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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence
[GCAGAATCGCGCACGAGNGGTTCGCCGATGTTTGAATCGATCGACTGGAACCTGGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCAACGGGAAGAAAGCGCGCCACGAAGCAAAGCCATCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTGACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAATGTAAAGCCGGCCGAAAATCGCAAAAATCCGCAGCAACGCAACGATTTCGCAGTGCCCAAAGCTCCAATGCCAAAGAAGGCGGTTGGCACCAATTCGGCCAATGTGCAGAATGCTGCTGCACGCCCGTTGCGCAAAGTGCCGCCACCAGGGGACGCCGAAAAAGTCCCCAGCAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGGCCTGCTTTGGTCCAAATACAGGCAAGGTCCAAGGCAGGGCAATCGCTCCTTACAAGCAAANCCTTTCNTGGCAGAGNCGGTCCCGGTGGGAAACCAGGTAAAACGGGGATTNGTCGGTTCCCCCAAAGCAGGCGAANTCCAAGCCGGAAAGNGTCCGCAGAAAACAGGGGANCCCAGGGAATTAATTGGGGGGGCTGCCANAGAGCCAGGGCCACATGTGTTGGAGAGCAACAGNANGAGANACCTCTAAAGAGAAAGGCA]
[+] EMBL BX468248 [GCAGAATCGCGCACGAGNGGTTCGCCGATGTTTGAATCGATCGACTGGAACCTGGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCAACGGGAAGAAAGCGCGCCACGAAGCAAAGCCATCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTGACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAATGTAAAGCCGGCCGAAAATCGCAAAAATCCGCAGCAACGCAACGATTTCGCAGTGCCCAAAGCTCCAATGCCAAAGAAGGCGGTTGGCACCAATTCGGCCAATGTGCAGAATGCTGCTGCACGCCCGTTGCGCAAAGTGCCGCCACCAGGGGACGCCGAAAAAGTCCCCAGCAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGGCCTGCTTTGGTCCAAATACAGGCAAGGTCCAAGGCAGGGCAATCGCTCCTTACAAGCAAANCCTTTCNTGGCAGAGNCGGTCCCGGTGGGAAACCAGGTAAAACGGGGATTNGTCGGTTCCCCCAAAGCAGGCGAANTCCAAGCCGGAAAGNGTCCGCAGAAAACAGGGGANCCCAGGGAATTAATTGGGGGGGCTGCCANAGAGCCAGGGCCACATGTGTTGGAGAGCAACAGNANGAGANACCTCTAAAGAGAAAGGCA]
consensusID : consensus_6341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 891 fasta sequence
[AAAAAGTCCCCACAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGCCTGCTTTGGTCCAAATACAGCAGTCCAGCAGCCATCGCTCTTCAAGCAACCCTTCTGCCAGAGCGTCCGGTGGAAACAGTAAGGGTGGTGGTTCCAACAGCAATCAACCGAACTCAAAAAAGGAACCAGAATATGGCGCTCAAGAGCAGCCACGTGTGGAGCAAGAGAAACCTCAACAAGCCACAGCGCAACAGAAACAGCAACCGCAACAGCAACAATCAAACAGAAACAACAAACCGACAGTGTCGAACACTGCCAAGTCGTCTACCCGTGAGCCGGCGGTGAAGGAGAGCGACCCGGAACCGATGGAGCTGGACGCGGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGCGATGCAAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAATCTGGGTGATGATGCTGCTGCCGATGAAGCGGACGATCTGGACTTATTGTGTGCCGGACCGGCTAAACAGACGCGCAGCAAATCGCAGAAGAGGAAAAAATCGGTCGATAGTAGTAATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGGACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTT-AATGTTGCTAATTGAATTGAATTCTATTTATTTGCCTATCCCGCCCAACCAAACGTTGGGGGAAAGAGCGTAAAATCATTTCTTTCCATTGTTCGGTTTCGGTTTCACGACCTCGCTTTGAAGTTTAAATATACGCAACAGTATATTACAGATTAAAAAAAA]
