cluster # 6324

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Anopheles gambiae
cluster # 6324 cluster # 6324 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6324#0 length = 934 sequences # 2

consensus_6324#1 length = 867 sequences # 3

consensusID : consensus_6324#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 934
fasta sequence

                              [CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCATTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAAAATAAA]

[+] EMBL BM650726             [CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCATTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAA                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM621088             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAAAATAAA]




>consensus_6324#0
CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCA
TTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACT
TTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGT
TTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATA
TTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAA
GTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCA
TCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTT
GATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAAC
ATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATT
ATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTT
AACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTG
TGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTG
AATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCAT
CAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGT
CAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGT
ACCATATACTATGTAATGAACATAGCAAAATAAA

consensusID : consensus_6324#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 867
fasta sequence

                              [ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAAGTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACACGTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACG]

[+] EMBL BX614500             [ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAAGTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX625683             [                                             ATGACTCATTTCCAAGTTTGTTTAGCTCCTCTCGGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGGAAATGGTGTTGTAATGGTATAGGCTATATAAGCATTTGTACACAGGCACTAAGAAGTTTTTAACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACACGTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACG]
[+] EMBL BX627524             [                                                                                                                                                                                                                               GATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTACGCATTACTTTGAATGCTTAGACACGTTGGTCAAAATATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACTAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATGTACGAATTTGGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGGTTATCTctt                                                                                              ]




>consensus_6324#1
ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAA
GTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAG
AACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGAT
ATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGAC
TATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACA
CAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAA
TTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACAC
GTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTT
GATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTA
GCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCA
TATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAA
CTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAA
TTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAA
ATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTT
GAAATACCGTAATAGAGAGATGGGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAA 60
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      GTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAG 120
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      AACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGAT 180
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      ATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGAC 240
                                                                                  

consensus_6324#0      ------------------------------------------------------------
consensus_6324#1      TATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACA 300
                                                                                  

consensus_6324#0      ---------------------CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAA 39
consensus_6324#1      CAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAA 360
                                           *   **  * **     * ** **      *  * * **

consensus_6324#0      ATGCTTATATAGCCTATACCA-TTACAACACCATTTCCTTGGTCTT---TATTTA----- 90
consensus_6324#1      TTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACAC 420
                       *  *  ***    * * * * ***        * * * *    **   ** ***     

consensus_6324#0      --TAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTT 148
consensus_6324#1      GTTGGTCAAAT-TATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATT 479
                        * ******* * * ** ** *      *  * *  *      *   * ******* **

consensus_6324#0      CGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCT 208
consensus_6324#1      TGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCT 539
                       ***********************************************************

consensus_6324#0      AGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTC 268
consensus_6324#1      AGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTC 599
                      ************************************************************

consensus_6324#0      ATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTA 328
consensus_6324#1      ATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTA 659
                      ************************************************************

consensus_6324#0      ACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAA 388
consensus_6324#1      ACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAA 719
                      ************************************************************

consensus_6324#0      ATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAA 448
consensus_6324#1      ATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAA 779
                      ************************************************************

consensus_6324#0      AATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCT 508
consensus_6324#1      AATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCT 839
                      ************************************************************

consensus_6324#0      TGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTT 568
consensus_6324#1      TGAAATACCGTAATAGAGAGATGGGACG-------------------------------- 867
                      ****************************                                

consensus_6324#0      CGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATA 628
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      TGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCT 688
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      AATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATA 748
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      TGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTA 808
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      ACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAG 868
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      AAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAA 928
consensus_6324#1      ------------------------------------------------------------
                                                                                  

consensus_6324#0      AATAAA 934
consensus_6324#1      ------