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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1025 fasta sequence
[ACTAGATTCGACAATCAAAAATTTACAGCTGATAAAGAGCGATCTTCTTAATATACTTTCATCAACCTTCCCCATGCCCATCGCAAAGGTTCGTTGCACAATGCGAGTTTTTGATTGGGAATGCTTCAAGTATCAAAAGTCCAGTTAATAGTGTTCTCCACAACATAAATTCCACCATCGATCGAGTAGTCACACGCCAGTAAACGCCAGTTGCGTTCCTTTTCCCGTCATCATGCGGCGCCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAAGGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCTCTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCTGGACCGAGAGGTCTGGATGCATGCGGAG-ACAGCTGAAAGCGAATTTCCCTCACGATGAACGGTGTCGATTGTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCCCGAACCGTGCAGTGGCAGATTTAGCCGTAGTCTGATGCTTTCCGTCAACGAGCGACTGTTATCTACTGCTGGCGAAATATGTTATCAGCGTCA-CCCATCCAAGGATCCACGATCGGTATCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCGGCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGTTCGTAGCGTTCGAGCAGCTGCTTGTACGGTCGGATTTCGTATTCATCAGCTGTCCCCTAACCGACGCTACCGTTCGGATGTTTGG-CCGGGAAGCATTTGCAGCGATGAAGCCAACTGCCGTACTGATCAACGTTGCACGTGGCGCGATCGTCGACGAGGCTGCCCTGCTGGATGCGTTGAAAGGTGGACAAATAAGAGCGGCTGGATTGGATACTGTGACGGATGAACATTAACAAAAAATAAAAAATG]
[+] EMBL CNS09FM6 [ACTAGATTCGACAATCAAAAATTTACAGCTGATAAAGAGCGATCTTCTTAATATACTTTCATCAACCTTCCCCATGCCCATCGCAAAGGTTCGTTGCACAATGCGAGTTTTTGATTGGGAATGCTTCAAGTATCAAAAGTCCAGTTAATAGTGTTCTCCACAACATAAATTCCACCATCGATCGAGTAGTCACACGCCAGTAAACGCCAGTTGCGTTCCTTTTCCCGTCATCATGCGGCGCCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAAGGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCTCTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCTGGACCGAGAGGTCTGGATGCATGCGGAG ACAGCTGAAAGCGAATTTCCCTCACGATGAACGGTGTCGATTGTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCCCGAACCGTGCAGTGGCAGATTTAGCCGTAGTCTGATGCTTTCCGTCAACGAGCGACTGTTATCTACTGCTGGCGAAATATGTTATCAGCGTCA CCCATCCAAGGATCCACGATCGGTATCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCGGCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGTTCGTAGCGTTCGAGCAGCTGCTTGTACGGTCGGATTTCGTATTCATCAGCTGTCCCCTAACCGACGCTACCGTTCGGATGTTTGG CCGGGAAGCATTTGCAGCGATGAAGCCAACTGCCGTACTGATCAACGTTGCACGTGGCGCGATCGTCGACGAGGCTGCCCTGCTGGATGCGTTGAAAGGTGGACAAATAAGAGCGGCTGGATTGGATACTGTGACGGATGAACATTAACAAAAAATAAAAAATG]
[+] EMBL CNS08O00 [ ttatAAGAGCGATCTTCTTAATATACTTTCATCAACCTTCCCCATGCCCATCGCAAAGGTTCGTTGCACAATGCGAGTTTTTGATTGGGAATGCTTCAAGTATCAAAAGTCCAGTTAATAGTGTTCTCCACAACATAAATTCCACCATCGATCGAGTAGTCACACGCCAGTAAACGCCAGTTGCGTTCCTTTTCCCGTCATCATGCGGCGCCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAAGGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCTCTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCAAAAAAGAGAGGTCTGGATGCATGCGGAGCACAGCTGAAAGCG ATTTCCCTCACGATGAACGGTGTCGATTGTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCCCGAACCGTGCAGTGGCAGATTTAGCCGTAGTCTGATGCTTTCCGTCAACGAGCGACTGTTATCTACTGCTGGCGAAATATGTTATCAGCGTCAGCCCATCCAAGGATCCACGATCGGTATCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCGGCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGTTCGTAGCGTTCGAGCAGCTGCTTGTACGGTCGGAAATCGTATTCATCAGCTGTCCCCTAACCGACGCTACCGTTCGGATGTTTGGCCCGGGAAGCATTTGCAGCGATGAAGCCAA ]
[+] EMBL BX625876 [ CCATGCCCATCGCAAAGGTTCGTTGCACAATGCGAGTTTTTGATTGGGAATGCTTCAAGTATCAAAAGTCCAGTTAATAGTGTTCCCCACAACATAAATTCCACCATCGATCGAGTAGTCACACGCCAGT TGGAAAGT GTTTCTTTTCCCGTCATCATGCGGCGTCCCCGAGTGCTGGTGACTCATCATCAGGTGCAGCCGGTTGCATTGCAGCGTTTGCGCAAGGATTGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCTCTGCCC ]
consensusID : consensus_6325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 999 fasta sequence
