cluster # 6331

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Anopheles gambiae
cluster # 6331 cluster # 6331 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6331#0 length = 740 sequences # 1
consensus_6331#1 length = 628 sequences # 2

consensus_6331#2 length = 475 sequences # 1
consensus_6331#3 length = 441 sequences # 1

consensusID : consensus_6331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 740
fasta sequence

                              [ATCCCCCCGAGGTTANACATGCCTGGTTTTTTTTTNTTCTTTTTGGTTTGCAATTGCCTAAAATTTAGTGATGCCTATGTGATAATGTGTTTTATAATTTCGCTACCCTTACTAACTGGCTAAGTCGATCTAGACTAATTTTTAGTTAAGCTCCAAAATGTTGCCGACCTTTCTCAGACTCGTTGTAGAAGTAGATTTGAAAGACAAAAACAAAACGTTTCCTGTTTTCTCTACCATCTTCCTTTTTAAGCGAATTTNTTAGTAGCAATGTTTTGATNTTTTTTNCGTCAATTTAATGTNGTNTCTTACTCTATCTCCGGTNTGGATTGCGCCGTGATTGTCTATTTCTTATCCGTCACAGTGTTCGTGTGTCGTGTATGTTCTACAATCGTCNCTGGATTCGTCTATGTTCCGTTCGATTACTGTNNGTNTNCTATTTATGTACCCNTTCCCTTGTTCGCTCCCGNGTCNNTCATTCCAGTACGTACTTTACACTAATTATTATCAGCCCTGTCAGGCCACTGATTCCCCAAANCCCAATTAAGCCAATACCAANTNACTATTCATTAAGGGGTTGAACCTAACACTTGCNAACGCGAAAAGCCTTTTTGAACATCCTTATANAATGGTGTATTNCAAGATGTTCATCAGAGTTTGTGCACCTGCCTNTANGGNTTGGGGTTTGCACATTGCCCTAAAAANTTTACGGAGGTTGGCCCNAGTGTGTNNACACACTGGTG]

[+] EMBL AL932253             [ATCCCCCCGAGGTTANACATGCCTGGTTTTTTTTTNTTCTTTTTGGTTTGCAATTGCCTAAAATTTAGTGATGCCTATGTGATAATGTGTTTTATAATTTCGCTACCCTTACTAACTGGCTAAGTCGATCTAGACTAATTTTTAGTTAAGCTCCAAAATGTTGCCGACCTTTCTCAGACTCGTTGTAGAAGTAGATTTGAAAGACAAAAACAAAACGTTTCCTGTTTTCTCTACCATCTTCCTTTTTAAGCGAATTTNTTAGTAGCAATGTTTTGATNTTTTTTNCGTCAATTTAATGTNGTNTCTTACTCTATCTCCGGTNTGGATTGCGCCGTGATTGTCTATTTCTTATCCGTCACAGTGTTCGTGTGTCGTGTATGTTCTACAATCGTCNCTGGATTCGTCTATGTTCCGTTCGATTACTGTNNGTNTNCTATTTATGTACCCNTTCCCTTGTTCGCTCCCGNGTCNNTCATTCCAGTACGTACTTTACACTAATTATTATCAGCCCTGTCAGGCCACTGATTCCCCAAANCCCAATTAAGCCAATACCAANTNACTATTCATTAAGGGGTTGAACCTAACACTTGCNAACGCGAAAAGCCTTTTTGAACATCCTTATANAATGGTGTATTNCAAGATGTTCATCAGAGTTTGTGCACCTGCCTNTANGGNTTGGGGTTTGCACATTGCCCTAAAAANTTTACGGAGGTTGGCCCNAGTGTGTNNACACACTGGTG]




