cluster # 6332

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Anopheles gambiae
cluster # 6332 cluster # 6332 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6332#0 length = 765 sequences # 1

consensus_6332#1 length = 504 sequences # 4

consensusID : consensus_6332#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [ATCGCCAGGGTTAACGAAGNGAGTACGGAAGATTGAGGTGCACCTGNTTGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATACCCAGTGTTCGGTGCAGATACCTGCCAGCTGGGAAACCTGGCAAACAGAAGGTAGTGGGGAAACCAATTCCCAAGATTACCCTGGATACCTGCCAGGGGTGATATCGTGCATATTCATCTTTGATGTGCGCGTGTNTACGGCTCGCACTCTTTATGCGAACTGGATCAGTCGATACTGTGGACGAAGCGTTGGCGAATCATTGAGGCGACAGCAGGCACTTGGCGTCAAATCCAGACTCACTTGTCAAGAGTACTGCCCGACAACCGGACACAACACCGTATACGCCGGTGCGGCGACCCTAAATATGCGCTGCAAAGGTTCGGCAACCGGCGCGCAGNCNTAAGCTGTGGGTCACACTGACGGGAAAAGAAAGCGGCAGGCCAAAAGGAAGCNCGTAACCCAAAACGAGAACAGTGCAGGCGTAGAGCCTNGACTCACGGTTTAAAAAAACCCAGGCNTTGNANACCCGGGTCCTGGTGAGACTGACTTGACGGAACGACACAGGCAGAAACCCAGGAGCAAAGNCNGTACAAGAACCAACACCGTGGGAAAGCCCAAAGGAAGCTCTGAACGCGAAAGTGGCANAGAGGGCGTGTACAGGAAGCAAGGTCACAAGGAAA]

[+] EMBL AL697592             [ATCGCCAGGGTTAACGAAGNGAGTACGGAAGATTGAGGTGCACCTGNTTGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATACCCAGTGTTCGGTGCAGATACCTGCCAGCTGGGAAACCTGGCAAACAGAAGGTAGTGGGGAAACCAATTCCCAAGATTACCCTGGATACCTGCCAGGGGTGATATCGTGCATATTCATCTTTGATGTGCGCGTGTNTACGGCTCGCACTCTTTATGCGAACTGGATCAGTCGATACTGTGGACGAAGCGTTGGCGAATCATTGAGGCGACAGCAGGCACTTGGCGTCAAATCCAGACTCACTTGTCAAGAGTACTGCCCGACAACCGGACACAACACCGTATACGCCGGTGCGGCGACCCTAAATATGCGCTGCAAAGGTTCGGCAACCGGCGCGCAGNCNTAAGCTGTGGGTCACACTGACGGGAAAAGAAAGCGGCAGGCCAAAAGGAAGCNCGTAACCCAAAACGAGAACAGTGCAGGCGTAGAGCCTNGACTCACGGTTTAAAAAAACCCAGGCNTTGNANACCCGGGTCCTGGTGAGACTGACTTGACGGAACGACACAGGCAGAAACCCAGGAGCAAAGNCNGTACAAGAACCAACACCGTGGGAAAGCCCAAAGGAAGCTCTGAACGCGAAAGTGGCANAGAGGGCGTGTACAGGAAGCAAGGTCACAAGGAAA]




>consensus_6332#0
ATCGCCAGGGTTAACGAAGNGAGTACGGAAGATTGAGGTGCACCTGNTTGAGCTGTCTAC
AAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGC
CAAGAGTCGACTGCACGGCTCATACCCAGTGTTCGGTGCAGATACCTGCCAGCTGGGAAA
CCTGGCAAACAGAAGGTAGTGGGGAAACCAATTCCCAAGATTACCCTGGATACCTGCCAG
GGGTGATATCGTGCATATTCATCTTTGATGTGCGCGTGTNTACGGCTCGCACTCTTTATG
CGAACTGGATCAGTCGATACTGTGGACGAAGCGTTGGCGAATCATTGAGGCGACAGCAGG
CACTTGGCGTCAAATCCAGACTCACTTGTCAAGAGTACTGCCCGACAACCGGACACAACA
CCGTATACGCCGGTGCGGCGACCCTAAATATGCGCTGCAAAGGTTCGGCAACCGGCGCGC
AGNCNTAAGCTGTGGGTCACACTGACGGGAAAAGAAAGCGGCAGGCCAAAAGGAAGCNCG
TAACCCAAAACGAGAACAGTGCAGGCGTAGAGCCTNGACTCACGGTTTAAAAAAACCCAG
GCNTTGNANACCCGGGTCCTGGTGAGACTGACTTGACGGAACGACACAGGCAGAAACCCA
GGAGCAAAGNCNGTACAAGAACCAACACCGTGGGAAAGCCCAAAGGAAGCTCTGAACGCG
AAAGTGGCANAGAGGGCGTGTACAGGAAGCAAGGTCACAAGGAAA

consensusID : consensus_6332#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 504
fasta sequence

                              [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATCCCAGTGTTCGGTGCAGATACCGCCCAGCGGGAAACCGGCCAAACAGAAGGTAGTGGGGAAACCACTTCCCAAGATTCCCTGGATACCGCAGGGTGATTCGTGCAATTTCATCTTTGATGT]

[+] EMBL AGA280668            [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCACTACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCTCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTG                                                                                                                                   ]
[+] EMBL AGA283431            [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCANAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCCACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGGGCCGCTG                                                                                                                                                             ]
[+] EMBL AGA280381            [TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATTTTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATC                                                                                                                                                                            ]
[+] EMBL AGA280409            [                                                     TGATACTGAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACTGATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTACAAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGCCAAGAGTCGACTGCACGGCTCATCCCAGTGTTCGGTGCAGATACCGCCCAGCGGGAAACCGGCCAAACAGAAGGTAGTGGGGAAACCACTTCCCAAGATTCCCTGGATACCGCAGGGTGATTCGTGCAATTTCATCTTTGATGT]