[CGTTCCTTTTCCCGTCATCATGCGGCGCCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAAGGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCTCTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCTGGACCGAGAGGTCCTGGATGCATGCGGAGCACAGCTGAAAGCGATTTCCCTCACGATGAACGGTGTCGATTGTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCCCGAACCGTGCAGTGGCAGATTTAGCCGTAGGTCTGATGCTTTCCGTCAACGAGCGACTGTTATCTACTGCTGGCGAAATATGTTATCAGCGTCAGCCCATCCAAGGATCCACGATCGGTATCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCGGCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGTTCGTAGCGTTCGAGCAGCTGCTTGTACGGTCGGATTTCGTATTCATCAGCTGTCCCCTAACCGACGCTACCGTTCGGATGTTTGGCCGGGAAGCATTTGCAGCGATGAAGCCCACTGCCGTACTGATCAACGTTGCACGTGGCGCGATCGTCGACGAGGCTGCCCTGCTGGATGCGTTGAAAGGTGGACAAATAAGAGCGGCTGGATTGGATACTGTGACGGATGAACCATTACCGCCGGATAGTGAACTGTTTAACCTGCCAAACTGTGTGATTCTACCACACCTGGGAACGGCAACGGGGCGGACGCGCGACGAGATGGCTGTCCGAGCGGTGGAGAATTTAATGCACGGTTTGCGGAATGCAACGATGCCAGCACAATTTCAGACGCAATAAAGTTCATTCATTTCTTCTACCAAAAAAAAAAAAAAAAA]
[-] EMBL CNS09FM7 [CGTTCCTTTTCCCGTCATCATGCGGCGCCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAAGGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCTCTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCTGGACCGAGAGGTCCTGGATGCATGCGGAGCACAGCTGAAAGCGATTTCCCTCACGATGAACGGTGTCGATTGTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCCCGAACCGTGCAGTGGCAGATTTAGCCGTAGGTCTGATGCTTTCCGTCAACGAGCGACTGTTATCTACTGCTGGCGAAATATGTTATCAGCGTCAGCCCATCCAAGGATCCACGATCGGTATCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCGGCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGTTCGTAGCGTTCGAGCAGCTGCTTGTACGGTCGGATTTCGTATTCATCAGCTGTCCCCTAACCGACGCTACCGTTCGGATGTTTGGCCGGGAAGCATTTGCAGCGATGAAGCCCACTGCCGTACTGATCAACGTTGCACGTGGCGCGATCGTCGACGAGGCTGCCCTGCTGGATGCGTTGAAAGGTGGACAAATAAGAGCGGCTGGATTGGATACTGTGACGGATGAACCATTACCGCCGGATAGTGAACTGTTTAACCTGCCAAACTGTGTGATTCTACCACACCTGGGAACGGCAACGGGGCGGACGCGCGACGAGATGGCTGTCCGAGCGGTGGAGAATTTAATGCACGGTTTGCGGAATGCAACGATGCCAGCACAATTTCAGACGCAATAAAGTTCATTCATTTCTTCTACCAAAAAAAAAAAAAAAAA]
[-] EMBL CNS08O01 [ CCTTTTCCCGTCATCATGC GCGCCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAAGGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCTCTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCTGGACCGAGAGGTCCTGGATGCATGCGGAGCACAGCTGAAAGCGATTTCCCTCACGATGAACGGTGTCGATTGTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCCCGAACCGTGCAGTGGCAGATTTAGCCGTAGGTCTGATGCTTTCCGTCAACGAGCGACTGTTATCTACTGCTGGCGAAATATGTTATCAGCGTCAGCCCATCCAAGGATCCACGATCGGTATCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCGGCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGTTCGTAGCGTTCTTTTAGCTGCTTGTACGGTCGGATTTCGTATTCATCAGCTGTCCCCTAACCGACGCTACCGTTCGGATGTTTGGCCGGGAAGCATTTGCAGCGATGAAGCCAACTGCCGTACTGATCAACGTTGCACGTGGCGCGATCGTCGACGAGGCTGCCCTGCTGGATGCGTTGAAAGGTGGACAAATAAGAGCGGCTGGATTGGATACTGTGACGGATGAACCATTACCGCCGGATAGTGAACTGTTTAACCTGCCAAACTGTGTGATTCTACCACACCTGGGAACGGCAACGAAACGGACGCGCGACGAGATGGCTGTCCGAGCGGTGGAGAATTTAATGCACGGTTTGCGGAATGCAACGATGCCAGCACAA TTCAGACGCAATAAAGTTCATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6325#0 ACTAGATTCGACAATCAAAAATTTACAGCTGATAAAGAGCGATCTTCTTAATATACTTTC 60
consensus_6325#1 ------------------------------------------------------------
consensus_6325#0 ATCAACCTTCCCCATGCCCATCGCAAAGGTTCGTTGCACAATGCGAGTTTTTGATTGGGA 120
consensus_6325#1 ------------------------------------------------------------
consensus_6325#0 ATGCTTCAAGTATCAAAAGTCCAGTTAATAGTGTTCTCCACAACATAAATTCCACCATCG 180
consensus_6325#1 ------------------------------------------------------------
consensus_6325#0 ATCGAGTAGTCACACGCCAGTAAACGCCAGTTGCGTTCCTTTTCCCGTCATCATGCGGCG 240
consensus_6325#1 ---------------------------------CGTTCCTTTTCCCGTCATCATGCGGCG 27