>consensus_6331#0
ATCCCCCCGAGGTTANACATGCCTGGTTTTTTTTTNTTCTTTTTGGTTTGCAATTGCCTA
AAATTTAGTGATGCCTATGTGATAATGTGTTTTATAATTTCGCTACCCTTACTAACTGGC
TAAGTCGATCTAGACTAATTTTTAGTTAAGCTCCAAAATGTTGCCGACCTTTCTCAGACT
CGTTGTAGAAGTAGATTTGAAAGACAAAAACAAAACGTTTCCTGTTTTCTCTACCATCTT
CCTTTTTAAGCGAATTTNTTAGTAGCAATGTTTTGATNTTTTTTNCGTCAATTTAATGTN
GTNTCTTACTCTATCTCCGGTNTGGATTGCGCCGTGATTGTCTATTTCTTATCCGTCACA
GTGTTCGTGTGTCGTGTATGTTCTACAATCGTCNCTGGATTCGTCTATGTTCCGTTCGAT
TACTGTNNGTNTNCTATTTATGTACCCNTTCCCTTGTTCGCTCCCGNGTCNNTCATTCCA
GTACGTACTTTACACTAATTATTATCAGCCCTGTCAGGCCACTGATTCCCCAAANCCCAA
TTAAGCCAATACCAANTNACTATTCATTAAGGGGTTGAACCTAACACTTGCNAACGCGAA
AAGCCTTTTTGAACATCCTTATANAATGGTGTATTNCAAGATGTTCATCAGAGTTTGTGC
ACCTGCCTNTANGGNTTGGGGTTTGCACATTGCCCTAAAAANTTTACGGAGGTTGGCCCN
AGTGTGTNNACACACTGGTG

consensusID : consensus_6331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [CGCAATGGAAAAATGATTTTTATTTTGCTCAATCAAGCTAAAATTTGCAAAGCGGTTGCGCTGTCACTAACGAACCGATTCCAAGAACCCATATACATTCTATTGTTTCCGCTTACTAGTTATCACATATTGTATCATTTCCATTTTGTTTGCTCTTGTTTGCTACGTATTATAACTGGTCGGCCCGCTCGCGTCGTATACTGGTTTTTCTCGTACGTCAAATCTATCGAAGCCAAAAAACAAACGCCACACACACACACTTATTGTTTATCTTGCTTTCTCTGCTCTTTTCCTATCGCACTGTTCGCTTTCCCTTTCGCACTACCACTCTACTTTTTGTCTTTTTGTTTTAAATTTAGCATGTTAGCCACTGATCCCAACCAACTAGCCATACAATATTATTAGGTTAACTACACTGCAAGCGAAGCTTTTACATCTTATAATGTGTTTTAAGATTTTTGATTTGCACTTCTTTTTTTTTTTTGTTTGCAATTGCCTAAAATTTAGTGATGCCTATGTGATAATGTGTTTTTTTTTATAATTTCGCTACCCTTACTAACTGGCTAAGTCGATCTAGACTAATTTTTAGTTAAGCTCCAAAATGTTGCCGACCTTTCTCAGACTCGTT]

[-] EMBL BM653971             [CGCAATGGAAAAATGATTTTTATTTTGCTCAATCAAGCTAAAATTTGCAAAGCGGTTGCGCTGTCACTAACGAACCGATTCCAAGAACCCATATACATTCTATTGTTTCCGCTTACTAGTTATCACATATTGTATCATTTCCATTTTGTTTGCTCTTGTTTGCTACGTATTATAACTGGTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BX608544             [        AAAAATGATTTTTATTTTGCTCAATCAAGCTAAAATTTGCAAAGCGGTTGCGCTGTCACTAACGAACCGATTCCAGGAACCCCTATACATTCTATTGTTTCCGCTTACTAGTTATCACATATTGTATCATTTCCATTTTGTTTGCTCTTGTTTGCTACGTATTATAACTGGTTATCCCGCTCGCGTCGTATACTGGTTTTTCTCGTACGTCAAATCTATCGAAGCCAAAAAACAAACGCCACACACACACACTTATTGTTTATCTTGCTTTCTCTGCTCTTTTCCTATCGCACTGTTCGCTTTCCCTTTCGCACTACCACTCTACTTTTTGTCTTTTTGTTTTAAATTTAGCATGTTAGCCACTGATCCCAACCAACTAGCCATACAATATTATTAGGTTAACTACACTGCAAGCGAAGCTTTTACATCTTATAATGTGTTTTAAGATTTTTGATTTGCACTTCTTTTTTTTTTTTGTTTGCAATTGCCTAAAATTTAGTGATGCCTATGTGATAATGTGTTTTTTTTTATAATTTCGCTACCCTTACTAACTGGCTAAGTCGATCTAGACTAATTTTTAGTTAAGCTCCAAAATGTTGCCGACCTTTCTCAGACTCGTT]




