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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence
[GCAGAATTGCCCGAGGTTACTTAGTAAACATCTAAATTTTAGTCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGACTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCTGTCCTGTCCTGGCTGGTCATGGAGGTAGCGGCGGCGGTGGCTGGCTACAGCACGGTGGTGGCGGTGGCTACAGCAGGGGCGGTACTCGAGCGGCTGGCGTGATAACATCCGAGACTGGCAGTGNAGTGCTGAGAAGGTTAGGCTAACGGCCTGGCACNAGACGTTCAGAGCACAGCTTATCTTACCTGAGACTACGATCATATACGTACAGNTATCTTCAGAAGCCGNGCCAGGCTGTGCTGNGCATAACCCAAGAGCCAGTNCACCAGTGAACCGCGCTTGTCCAGAAACACCTTCGCGGCAAAGNGCGCCCTTGAACACAGTTCCGGAATTCACTGCAAGGACCTTGGCCTTGCACACACGGACAACAGTTTCCGCACCCCAAGGAANTTTCCCTTGGCGCATTCCCGGCCTGGCAAGGGCACAAAGGCACCAAGAGTACAGAATNACAGNANCCNCGANATCCAGGNTACCCGANATNACCCGCATATACNNGATCAACCCCNGGGAGGTTGGCGGANAATAACNACCTGGGCAGGAAACGAGGGACTNTAAACCACCCNCCCCGGGACTTACCCACCGNGACCCAAACGCCCGGTAACCCCCCCGGGACNGACTAAACNGCACCTACAAACNCCAGCAGGAAGCANCCACNCCGGGCAGCACGGNNCATCCACCCCCAGCGAGAGCAACCACCCAGNCTCNAAACCCCNCGGGGCACACCCCNCCAAACCCCCNGGGACTCCCCCTATCCCACCAANNAAGACGCCTTCAACACCGACGCACCGAGCTNACCAC]
[+] EMBL AL694588 [GCAGAATTGCCCGAGGTTACTTAGTAAACATCTAAATTTTAGTCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGACTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCTGTCCTGTCCTGGCTGGTCATGGAGGTAGCGGCGGCGGTGGCTGGCTACAGCACGGTGGTGGCGGTGGCTACAGCAGGGGCGGTACTCGAGCGGCTGGCGTGATAACATCCGAGACTGGCAGTGNAGTGCTGAGAAGGTTAGGCTAACGGCCTGGCACNAGACGTTCAGAGCACAGCTTATCTTACCTGAGACTACGATCATATACGTACAGNTATCTTCAGAAGCCGNGCCAGGCTGTGCTGNGCATAACCCAAGAGCCAGTNCACCAGTGAACCGCGCTTGTCCAGAAACACCTTCGCGGCAAAGNGCGCCCTTGAACACAGTTCCGGAATTCACTGCAAGGACCTTGGCCTTGCACACACGGACAACAGTTTCCGCACCCCAAGGAANTTTCCCTTGGCGCATTCCCGGCCTGGCAAGGGCACAAAGGCACCAAGAGTACAGAATNACAGNANCCNCGANATCCAGGNTACCCGANATNACCCGCATATACNNGATCAACCCCNGGGAGGTTGGCGGANAATAACNACCTGGGCAGGAAACGAGGGACTNTAAACCACCCNCCCCGGGACTTACCCACCGNGACCCAAACGCCCGGTAACCCCCCCGGGACNGACTAAACNGCACCTACAAACNCCAGCAGGAAGCANCCACNCCGGGCAGCACGGNNCATCCACCCCCAGCGAGAGCAACCACCCAGNCTCNAAACCCCNCGGGGCACACCCCNCCAAACCCCCNGGGACTCCCCCTATCCCACCAANNAAGACGCCTTCAACACCGACGCACCGAGCTNACCAC]
consensusID : consensus_6337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence
[GCCAAGAATCGCGCACGAGGCTCGCTTCAGTAAACATCTAAATTTTAGTCCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGGAAAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTCCGGTAGCTACGGCCCGCCGTCCGGTTCGTACGGCCCACCGTCCTCCAGCTACGGCGTCCCGTCCGGTGGCCACCGTGTCGTCGGCATCGACCTCGAGGGCGTCAAGCAAGCCATCCAGGTCGCCCAGTTCCTGCAGACTTCGTCCGCTTCGGTCCGTCCGGTTCGTACGGTGCGCCGTCCGTTGCCGTCGGGTCGTACGGTGCCCGTCGGCCGTTCCGGGTTCGGTACGGTGCGCATGGCCATCAGACTANGGGCTCGTNTAGATCTCGGTAACACGGATAATGGGNATACANATGCAACGNAAATCAATNGCGCG]