[+] EMBL AGA282091 [AAAAAGTCCCCACAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCACTCACGCCTGCTTTGGTCCAAATACAGCAGTCCAGCAGCCATCGCTCTTCAAGCAACCCTTCTGCCAGAGCGTCCGGTGGAAACAGTAAGGGTGGTGGTTCCAACAGCAATCAACCGAACTCAAAAAAGGAACCAGAATATGGCGCTCAAGAGCAGCCACGTGTGGAGCAAGAGAAACCTCAACAAGCCACAGCGCAACAGAAACAGCAACCGCAACAGCAACAATCAAACAGAAACAACAAACCGACAGTGTCGAACACTGCCAAGTCGTCTACCCGTGAGCCGGCGGTGAAGGAGAGCGACCCGGAACCGATGGAGCTGGACGCGGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGA ]
[-] EMBL CNS093EU [ GAAACCTCAACAAACCACAGCGCAACAGAAACAGAAACCGCAAAAACAAAAATCAAACAGAAACAACAAACCGACAGTATCGAACACTGCCAAGTCGTCTACCCGTGAGCCGGCGGTGAAGGAGAGCGACCCGGAACCGATGGAGCTGGACGCGGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGCGATGCAAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAATCTGGGTGATGATGCTGCTGCCGATGAAGCGGACGATCTGGACTTATTGTGTGCCGGACCGGCTAAACAGACGCGCAGCAAATCGCAGAAGAGGAAAAAATCGGTCGATAGTAGTAATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGGACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTT AATGTTGCTAATTGAATTGAATTCTATTTATTTGCCTATCCCGCCCAACCAAACGTTGGGGGAAAGAGCGTAAAATCATTTCTTTCCATTGTTCGGTTTCGGTTTCACGACCTCGCTTTGAAGTTTAAATATACGCAACAGTATATTACAGATT ]
[-] EMBL AGA280390 [ GGAGGACGACTGCAACATCGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGTGATGCAAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAATCTGGGTGATGATGCTGCTGCCGATGAAGCGGACGATCTGGACTTTTTGTGTGCCGGCCCGGCTAAACAGACGCGCAGCAAATCGCAGAAGAGGAAAAAATCGGTCGATAGTAGTAATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGGACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTTAAATGCTGCTAATTGAATTGAATTCTATTTATTTGCCTATCCCGCCCAACCAAACGTTGGGGGATAGAGCGTAAAATCATTTCTTTCCATTGTTCGGTTTCGGTTTCACGACCTCGCTTTGAAGTTAAAATATACGCAACAGTATATTACAGATTAAAAAAAA]
consensusID : consensus_6341#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence
[GGAAAAGATTCTCGCCGACTTCTTGTCGAACAATTCATCGTCCTCCTCGCACGATGCGTCGTTCAACGACCTCGAACAGTTGGCCGAGCTGCACAAACAGATAGAGCTGAAGAAAGTGCACCGGGACGATTTGCGTCGTTTGAATTTCGGACTGTTCTCGCTCAAGCAGGGACTGGCGAGCTTTGGCAGTGGAGCGTTCGAGGAACAGCTTTCCATCGATCACCACACCATCGTCCGGCAGGTGGTGGAGAAGTACCGGGAGGCATCGTACGGTTTGCAGCGTTATTGCGGCGAGCAGACACTGCTCGGCCACTCGCGGCAGGCTCTGCTCGATCAGGGCGAGTTGCAGAAGCTGCAGAGTGTGCTGCGGCTGCAGGACCAGCTGCGCGTGAAGCTCGCCAGCACGCCGATCGTGAAGCAGTGGGACCGGGAGAAGGCCACCCTGTGCGCGGAACAGAAGGAGCTGGCCAAGCTGGAGCAGGTCAGCAATGAGATTACGCACAAGCGTAAAGACATGCTCGACCGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCTACGGGAAGAAAGCGCGCCACGAAGCAAAGCCACCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTTACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAA]