>consensus_6331#1
CGCAATGGAAAAATGATTTTTATTTTGCTCAATCAAGCTAAAATTTGCAAAGCGGTTGCG
CTGTCACTAACGAACCGATTCCAAGAACCCATATACATTCTATTGTTTCCGCTTACTAGT
TATCACATATTGTATCATTTCCATTTTGTTTGCTCTTGTTTGCTACGTATTATAACTGGT
CGGCCCGCTCGCGTCGTATACTGGTTTTTCTCGTACGTCAAATCTATCGAAGCCAAAAAA
CAAACGCCACACACACACACTTATTGTTTATCTTGCTTTCTCTGCTCTTTTCCTATCGCA
CTGTTCGCTTTCCCTTTCGCACTACCACTCTACTTTTTGTCTTTTTGTTTTAAATTTAGC
ATGTTAGCCACTGATCCCAACCAACTAGCCATACAATATTATTAGGTTAACTACACTGCA
AGCGAAGCTTTTACATCTTATAATGTGTTTTAAGATTTTTGATTTGCACTTCTTTTTTTT
TTTTGTTTGCAATTGCCTAAAATTTAGTGATGCCTATGTGATAATGTGTTTTTTTTTATA
ATTTCGCTACCCTTACTAACTGGCTAAGTCGATCTAGACTAATTTTTAGTTAAGCTCCAA
AATGTTGCCGACCTTTCTCAGACTCGTT

consensusID : consensus_6331#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [TTAAAACAAAAAGACAAAAAGTAGAGTGGTAGTGCGAAAGGGAAAGCGAACAGTGCGATAGAAATGGCGAGCAGCGATCGTACAATTATTTGTGCTGCCGCCAGAAGCTTGGTAACGTGAACCAGAGCGCGATGGAAGTGATCCTCCCACCTTCCCCTTTTCACAGTAAATCCTTCACCTTCACCCGGGGGTTTCTCGCGTGTCCGCATCTTAGATTGTAGGGTTTTAGCTGTAAAAAAAACAACAACAACAGAAACTGCTACCGTTTGGTGTAATGTTATTGTAATAATGATGTCGTGTAATAATTGCTTAAGGCCAACCAAACCACAGGCAAAGCTTTTTTTTTGTTTAACTTAGGTACTTTTACTACTATTATTGCAGTAATTAATGTAATGAAAATTATTATTATTAAAATTATTAATTATTATTATTATTATTATTATTATTATTGTACTAGCTACCAGTAAATTTTATT]

[+] EMBL BX616649             [TTAAAACAAAAAGACAAAAAGTAGAGTGGTAGTGCGAAAGGGAAAGCGAACAGTGCGATAGAAATGGCGAGCAGCGATCGTACAATTATTTGTGCTGCCGCCAGAAGCTTGGTAACGTGAACCAGAGCGCGATGGAAGTGATCCTCCCACCTTCCCCTTTTCACAGTAAATCCTTCACCTTCACCCGGGGGTTTCTCGCGTGTCCGCATCTTAGATTGTAGGGTTTTAGCTGTAAAAAAAACAACAACAACAGAAACTGCTACCGTTTGGTGTAATGTTATTGTAATAATGATGTCGTGTAATAATTGCTTAAGGCCAACCAAACCACAGGCAAAGCTTTTTTTTTGTTTAACTTAGGTACTTTTACTACTATTATTGCAGTAATTAATGTAATGAAAATTATTATTATTAAAATTATTAATTATTATTATTATTATTATTATTATTATTGTACTAGCTACCAGTAAATTTTATT]