***************************
consensus_6325#0 CCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAA 300
consensus_6325#1 CCCCCGAGTGCTAGTGACGCATCATCAGGTGCAGCCGGTTGCATTGCAGTGTTTGCGCAA 87
************************************************************
consensus_6325#0 GGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCT 360
consensus_6325#1 GGAATGTGATGTGATCGTCCCAGCAGTAGATTTCCCATCCCGTGCTCAAATACTCGATCT 147
************************************************************
consensus_6325#0 CTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCTGGACCGAGAGGT 420
consensus_6325#1 CTGCCCGGGCGTTGATGGGCTGCTGTGGACAAGCTACAAGATGAAGCTGGACCGAGAGGT 207
************************************************************
consensus_6325#0 C-TGGATGCATGCGGAG-ACAGCTGAAAGCGAATTTCCCTCACGATGAACGGTGTCGATT 478
consensus_6325#1 CCTGGATGCATGCGGAGCACAGCTGAAAGCGA-TTTCCCTCACGATGAACGGTGTCGATT 266
* *************** ************** ***************************
consensus_6325#0 GTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCC 538
consensus_6325#1 GTGTCGATGTGAAGGAGCTGGCTAGAAGAAACATTCTACTCGGACATACACCCTACATCC 326
************************************************************
consensus_6325#0 CGAACCGTGCAGTGGCAGATTTAGCCGTAG-TCTGATGCTTTCCGTCAACGAGCGACTGT 597
consensus_6325#1 CGAACCGTGCAGTGGCAGATTTAGCCGTAGGTCTGATGCTTTCCGTCAACGAGCGACTGT 386
****************************** *****************************
consensus_6325#0 TATCTACTGCTGGCGAAATATGTTATCAGCGTCA-CCCATCCAAGGATCCACGATCGGTA 656
consensus_6325#1 TATCTACTGCTGGCGAAATATGTTATCAGCGTCAGCCCATCCAAGGATCCACGATCGGTA 446
********************************** *************************
consensus_6325#0 TCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCG 716
consensus_6325#1 TCGTAGGGTTCGGTGGTATTGGCCAGTTGATTGCCAGCAGACTGCAAGCGTTCGATGTCG 506
************************************************************
consensus_6325#0 GCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGT 776
consensus_6325#1 GCTGCATCCTCTACTGTGGCCCGCGTCCCAAAGCGAGTGCAAACGCCTTCCATGCCCAGT 566
************************************************************
consensus_6325#0 TCGTAGCGTTCGAGCAGCTGCTTGTACGGTCGGATTTCGTATTCATCAGCTGTCCCCTAA 836
consensus_6325#1 TCGTAGCGTTCGAGCAGCTGCTTGTACGGTCGGATTTCGTATTCATCAGCTGTCCCCTAA 626
************************************************************
consensus_6325#0 CCGACGCTACCGTTCGGATGTTTGGCCGGGAAGCATTTGCAGCGATGAAGCCAACTGCCG 896
consensus_6325#1 CCGACGCTACCGTTCGGATGTTTGGCCGGGAAGCATTTGCAGCGATGAAGCCCACTGCCG 686
**************************************************** *******
consensus_6325#0 TACTGATCAACGTTGCACGTGGCGCGATCGTCGACGAGGCTGCCCTGCTGGATGCGTTGA 956
consensus_6325#1 TACTGATCAACGTTGCACGTGGCGCGATCGTCGACGAGGCTGCCCTGCTGGATGCGTTGA 746
************************************************************
consensus_6325#0 AAGGTGGACAAATAAGAGCGGCTGGATTGGATACTGTGACGGATGAAC-ATTAACAAAAA 1015
consensus_6325#1 AAGGTGGACAAATAAGAGCGGCTGGATTGGATACTGTGACGGATGAACCATTACCGCCGG 806
************************************************ **** *
consensus_6325#0 ATAAAAAATG-------------------------------------------------- 1025
consensus_6325#1 ATAGTGAACTGTTTAACCTGCCAAACTGTGTGATTCTACCACACCTGGGAACGGCAACGG 866
*** **
consensus_6325#0 ------------------------------------------------------------
consensus_6325#1 GGCGGACGCGCGACGAGATGGCTGTCCGAGCGGTGGAGAATTTAATGCACGGTTTGCGGA 926
consensus_6325#0 ------------------------------------------------------------
consensus_6325#1 ATGCAACGATGCCAGCACAATTTCAGACGCAATAAAGTTCATTCATTTCTTCTACCAAAA 986
consensus_6325#0 -------------
consensus_6325#1 AAAAAAAAAAAAA 999
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||