[+] EMBL CNS093ET [GGAAAAGATTCTCGCCGACTTCTTGTCGAACAATTCATCGTCCTCCTCGCACGATGCGTCGTTCAACGACCTCGAACAGTTGGCCGAGCTGCACAAACAGATAGAGCTGAAGAAAGTGCACCGGGACGATTTGCGTCGTTTGAATTTCGGACTGTTCTCGCTCAAGCAGGGACTGGCGAGCTTTGGCAGTGGAGCGTTCGAGGAACAGCTTTCCATCGATCACCACACCATCGTCCGGCAGGTGGTGGAGAAGTACCGGGAGGCATCGTACGGTTTGCAGCGTTATTGCGGCGAGCAGACACTGCTCGGCCACTCGCGGCAGGCTCTGCTCGATCAGGGCGAGTTGCAGAAGCTGCAGAGTGTGCTGCGGCTGCAGGACCAGCTGCGCGTGAAGCTCGCCAGCACGCCGATCGTGAAGCAGTGGGACCGGGAGAAGGCCACCCTGTGCGCGGAACAGAAGGAGCTGGCCAAGCTGGAGCAGGTCAGCAATGAGATTACGCACAAGCGTAAAGACATGCTCGACCGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACATCCTGGCGCACCTCAGCACCATCCATTCCGGCAAGTATCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCTACGGGAAGAAAGCGCGCCACGAAGCAAAGCCACCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCCGGAACAAACTTACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATGGCGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGCGCAACGGGAACGACACGGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6341#0 -GCAGAATCGCGCACGAGNGGTTCGCCGATGTTTGAATCGATCGACTGGAACCTGGAAAG 59
consensus_6341#2 GGAAAAGATTCTCGCCGACTTCTTGTCGAACAATTCATCGTCCTCCTCGCACGATGCGTC 60
consensus_6341#1 AAAAAGTCCCCACAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAA- 59
* * * * * ** * *
consensus_6341#0 CGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAGAATCCGAACGATTTCCCCGACAT 119
consensus_6341#2 GTTCAACGACCTCGAACAGTTGG--CCGAGCTGCACAAA-CAGATAGAGCTGAAGAAAGT 117
consensus_6341#1 ----AGCACTCACGCCTGCTTTGGTCCAAA-TACAGCAGTCCAGCAG---CCATCGCTCT 111
* * * ** * * * * ** * * * *
consensus_6341#0 CCTGGCGCACC-TCAGCACCATCC--ATTCCGGCAAGTATCAGCT---GCAGGATGTAGC 173
consensus_6341#2 GCACCGGGACGATTTGCGTCGTTTGAATTTCGGACTGTTCTCGCTCAAGCAGGGACTGGC 177
consensus_6341#1 TCAAGCAACCCTTCTGCCAGAGCG----TCCGGTG-GAAACAGTA-----AGGGTGGTGG 161
* * * ** * *** * * *** *
consensus_6341#0 CCACTCCGTCGTTGACAAGGGCAACGGGAAGAAAGCGCGCCACGAAGCA--AAGCCATCA 231
consensus_6341#2 GAGCTTTGGCAGTG----GAGCGTTCGAGGAACAGCTTTCCATCGATCACCACACCATCG 233
consensus_6341#1 TTCCAACAGCAATCAACCGAACTCAAAAAAGGAACCAGAATATGGCGCTCAAGAGCAGCC 221
* * * * * * * * * * ** *
consensus_6341#0 AAGGGTGCGATGAGAAAGGGTGGCA-AAGCAGCACCGGGTGAGGTTAAGTCATCGCTCCC 290
consensus_6341#2 TCCGGCAGGTGGTGGAGAAGTACCG-GGA-GGCATCG--TACGGTTTG--CAGCGTTATT 287
consensus_6341#1 ACGTGTGGAGCAAGAGAAACCTCAACAAGCCACAGCGCAACAGAAACAGCAACCGCAACA 281
* * ** ** * * **
consensus_6341#0 GGAACAAACTGACAGAGAAGCTGCTGCTACGGTCGCAAAGAAATCCAAAATG-------G 343
consensus_6341#2 GCGGCGAGCAGACACTGCT-CGGCCACTCGCGGCAGGCTCTGCTCGATCAGG-------G 339
consensus_6341#1 GCAACAATCAAACAGAAACAACAAACCGACAGTGTCGAACACTGCCAAGTCGTCTACCCG 341
* * * * *** * * * * * *