>consensus_6331#2
TTAAAACAAAAAGACAAAAAGTAGAGTGGTAGTGCGAAAGGGAAAGCGAACAGTGCGATA
GAAATGGCGAGCAGCGATCGTACAATTATTTGTGCTGCCGCCAGAAGCTTGGTAACGTGA
ACCAGAGCGCGATGGAAGTGATCCTCCCACCTTCCCCTTTTCACAGTAAATCCTTCACCT
TCACCCGGGGGTTTCTCGCGTGTCCGCATCTTAGATTGTAGGGTTTTAGCTGTAAAAAAA
ACAACAACAACAGAAACTGCTACCGTTTGGTGTAATGTTATTGTAATAATGATGTCGTGT
AATAATTGCTTAAGGCCAACCAAACCACAGGCAAAGCTTTTTTTTTGTTTAACTTAGGTA
CTTTTACTACTATTATTGCAGTAATTAATGTAATGAAAATTATTATTATTAAAATTATTA
ATTATTATTATTATTATTATTATTATTATTGTACTAGCTACCAGTAAATTTTATT

consensusID : consensus_6331#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CCGCCCACGCGTCCGAACACATTATAAGATGTAAAAGCTTCGCTTGCAGTGTAGTTAACCTAATAATATTGTATGGCTAGTTGGTTGGGATCAGTGGCTAACATGCTAAATTTAAAACAAAAAGACAAAAAGTAGAGTGGTAGTGCGAAAGGGAAAGCGAACAGTGCGATAGGAAAAGAGCAGAGAAAGCAAGATAAACAATAAGTGTGTGTGTGTGGCGTTTGTTTTTTGGCTTCGATAGATTTGACGTACGAGAAAAACCAGTATACGACGCGAGCGGGATAACCAGTTATAATACGTAGCAAACAAGAGCAAACAAAATGGAAATGATACAATATGTGATAACTAGTAAGCGGAAACAATAGAATGTATAGGGGTTCCTGGAATCGGTTCGTTAGTGACAGCGCAACCGCTTTGCAAATTTTAGCTTGATTGAGCAAA]

[+] EMBL BM640516             [CCGCCCACGCGTCCGAACACATTATAAGATGTAAAAGCTTCGCTTGCAGTGTAGTTAACCTAATAATATTGTATGGCTAGTTGGTTGGGATCAGTGGCTAACATGCTAAATTTAAAACAAAAAGACAAAAAGTAGAGTGGTAGTGCGAAAGGGAAAGCGAACAGTGCGATAGGAAAAGAGCAGAGAAAGCAAGATAAACAATAAGTGTGTGTGTGTGGCGTTTGTTTTTTGGCTTCGATAGATTTGACGTACGAGAAAAACCAGTATACGACGCGAGCGGGATAACCAGTTATAATACGTAGCAAACAAGAGCAAACAAAATGGAAATGATACAATATGTGATAACTAGTAAGCGGAAACAATAGAATGTATAGGGGTTCCTGGAATCGGTTCGTTAGTGACAGCGCAACCGCTTTGCAAATTTTAGCTTGATTGAGCAAA]




