These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 821 fasta sequence [CCGCCCACGCGTCCGAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATACCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTAAGGATGCTTTAGCAAAGATTAAGCGTTTTTCGTGTGTCTCTCCATACTTGGGGAGCTTACCGAAAAGGTTATATTTTTACAAACGCACTCCAATTCGTTTCTATTTCGGTTCTAAAATATGTTTTTTTTTTTTGCATTACAACGCCGTCGTAATGTATGGGTGAACTGAACAGTTCAAATTGCCTTGCATTGGTAGCGATCGTTCTATTAAAAAAAAAAAAAACAGGATTTTTGCGGGCCACCACCTTTCCACAGCCCTGCGTATGAGGGGGCGGCTTGGTCCCCTTTCTAGATTTGATCCCATGGCGGGCTTGCTGCAGAGTCGCGTACGTACAGCTCGACGACTGT] [+] EMBL BM636927 [CCGCCCACGCGTCCGAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGA ] [+] EMBL BM578906 [ ccgCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATACCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTAAGGATGCTTTAGCAAAGATTAAGCGTTTTTCGTGTGTCTCTCCATACTTGGGGAGCTTACCGAAAAGGTTATATTTTTACAAACGCACTCCAATTCGTTTCTATTTCGGTTCTAAAATATGTTTTTTTTTTTTGCATTACAACGCCGTCGTAATGTATGGGTGAACTGAACAGTTCAAATTGCCTTGCATTGGTAGCGATCGTTCTATTAAAAAAAAAAAAAACAGGATTTTTGCGGGCCACCACCTTTCCACAGCCCTGCGTATGAGGGGGCGGCTTGGTCCCCTTTCTAGATTTGATCCCATGGCGGGCTTGCTGCAGAGTCGCGTACGTACAGCTCGACGACTGT] consensusID : consensus_6339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence [GGCCACCGATCCGCACCACGACCATGATGAACCAACCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACA-CA--CCCCCACACCCACACCTTAACAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACTCACCCGGTGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGAGAGAGAGCGG] [-] EMBL BM654207 [GGCCACCGATCCGCACCACGACCATGATGAACCAACCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACA CA CCCCCACACCCACACCTTAACAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACTCACCCGG ] [-] EMBL BM580453 [ CATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACACCACCCCCCCACACCCACACCTTAACAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATACCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGAGAGAGAGCGG] consensusID : consensus_6339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [GACCCACGCGTCCGGATGAACCAGCCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACACACCCCCACACCCACACCTTAACAAAGAAATGCTGCGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCG] [+] EMBL BM627914 [GACCCACGCGTCCGGATGAACCAGCCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCATCATCATCATACTACGGAACCGAATAGCCATCATCATCATCATGCACAGCTGCACCATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCAGCACGAAAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGCAGCACCCGAAGACGACGACGATGGAAGATAAAACTTAACTCCAAAAGCTACTCCAACGGGGTAAGAAGAGGGGTCAGTCGCTGCAACAGCTGCATGCACGATACACAAACACACCCCCACACCCACACCTTAACAAAGAAATGCTGCGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTTTATTCCATTTTTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6339#1 ------------------------------------------------------------ consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 CCGCCCACGCGTCCGAAAGAAATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTAC 60 consensus_6339#1 ----------------------------------------GGCCACCGATCCGCACCACG 20 consensus_6339#2 -----------------------------------------------GACCCACGC---- 9 consensus_6339#0 CACAAAACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTAC 120 * ** * consensus_6339#1 ACCATGATG--AACCAACCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCA 78 consensus_6339#2 GTCCGGATG--AACCAGCCGTGCTAGAGCCTCATCATCCCAACCATCCTCATCATCATCA 67 consensus_6339#0 AACTTTATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAA--GTCCTCCCCAACACGT 