Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6324 cluster # 6324       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6324#0 length = 934 sequences # 2  
consensus_6324#1 length = 867 sequences # 3  

consensusID : consensus_6324#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 934
fasta sequence
                              [CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCATTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAAAATAAA]

[+] EMBL BM650726             [CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCATTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAA                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM621088             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAAAATAAA]


>consensus_6324#0 CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCA TTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACT TTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGT TTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATA TTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAA GTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCA TCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTT GATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAAC ATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATT ATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTT AACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTG TGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTG AATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCAT CAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGT CAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGT ACCATATACTATGTAATGAACATAGCAAAATAAA



consensusID : consensus_6324#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 867
fasta sequence
                              [ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAAGTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACACGTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACG]

[+] EMBL BX614500             [ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAAGTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX625683             [                                             ATGACTCATTTCCAAGTTTGTTTAGCTCCTCTCGGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGGAAATGGTGTTGTAATGGTATAGGCTATATAAGCATTTGTACACAGGCACTAAGAAGTTTTTAACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACACGTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACG]
[+] EMBL BX627524             [                                                                                                                                                                                                                               GATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTACGCATTACTTTGAATGCTTAGACACGTTGGTCAAAATATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACTAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATGTACGAATTTGGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGGTTATCTctt                                                                                              ]


>consensus_6324#1 ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAA GTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAG AACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGAT ATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGAC TATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACA CAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAA TTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACAC GTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTT GATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTA GCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCA TATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAA CTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAA TTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAA ATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTT GAAATACCGTAATAGAGAGATGGGACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAA 60
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      GTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAG 120
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      AACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGAT 180
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      ATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGAC 240
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      TATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACA 300
                                                                                  

consensus_6324#0      ---------------------CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAA 39
consensus_6324#1      CAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAA 360
                                           *   **  * **     * ** **      *  * * **

consensus_6324#0      ATGCTTATATAGCCTATACCA-TTACAACACCATTTCCTTGGTCTT---TATTTA----- 90
consensus_6324#1      TTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACAC 420
                       *  *  ***    * * * * ***        * * * *    **   ** ***     

consensus_6324#0      --TAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTT 148
consensus_6324#1      GTTGGTCAAAT-TATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATT 479
                        * ******* * * ** ** *      *  * *  *      *   * ******* **

consensus_6324#0      CGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCT 208
consensus_6324#1      TGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCT 539
                       ***********************************************************

consensus_6324#0      AGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTC 268
consensus_6324#1      AGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTC 599
                      ************************************************************

consensus_6324#0      ATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTA 328
consensus_6324#1      ATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTA 659
                      ************************************************************

consensus_6324#0      ACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAA 388
consensus_6324#1      ACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAA 719
                      ************************************************************

consensus_6324#0      ATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAA 448
consensus_6324#1      ATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAA 779
                      ************************************************************

consensus_6324#0      AATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCT 508
consensus_6324#1      AATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCT 839
                      ************************************************************

consensus_6324#0      TGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTT 568
consensus_6324#1      TGAAATACCGTAATAGAGAGATGGGACG-------------------------------- 867
                      ****************************                                

consensus_6324#0      CGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATA 628
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      TGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCT 688
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      AATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATA 748
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      TGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTA 808
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      ACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAG 868
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      AAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAA 928
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      AATAAA 934
consensus_6324#1      ------
                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)