consensus_6341#0 CGGACTGTCGCGAAAAGGTTACTACGCCACAAGTGGAAGAGC-GCAACGGGAACGACACG 402
consensus_6341#2 CGAGTTGCAG-AAGCTGCAGAGTGTGCTGCGGCTGCAGGACCAGCTGCGCGTGAAGCTCG 398
consensus_6341#1 TGAGCCGGCG-GTGAAGGAGAGCGACCCGGAACCGATGGAGCTG-GACGCGGAGGACGAC 399
* * * * * * * ** * * ** * *
consensus_6341#0 GAAAATGTAAAGCCGGCCGAAAATCGCAAAAATCCGCAGCAACGCAACG-ATTTCGCAGT 461
consensus_6341#2 CCAGC----ACGCCGATCGTGAAGCAGTGGGACCGGGAGAAGGCCACCC-TGTGCGCGGA 453
consensus_6341#1 TGCAACAT-CGGCGAGATGATGGACACTTCGGCGAGCAACAATTCCCTGGACTTTGCGAT 458
** * * * * * * * **
consensus_6341#0 GCCCAAAGCTCCAATGCCAAAG--AAGGCGG---TTGGCACCAA--TTCGGCCAATGTG- 513
consensus_6341#2 ACAGAAGGAGCTGGCCAAGCTG--GAGCAGG---TCAGCAATGAGATTACGCACAAGCG- 507
consensus_6341#1 GC--AAAGTTCGAGCGGTGAGTTTGATCTGAACTTTTCCGGCGACCTTCCCGACATGAAT 516
* ** * * * * * * * ** * *
consensus_6341#0 CAGAATGCTGCTGC-ACGCCCGTTGC--GCAAAGTGCCGCCACCAGGGG-ACGCCGAAAA 569
consensus_6341#2 TAAAGACATGCTCG-ACCGAAAGCGCCAGCATGGACTTGAAGTTGGATCTGAACTTCAAG 566
consensus_6341#1 CTGGGTGATGATGCTGCTGCCGATGA-AGCGGACGATCTGGACTTATTGTGTGCCGGACC 575
** * * * ** * *
consensus_6341#0 AGTCCCCAGCAGAAGCGGGTCACGATGGCCGGAACCGGTCGTAAGGAGTGCAAAAAAGCA 629
consensus_6341#2 AATCCGAACGATTTCCCCGACATCCTGGC-GCACCTCAGCACCATCCATTCCGGCAAGTA 625
consensus_6341#1 GG--CTAAACAGACGCGCAGCA-AATCGC-AGAAGAGGAAAAAATCGGTCGATAGTAGTA 631
* * * * ** * ** * * * ** *
consensus_6341#0 CTCACGGCCTGCTTTGGTCCA----AATACAGGCAAGGTCCAAGGCAGGGCAATCGCTCC 685
consensus_6341#2 TCAGCTGCAGGATGTAGCCCACTCCGTCGTTGACAAGGGCTACGGGAAGA-AAGCGCGCC 684
consensus_6341#1 ATGACGTAGCGGACAGCTTTGACTTTGCGTTCGACGGCAGCAACTCCAGCGAATGTTTGG 691
* * * * * **
consensus_6341#0 TTACAAGCAAANCCTTTCNTGGCAGAGNCG-GTCCCGGTGGGAAACCAG-GTAAAACGGG 743
consensus_6341#2 ACG-AAGCAAAGCCACCAAAGGGTGCGATGAGAAAGGGTGGCAAAGCAGCACCGGGTGAG 743
consensus_6341#1 ACGGTGGGGACGATTTGTTTAGTTGAGCTACTTTTTTTAATGTTGCTAA--TTGAATTGA 749
* * * * * *
consensus_6341#0 GATTNGTCGGTTCCCCCAAAGCAGGCGAANTCCAAGCCGGAAAGNGTCCGCAGAAAACAG 803
consensus_6341#2 GTTAAGTCATCGCTCCCGGAACA----AACTTACAGAGAAGCTGCTGCTACGGTCGCAAA 799
consensus_6341#1 ATTCTATTTATTTGCCTATCCCG--CCCAACCAAACGTTGGGGGAAAGAGCGTAAAATCA 807
* * ** * * * * *
consensus_6341#0 GGGANCCCAGGGAATTAATTGGGGGGGCTGCCANAGAGCCAGGGCCACATGTGTTGGAGA 863
consensus_6341#2 GAAATCCAAAATGGCGGACTG------TCGCGAAAAGGTTACTACGCCACAAGTGGAAGA 853
consensus_6341#1 TTTCTTTCCATTGTTCGGTTTCGG----TTTCACGACCTCGCTTTGAAGTTTAAATATAC 863
* *
consensus_6341#0 GCAACAGNANGAGANACCTCTAAAGAGAAAGGCA 897
consensus_6341#2 GCG-CAACGGGAACGACACGGAAAA--------- 877
consensus_6341#1 GCAACAGTATATTACAGATTAAAAAAAA------ 891
** ** * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||