCCGCTGGCGTGT 1738 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 CGTCCACCTCTTCCTCCGCCAACAATGGCAGCAATGCCGTGTCGTCCACCGTGACGGAAA 1798 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 ACAGTGGCAGCAGTACATCGAGCGGAGGTAGACGGTCGTCATCTGGTATGGCATCGATGA 1858 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 TGGATGAAATGGCGAAAACACTTGCCAGGCGTCGAGCGCAGGCAGAAAAGAAGGAGCCGG 1918 consensus_6323#1 ------------------------------------------------------------ consensus_6323#0 ACTCCAACGAGGATGGAGGTGCAGCTGGATCCGGT 1953 consensus_6323#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||