>consensus_6331#3
CCGCCCACGCGTCCGAACACATTATAAGATGTAAAAGCTTCGCTTGCAGTGTAGTTAACC
TAATAATATTGTATGGCTAGTTGGTTGGGATCAGTGGCTAACATGCTAAATTTAAAACAA
AAAGACAAAAAGTAGAGTGGTAGTGCGAAAGGGAAAGCGAACAGTGCGATAGGAAAAGAG
CAGAGAAAGCAAGATAAACAATAAGTGTGTGTGTGTGGCGTTTGTTTTTTGGCTTCGATA
GATTTGACGTACGAGAAAAACCAGTATACGACGCGAGCGGGATAACCAGTTATAATACGT
AGCAAACAAGAGCAAACAAAATGGAAATGATACAATATGTGATAACTAGTAAGCGGAAAC
AATAGAATGTATAGGGGTTCCTGGAATCGGTTCGTTAGTGACAGCGCAACCGCTTTGCAA
ATTTTAGCTTGATTGAGCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6331#0      ATCCCCCCGAGGTTANACATGCCTGGTTTTTTTTTNTTCTTTTTGGTTTGCAATTGCCTA 60
consensus_6331#1      ----------CGCAATGGAAAAATGATTTTTATTTTGCTCAATCAAGCTAAAATTTGCAA 50
consensus_6331#2      ------------------------------------------TTAAAACAAAAAGACAAA 18
consensus_6331#3      ------------------------------------------------------------
                                                                                  

consensus_6331#0      AAATTTAGTGATGCCTATGTGATAATGTGTTTTATAATTTCGCTACCCTTACTAACTGGC 120
consensus_6331#1      AGCGGTTGCGCTGTCACT--AACGAACCGATTCCAAGAACCCATATACATTCTA-TTGTT 107
consensus_6331#2      AAGTAGAGTGGTA---GTGCGAAAGGGAAAGCGAACAGTGCGATAGAAATGGCG---AGC 72
consensus_6331#3      ---------------------------------------------------CCGCCCA-- 7
                                                                                  

consensus_6331#0      TAAGTCGATCTAGACTAATTTTTAGTTAAGCTCCAAAATGTTGCCGACCTTTCTCAGACT 180
consensus_6331#1      TCCGCTTA-CTAG-TTATCACATATTGTATCATTTCCATTTTGTTTGCTCTTGTTTGCTA 165
consensus_6331#2      AGCGATCGTACAA----TTATTTGTGCTGCCGCCAGAAGCTTGGTAACGTGAACCAGA-G 127
consensus_6331#3      CGCGTCCGAACACATTATAAGATGTAAAAGCTTCGCTTGCAGTGTAGT-TAACCTAATAA 66
                         *       *          *       *                             

consensus_6331#0      CGTTGTAGAAGTAGATTTGAAAGACAAAAACAAAACGTTTCCTGTTTTCTCTACCATCTT 240
consensus_6331#1      CGTATTATAACTGGTC------GGCCCGCTCGCGTCGTATACTGGTTTTTCTCGTACGT- 218
consensus_6331#2      CGCGATGGAAGTGATC----------------------CTCCCACCTTCCCCTTTTCAC- 164
consensus_6331#3      TATTGTATGGCTAGTTG---------------------GTTGGGATCAGTGGCTAACAT- 104
                           *     *                           *                    

consensus_6331#0      CCTTTTTAAGCGAATTTNTTAGTAGCAATGTTTTGATNTTTTTTNCGTCAATTTAATGTN 300
consensus_6331#1      ----------CAAATCTATCGAAGCCAAAAAACAAACGCCACACACACACACTTATTGTT 268
consensus_6331#2      --------AGTAAATCCTTCACCTTCACC-CGGGGGTTTCTCGCGTGTCCGCATCTTAGA 215
consensus_6331#3      --------GCTAAATTTAAAACAAAAAGACAAAAAGTAGAGTGGTAGTGCGAAAGGGAAA 156
                                  ***           *                                 

consensus_6331#0      GTNTCTTACTCTATCTCCGGTNTGGATTGCGC-CGTGATTGTCTATTTCTTATCCGTCAC 359
consensus_6331#1      -TATCTTGCTTTCTCTGCTCTTTTCCTATCGC-ACTGTTCGCTTTCCCTTTCGCACTACC 326
consensus_6331#2      TTGTAGGGTTTTAGCTGTAAAAAAAACAACAA-CAACAGAAACTGCTACCGTTTGGT-GT 273
consensus_6331#3      GCGAACAGTGCGATAGGAAAAGAGCAGAGAAAGCAAGATAAACAATAAGTGTGTGTGTGT 216
                                                                                  