178 * ** * *** * ** ** * *** ***** ** ** consensus_6339#1 TCATCATCATACTACGGA-ACCGAATAGCCATCATCATCATCAT-GCACAGCTGCAC--- 133 consensus_6339#2 TCATCATCATACTACGGA-ACCGAATAGCCATCATCATCATCAT-GCACAGCTGCAC--- 122 consensus_6339#0 TTGGCCCTTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACATA 238 * * **** * ** * * ** * * * * * ***** *** consensus_6339#1 ---CATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCA----CGA 186 consensus_6339#2 ---CATCATCATGCCCATCATCAGCATCATCCCGAGCAGCAGCAGCAGCAGCAG-CACGA 178 consensus_6339#0 CCACATGCTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACAC 298 *** * ** * * * * ** * ** * ** ** ** * consensus_6339#1 AAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGC--AGCACCCGAAGACG 244 consensus_6339#2 AAAGATGGAGGAGCATCATGACGATGAGGAGGTGGTGGTCGAGC--AGCACCCGAAGACG 236 consensus_6339#0 ACAAAAACAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCG 358 * * * * ** * ** ** * * * * * * * ** *** ** consensus_6339#1 ACGACGATGGA-AGATA-AAACTTAACTCCAAAAGCTAC-----TCCAACGGGGTAAGAA 297 consensus_6339#2 ACGACGATGGA-AGATA-AAACTTAACTCCAAAAGCTAC-----TCCAACGGGGTAAGAA 289 consensus_6339#0 ATTGAAATGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAG 418 * *** * * * * * **** ** ** * ** ** ****** ***** consensus_6339#1 GAGGGGTCAGTCGCTGCAACAGCTGCATGCAC-GATACACAAACACACCCCCACACCCAC 356 consensus_6339#2 GAGGGGTCAGTCGCTGCAACAGCTGCATGCAC-GATACACAAACACACCCCCACACCCAC 348 consensus_6339#0 AGAAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATATTTAAGGAT 478 ** * * ** * * ** * * * * * * * * consensus_6339#1 ACCTTAACAAAGA--AATGCTGAGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAA 414 consensus_6339#2 ACCTTAACAAAGA--AATGCTGCGATGCGAAGAGAAAAACGCTTCCACAATTTACCACAA 406 consensus_6339#0 GCTTTAGCAAAGATTAAGCGTTTTTCGTGTGTCTCTCCATACTTGGGGAGCTTACCG-AA 537 * *** ****** ** * * * * *** * ***** ** consensus_6339#1 AACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTT 474 consensus_6339#2 AACGAAACACGCGTCGGAGCAGAAAACAGATAAGTAAACATCAATCCCTTCTTACAACTT 466 consensus_6339#0 AAGGTTATATTTTTACAAAC-----GCACTCCAATTCGTTTCTATTTCGGTTCTAAAATA 592 ** * * * * * * ** * * ** ** * * ** * consensus_6339#1 TATTCCATTTTTCCGCGATACGCTTTCGAGAAGTCAAGTCCTCCCCAACACGTTTGGCCC 534 consensus_6339#2 TATTCCATTTTTCCG--------------------------------------------- 481 consensus_6339#0 TGTTTTTTTTTTTTGCATTACAACGCCGTCGTAATGTATGGGTGAACTGAACAGTTCAAA 652 * ** ***** * consensus_6339#1 TTGGCTACAAACACTAGAAATTTTGCACCCTTTTTAAAGAACAGCACCACTCACCCGGTG 594 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 TTGCCTTGCATTGGTAGCGATCGTTCTATTAAAAAAAAAAAAAACAGGATTTTTGCGGGC 712 consensus_6339#1 CTAATTTCAGTTTTTAACAAAAGCCGAAATTATAGATTAAGACACACATACACACAAAAA 654 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 CACCACCTTTCCACAGCCCTGCGTATGAGGGGGCGGCTTGGTCCCCTTTCTAGATTTGAT 772 consensus_6339#1 CAAGAAAAACAAAACAACAAACCGACGACAACTGTCCCTAAAACACGATCGCGATTGAAA 714 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 CCCATGGCGGGCTTGCTGCAGAGTCGCGTACGTACAGCTCGACGACTGT----------- 821 consensus_6339#1 TGAATATACATAGGATTAAATCAAAGAATTAGGGGAGTCAAACGGGATAAGAGAGAAAAA 774 consensus_6339#2 ------------------------------------------------------------ consensus_6339#0 ------------------------------------------------------------ consensus_6339#1 TAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGAGAGAGAGCGG 820 consensus_6339#2 ---------------------------------------------- consensus_6339#0 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||