[+] EMBL BX467412 [GCCAAGAATCGCGCACGAGGCTCGCTTCAGTAAACATCTAAATTTTAGTCCCCGTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGGAAAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTCCGGTAGCTACGGCCCGCCGTCCGGTTCGTACGGCCCACCGTCCTCCAGCTACGGCGTCCCGTCCGGTGGCCACCGTGTCGTCGGCATCGACCTCGAGGGCGTCAAGCAAGCCATCCAGGTCGCCCAGTTCCTGCAGACTTCGTCCGCTTCGGTCCGTCCGGTTCGTACGGTGCGCCGTCCGTTGCCGTCGGGTCGTACGGTGCCCGTCGGCCGTTCCGGGTTCGGTACGGTGCGCATGGCCATCAGACTANGGGCTCGTNTAGATCTCGGTAACACGGATAATGGGNATACANATGCAACGNAAATCAATNGCGCG]
consensusID : consensus_6337#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence
[ATCGCCCGAGGNTCAGTAACATCTAAATTTTAGTCCCCGTGGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCA-GGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGNNNAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTNCNGTAGCTAC]
[+] EMBL AL934543 [ATCGCCCGAGGNTCAGTAACATCTAAATTTTAGTCCCCGTGGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCA GGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGC ]
[+] EMBL BX624268 [ AACATCTAAATTTTAGTCCCCGNTGTTTTTTCTTCTTCTCCATCCCCTACCTTAAGTGAAATGAACAGCTTTGCCGTGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGACCTCCGAAGGGCTGAACGTCGATCCGCAGCTGCTGAACGAAATTCGCCAGATTCTGCTCCGCGAGNNNAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTTGGAGGCTACCCGTCCGCACCGTNCNGTAGCTAC]
consensusID : consensus_6337#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[CCGCCCACGCGTCCGGTCACACACTGTAGCTCTGAGAGTAAAAGTGCGTCCGAAAATGTCGCACCACCACAAGCAGACGTCAACACACACACGCGGCCAATCCTTCACAATTGCTCGGAGCATTAATTGGAGCAAAAGCTAACGATTTTTCCTTCTCGGTTTTCACAGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGAACCTCCGAAGGTCTGAACGTCGATCCGCAGCTGCTGAACGAGATTCGCCAGATTC]
[+] EMBL BM635486 [CCGCCCACGCGTCCGGTCACACACTGTAGCTCTGAGAGTAAAAGTGCGTCCGAAAATGTCGCACCACCACAAGCAGACGTCAACACACACACGCGGCCAATCCTTCACAATTGCTCGGAGCATTAATTGGAGCAAAAGCTAACGATTTTTCCTTCTCGGTTTTCACAGTTTTTGGCGTTCGCCTCGCTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCGTCCGTCCGGCGGTCATGGAGGTAGCGGCGGCGGTGGCGGCTACAGCCACGGTGGTGGCGGTGGCTACAGCCAGGGCGGCTACTCGAGCGGCGGCGGCTACTCGAGCGGAGGAGGCGGCGGTGGCTACGCCGCCAGCGTCGGCAGCTTCTCCGGCTCGTCTTCGTCGTTCTCGAGCGGCGGCGGCGGCTACCAGGCCGTCCCGGCCGGTGTCCAGAACCTCCGAAGGTCTGAACGTCGATCCGCAGCTGCTGAACGAGATTCGCCAGATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6337#1 -----------------------------------GCCAAGAATCGCGCACGAGGCTCGC 25
consensus_6337#2 --------------------------------------------ATCGCCCGAGGNTCAG 16
consensus_6337#3 CCGCCCACGCGTCCGGTCACACACTGTAGCTCTGAGAGTAAAAGTGCGTCCGAAAATGTC 60
consensus_6337#0 ---------------------------------------GCAGAATTGCCCGAGGTTACT 21
* *** *
consensus_6337#1 TTCAGTAAACATCTAAATTTTAGTCCCC----GTG-TTTTTTCTTC-----TTCTCCATC 75
consensus_6337#2 T------AACATCTAAATTTTAGTCCCC----GTGGTTTTTTCTTC-----TTCTCCATC 61
consensus_6337#3 GCACCACCACAAGCAGACGTCAACACACACACGCGGCCAATCCTTCACAATTGCTCGGAG 120
consensus_6337#0 T--AGTAAACATCTAAATTTTAGTCCC-----GTG-TTTTTTCTTC-----TTCTCCATC 68