consensus_6331#0      AGTGTTCGTGTGTCGTGTATGTTCTACAATCGTCNCTGGATTCGTCTATGTTCCGTTCGA 419
consensus_6331#1      ACTCTACTTTTTGTCTTTTTGTTTTAAATTTAGCATGTTAGCCACTGAT--CCCAACCAA 384
consensus_6331#2      AATGTTATTGTAATAATGATGTCGTGTAATAATTGCTTAAG--GCCAAC---CAAACCA- 327
consensus_6331#3      GGCGTTTGTTTTTTGGCTTCGATAGATTTGACGTACGAGAAAAACCAGTATACGACGCGA 276
                          *   * *         *                  *            *    *  

consensus_6331#0      TTACTGTNNGTNTNCTATTTATGTACCCNTTCCCTTGTTC--GCTCCCGNGTCNNTCATT 477
consensus_6331#1      CTAGCCATACAATATTATTAGGTTAACTACACTGCAAGCGAAGCTTTTACATCTTATAAT 444
consensus_6331#2      -CAGGCAAAGCTTTTTTTTTGTTTAACT------TAGGTA---CTTTTACTACTATTATT 377
consensus_6331#3      GCGGGATAACCAGTTATAATACGTAGCAAA--CAAGAGCAAACAAAATGGAAATGATACA 334
                                             ** *                              *  

consensus_6331#0      CCA-GTACGTACTTTACACTAATTATTATCAGCCCTGTCAGGCCACTGATTCCCCAAANC 536
consensus_6331#1      GTG-TTTTAAGATTTTTGATTTGCACTTCTTTTTTTTTTTTGTTTGCAATTGCCTAAAAT 503
consensus_6331#2      GCA-GTAATTAATGT--AATGAAAATTATTATTATTA--AAATTATTAATTATTATTATT 432
consensus_6331#3      ATATGTGATAACTAGTAAGCGGAAACAATAGAATGTATAGGGGTTCCTGGAATCGGTTCG 394
                           *      *           *          *                        

consensus_6331#0      CCAATTAAGCCAATACCAANTNACTATTCATTAAGGGGTTGAACCTAACACTTGCNAACG 596
consensus_6331#1      TTAGTGATGCCTATGTGATAATGTGTTTTTTTTTATAATTTCGCT--ACCCTTACTAACT 561
consensus_6331#2      ATTATTA--TTATTATTATTGTACTAGCTACCAGTAAATTTTATT--------------- 475
consensus_6331#3      TTAGTGACAGCGCAACCGCTTTGCAAATTTTAGCTTGATTGAGCAAA------------- 441
                          * *                               **                    

consensus_6331#0      CGAAAAGCCTTTTTGAACATCCTTATANAATGGTGTATTNCAAGATGTTCATCAGAGTTT 656
consensus_6331#1      GGCTAAGTCGATCTAGACTAATTTTTAGT----TAAGCTCCAAAATGTTGCCGACCTTTC 617
consensus_6331#2      ------------------------------------------------------------
consensus_6331#3      ------------------------------------------------------------
                                                                                  

consensus_6331#0      GTGCACCTGCCTNTANGGNTTGGGGTTTGCACATTGCCCTAAAAANTTTACGGAGGTTGG 716
consensus_6331#1      TCAGACTCGTT------------------------------------------------- 628
consensus_6331#2      ------------------------------------------------------------
consensus_6331#3      ------------------------------------------------------------
                                                                                  

consensus_6331#0      CCCNAGTGTGTNNACACACTGGTG 740
consensus_6331#1      ------------------------
consensus_6331#2      ------------------------
consensus_6331#3      ------------------------