These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence [CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCATTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAAAATAAA] [+] EMBL BM650726 [CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAAATGCTTATATAGCCTATACCATTACAACACCATTTCCTTGGTCTTTATTTATAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTTCGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAA ] [+] EMBL BM621088 [ ccgCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTTCGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATATGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCTAATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATATGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTAACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAGAAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAAAATAAA] consensusID : consensus_6324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 867 fasta sequence [ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAAGTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACACGTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACG] [+] EMBL BX614500 [ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAAGTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGA ] [+] EMBL BX625683 [ ATGACTCATTTCCAAGTTTGTTTAGCTCCTCTCGGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAGAACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGATATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGACTATAAATAAAGACCAAGGAAATGGTGTTGTAATGGTATAGGCTATATAAGCATTTGTACACAGGCACTAAGAAGTTTTTAACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACACGTTGGTCAAATTATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAAAATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCTTGAAATACCGTAATAGAGAGATGGGACG] [+] EMBL BX627524 [ GATAGCACACATTTGACTATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACACAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAATTTGTCTTATTATTTGTCCTAATTATTGGGTTTTACGCATTACTTTGAATGCTTAGACACGTTGGTCAAAATATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATTTGATATCAAGTACTAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCTAGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTCATGTACGAATTTGGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTAACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAAATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGGTTATCTctt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6324#0 ------------------------------------------------------------ consensus_6324#1 ACTAATTTGCAAAACCATATGATATGCAACCATATGCAGAGGTATATGACTCATGTCCAA 60 consensus_6324#0 ------------------------------------------------------------ consensus_6324#1 GTTTGTTTAGCTCCCCTCAGTTGATTTCGTAAGAGTAACTACGTTTAGCCTCACTAACAG 120 consensus_6324#0 ------------------------------------------------------------ consensus_6324#1 AACAACTGCATCAGTTGTCTTCGGAATAAAATATCTTTTGCGACAAAGTTTGCACTTGAT 180 consensus_6324#0 ------------------------------------------------------------ consensus_6324#1 ATCGAAATCGCTGCCTGAAAGAACAGCATAAAAGTTTACGATGGATAGCACACATTTGAC 240 consensus_6324#0 ------------------------------------------------------------ consensus_6324#1 TATAAATAAAGACCAAGAAAATGGTGTTGTAATGGTATAGGCTATATAAGCACTTGTACA 300 consensus_6324#0 ---------------------CCGATTATATTTCTAGCACTTCTTAGTGCCTGTGTACAA 39 consensus_6324#1 CAGGCACTAAGAAGTTTTTGACAAGTTTCACTTAACATAGTTGTTGAAAGTTACGAATAA 360 * ** * ** * ** ** * * * ** consensus_6324#0 ATGCTTATATAGCCTATACCA-TTACAACACCATTTCCTTGGTCTT---TATTTA----- 90 consensus_6324#1 TTTGTCTTATTATTTGTCCTAATTATTGGGTTTTATGCATTACTTTGAATACTTAGACAC 420 * * *** * * * * *** * * * * ** ** *** consensus_6324#0 --TAGTCAAATGTGTGCTATCCATCGTAAACTTTTATGCTGTTCTTTCAGGCAGCGATTT 148 consensus_6324#1 GTTGGTCAAAT-TATTCTCTCAAGTCAGGATATCTTGGGCAAAATAGTAAGCAGCGAATT 479 * ******* * * ** ** * * * * * * * ******* ** consensus_6324#0 CGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCT 208 consensus_6324#1 TGATATCAAGTACGAATCTAGTCTTACGCTGTTTCCAGGCAAGTCGATGTGAAAATAGCT 539 *********************************************************** consensus_6324#0 AGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTC 268 consensus_6324#1 AGCGAAACTTCACATACAAAAATAGGATTATATTTCTAGCACTTTTGTACGTGAAGTTTC 599 ************************************************************ consensus_6324#0 ATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTA 328 consensus_6324#1 ATATACGAATTTTGAAAACGCGTTGCTCTCAAGTTAATGGTTGTTATGACAGAAAAATTA 659 ************************************************************ consensus_6324#0 ACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAA 388 consensus_6324#1 ACTAATCATCTTTCTACACTTGCCAATTGGCATCAGCAAACCCATCGAACTCATGTCGAA 719 ************************************************************ consensus_6324#0 ATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAA 448 consensus_6324#1 ATTGTGTAAATTTGGATGGGTTCAACGGGTTTGATGTGTCAATGTTTATCTGAAGTTCAA 779 ************************************************************ consensus_6324#0 AATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCT 508 consensus_6324#1 AATGCTAAGCGTTCGAAAGAGCAAATGTAAACATGTGGTAAGAATCGCTATATTTTCCCT 839 ************************************************************ consensus_6324#0 TGAAATACCGTAATAGAGAGATGGGACGGATTATTAAAAATAAAATAATTTCTGTTTTTT 568 consensus_6324#1 TGAAATACCGTAATAGAGAGATGGGACG-------------------------------- 867 **************************** consensus_6324#0 CGTCTTTCCTAAACTCAGACCGAGAGCCCCTTAACATGCTTCCCTCCTATCCTTAATATA 628 consensus_6324#1 ------------------------------------------------------------ consensus_6324#0 TGTGCTGGTTATTTAGAATTTACTTACAAGTGTGAAAGAAAAGCAACGGCTTAGAAATCT 688 consensus_6324#1 ------------------------------------------------------------ consensus_6324#0 AATAAAGACAAAACTGGTTTTGATTGCGACTGAATTCGGGAAAATTAACAGTAATACATA 748 consensus_6324#1 ------------------------------------------------------------ consensus_6324#0 TGGGGTAAACAAAGAAATTGTTAAAAAGGCATCAGAACGGCTGGCAAATATTGGATTCTA 808 consensus_6324#1 ------------------------------------------------------------ consensus_6324#0 ACACATTCAGTTCAAAAAAATAACAAAAACGTCAAAAAACTCAGAACAAGAAACCCTCAG 868 consensus_6324#1 ------------------------------------------------------------ consensus_6324#0 AAACTTTTTCTTCATAATTGATTTACTAATGTACCATATACTATGTAATGAACATAGCAA 928 consensus_6324#1 ------------------------------------------------------------ consensus_6324#0 AATAAA 934 consensus_6324#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||