*** * * * * * * * * **** * ***
consensus_6337#1 CCCTACCTTAAGTGAAA-TGAACAGCTTTGCCGT-------------GTTTTTGGCGTTC 121
consensus_6337#2 CCCTACCTTAAGTGAAA-TGAACAGCTTTGCCGT-------------GTTTTTGGCGTTC 107
consensus_6337#3 CATTAATTGGAGCAAAAGCTAACGATTTTTCCTTCTCGGTTTTCACAGTTTTTGGCGTTC 180
consensus_6337#0 CCCTACCTTAAGTGAAA-TGAACAGCTTTGCCGT-------------GTTTTTGGCGTTC 114
* ** * ** *** *** *** ** * *************
consensus_6337#1 GCCTCG-CTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACC-GTC 179
consensus_6337#2 GCCTCG-CTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACC-GTC 165
consensus_6337#3 GCCTCG-CTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACC-GTC 238
consensus_6337#0 GCCTCGACTGGCGGCCATTGCCGTTGCGGAACCACCGTCCCCGTACAGCTACAACCTGTC 174
****** ************************************************* ***
consensus_6337#1 C-GTCCGG--CGGTCATGGAGGTAGCGGCGGCGGTGGC-GGCTACAGCCACGGTGGTGGC 235
consensus_6337#2 C-GTCCGG--CGGTCATGGAGGTAGCGGCGGCGGTGGC-GGCTACAGCCACGGTGGTGGC 221
consensus_6337#3 C-GTCCGG--CGGTCATGGAGGTAGCGGCGGCGGTGGC-GGCTACAGCCACGGTGGTGGC 294
consensus_6337#0 CTGTCCTGGCTGGTCATGGAGGTAGCGGCGGCGGTGGCTGGCTACAGC-ACGGTGGTGGC 233
* **** * *************************** ********* ***********
consensus_6337#1 GGTGGCTACAGCCAGGGCGGCTACTCGAGCGGC-GGCG----GCTACTCGAG-----CGG 285
consensus_6337#2 GGTGGCTACAGCCAGG-CGGCTACTCGAGCGGC-GGCG----GCTACTCGAG-----CGG 270
consensus_6337#3 GGTGGCTACAGCCAGGGCGGCTACTCGAGCGGC-GGCG----GCTACTCGAG-----CGG 344
consensus_6337#0 GGTGGCTACAGCAGGGGCGG-TACTCGAGCGGCTGGCGTGATAACATCCGAGACTGGCAG 292
************ ** *** ************ **** * **** * *
consensus_6337#1 AGGAG-GCGGCGGTGGCTACGCCGCCAGCGT--CGGCAGCTTCTC------CGGCTCGTC 336
consensus_6337#2 AGGAG-GCGGCGGTGGCTACGCCGCCAGCGT--CGGCAGCTTCTC------CGGCTCGTC 321
consensus_6337#3 AGGAG-GCGGCGGTGGCTACGCCGCCAGCGT--CGGCAGCTTCTC------CGGCTCGTC 395
consensus_6337#0 TGNAGTGCTGAGAAGGTTAGGCTAACGGCCTGGCACNAGACGTTCAGAGCACAGCTTATC 352
* ** ** * * ** ** ** * ** * * ** ** * *** **
consensus_6337#1 TTCGTCGT--TCTCGAGCGGCGGCG-GCGGCTACC-----AGGCCGTCCCGGCCGGTGTC 388
consensus_6337#2 TTCGTCGT--TCTCGAGCGGCGGCG-GCGGCTACC-----AGGCCGTCCCGGCCGGTGTC 373
consensus_6337#3 TTCGTCGT--TCTCGAGCGGCGGCG-GCGGCTACC-----AGGCCGTCCCGGCCGGTGTC 447
consensus_6337#0 TTACCTGAGACTACGATCATATACGTACAGNTATCTTCAGAAGCCGNGCCAGGCTGTGCT 412
** * *** * ** * * ** * * **** ** * * ***
consensus_6337#1 CAG-A-CCTCCGAAGGGCTGAACGTCGAT---CCGCAGCTGCTGAACGAAA--TTCGC-- 439
consensus_6337#2 CAG-A-CCTCCGAAGGGCTGAACGTCGAT---CCGCAGCTGCTGAACGAAA--TTCGC-- 424
consensus_6337#3 CAG-AACCTCCGAAGGTCTGAACGTCGAT---CCGCAGCTGCTGAACGAGA--TTCGC-- 499
consensus_6337#0 GNGCATAACCCAAGAGCCAGTNCACCAGTGAACCGCGCTTGTCCAGAAACACCTTCGCGG 472
* * ** * * * * * * * **** ** * * * *****