>consensus_6332#1
TGAAGGCGGAAAGATGCTGCTGTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGATACT
GAACTTGATCAACGGTCTCGCGGTAAGTGATATTGCCGCGATCCGGGAGGAGTCGGAACT
GATCAGCATCAGCAAGAAGGTGATGCTGCTGGAGCAATACGAGCGCGGAGTGGCGAACGT
GTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTTCTTCGCAGAGTACGACTGTCG
CATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGTGCACCTGCGGGAGCTGTCTAC
AAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGCCGCTGCGCTTAACAATGC
CAAGAGTCGACTGCACGGCTCATCCCAGTGTTCGGTGCAGATACCGCCCAGCGGGAAACC
GGCCAAACAGAAGGTAGTGGGGAAACCACTTCCCAAGATTCCCTGGATACCGCAGGGTGA
TTCGTGCAATTTCATCTTTGATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6332#0      ATCGCCAGGGTTAACGAAGNGAGTACGGAAGATTGAGGTGCACCTGNTTGAGCTGTCTAC 60
consensus_6332#1      -----------------------------------------------------------T 1
                                                                                  

consensus_6332#0      AAAGGCTGGCAAGGGTACTGCTCCAGTCAATCCCGGTGGTGC-CGCTGCGCTTAACA--A 117
consensus_6332#1      GAAGGCGG--AAAGATGCTGCT---GTTCATTCTGTTTATGTTCTTTGCGCCGATCGTGA 56
                       ***** *  ** * * *****   **  ** * * *  **  *  *****  * *   *

consensus_6332#0      TGCCAAGAGTCGACTGCACGGCTCATACCCAGTGTTCGGTGCAGATACCTGCCAGCTGGG 177
consensus_6332#1      TACTGA-ACTTGATCAACGGTCTCGCGGTAAGTGAT-ATTGCCGCGATCCGGGAGGAGTC 114
                      * *  * * * **      * ***      **** *   *** *  * * *  **  *  

consensus_6332#0      AAACCTGGCAAACAGAAGGTAGTGGGGAAACCAATTCCCAAGATTACCCTGGATACCTGC 237
consensus_6332#1      GGAACTGATCAGCAT----CAGCAAGAAGGTGATGCTGCTGGAGCA------ATACGAGC 164
                        * ***   * **      **   * *    *     *  **  *      ****  **

consensus_6332#0      CAGGGGTGATATCGTGCATATTCATCTTTGATGTGCGCGTGTNTACGGCTCGCACTCTTT 297
consensus_6332#1      GCGGAGTG-----GCGAACGTGTATCCCGGATGGTTGCGACGGTGCTTTCCGAGGCCCTT 219
                        ** ***     * * *  *  ***   ****   ***    * *    **    * **

consensus_6332#0      AT--GCGAACTGGATCAGTCGATACTGTG----GACGAAGCGTTGGCGAATCATTGAGGC 351
consensus_6332#1      CTTCGCAGAGTACGACTGTCGCATCCATGTCAAGACGAAGGAGTACCGGAAGATTGAGGT 279
                       *  **  * *    * ****   *  **    *******   *  ** *  ******* 

consensus_6332#0      GACAGCAGGCACTTGGCGTCAAATCCAGACTCACTTGTCAAGAGTACTGCCCGACAACCG 411
consensus_6332#1      G-CACCTG----CGGGAGCTGTCTACAAAGGC---TGGCAAGGGTACTGCTC--CAGTC- 328
                      * ** * *      ** *     * ** *  *   ** **** ******* *  **  * 

consensus_6332#0      GACACAACACCGTATACGCCGGTGCGGCGACCCTAAATATGCGCTGCAAAGGTTCGGCAA 471
consensus_6332#1      -----AATCCCGGTGGTGCCGCTGCG-----CTTAACAATGC----CAAGAGTCGACTGC 374
                           **  ***     **** ****     * ***  ****    ***  **       

consensus_6332#0      CCGGCGCGCAGNCNTAAGCTGTGGGTCACACTGACGGGAAAAGAAAGCGGCAGGCCAAAA 531
consensus_6332#1      ACGGCTCATCCCAGTGTTCGGTGCAG-ATACCGCCCAGCGG-GAAACCGGCCAAACAGAA 432
                       **** *       *   * ***    * ** * *  *    **** ****    ** **

consensus_6332#0      GGAAGCNCGTAACCCAAAACGAGAACAGTGCAGGCGTAGAGCCTNGACTCACGGTTTAAA 591
consensus_6332#1      GGTAGTGGGGAAACCACTTCCC-AAGATTCCCTGGATACCGCAGGG-----TGATTCGTG 486
                      ** **   * ** ***   *   ** * * *  *  **  **   *      * **    

consensus_6332#0      AAAACCCAGGCNTTGNANACCCGGGTCCTGGTGAGACTGACTTGACGGAACGACACAGGC 651
consensus_6332#1      CAATTTCATCTTTGATGT------------------------------------------ 504
                       **   **    *                                               

consensus_6332#0      AGAAACCCAGGAGCAAAGNCNGTACAAGAACCAACACCGTGGGAAAGCCCAAAGGAAGCT 711
consensus_6332#1      ------------------------------------------------------------
                                                                                  

consensus_6332#0      CTGAACGCGAAAGTGGCANAGAGGGCGTGTACAGGAAGCAAGGTCACAAGGAAA 765
consensus_6332#1      ------------------------------------------------------