consensus_6337#1 CAGATTCTGCTCCGCGAGGAAAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTT 499
consensus_6337#2 CAGATTCTGCTCCGCGAGNNNAGCCAGTCGTCGTCGTCGTCGTCGTCGTCCGGTGGATTT 484
consensus_6337#3 CAGATTC----------------------------------------------------- 506
consensus_6337#0 CAAAGNGCGCCCTTGAACACAGTTCCGGAATTCACTGCAAGGACCTTGGCCT-TGCACAC 531
** *
consensus_6337#1 GGAGGCTACCCGTCCGCACCGTCCGGTAGCTACGGCCCGCCGTCCGGTTCGTACGGCCCA 559
consensus_6337#2 GGAGGCTACCCGTCCGCACCGTNCNGTAGCTAC--------------------------- 517
consensus_6337#3 ------------------------------------------------------------
consensus_6337#0 ACGGACAACAGTTTCCGCACCCCAAGGAANTTTCCCTTGGCGCATTCCCGGCCTGGCAAG 591
consensus_6337#1 CCGTCCTCCAGCTACGGCGTCCCGTCCGGTGGCCACCGTGTCGTCGGCATCGACCTCGAG 619
consensus_6337#2 ------------------------------------------------------------
consensus_6337#3 ------------------------------------------------------------
consensus_6337#0 GGCACAAAGGCACCAAGAGTACAGAATNACAGNANCCNCGANATCCAGGNTACCCGANAT 651
consensus_6337#1 GGCGTCAAGCAAGCCATCCAGGTCGCCCAGTTCCTGCAGACTTCGTCCGCTTCGGTCCGT 679
consensus_6337#2 ------------------------------------------------------------
consensus_6337#3 ------------------------------------------------------------
consensus_6337#0 NACCCGCATATACNNGATCAACCCCNGGGAGGTTGGCGGANAATAACNACCTGGGCAGGA 711
consensus_6337#1 CCGGTTCGTACGGTGCGCCGTCCGTTGCCGTCGGGTCGTACGGTGCCCGTCGGCCGTTCC 739
consensus_6337#2 ------------------------------------------------------------
consensus_6337#3 ------------------------------------------------------------
consensus_6337#0 AACGAGGGACTNTAAACCACCCNCCCCGGGACTTACCCACCGNGACCCAAACGCCCGGTA 771
consensus_6337#1 GGGTTCGGTACGGTGCGCATGGCCATCAGACTANGGGCTCGTNTAGATCTCGGTAACACG 799
consensus_6337#2 ------------------------------------------------------------
consensus_6337#3 ------------------------------------------------------------
consensus_6337#0 ACCCCCCCGGGACNGACTAAACNGCACCTACAAACNCCAGCAGGAAGCANCCACNCCGGG 831
consensus_6337#1 GATAATGGGNATACANATGCAACGNAAATCAATNGCGCG--------------------- 838
consensus_6337#2 ------------------------------------------------------------
consensus_6337#3 ------------------------------------------------------------
consensus_6337#0 CAGCACGGNNCATCCACCCCCAGCGAGAGCAACCACCCAGNCTCNAAACCCCNCGGGGCA 891
consensus_6337#1 ------------------------------------------------------------
consensus_6337#2 ------------------------------------------------------------
consensus_6337#3 ------------------------------------------------------------
consensus_6337#0 CACCCCNCCAAACCCCCNGGGACTCCCCCTATCCCACCAANNAAGACGCCTTCAACACCG 951
consensus_6337#1 ------------------
consensus_6337#2 ------------------
consensus_6337#3 ------------------
consensus_6337#0 ACGCACCGAGCTNACCAC 969
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||