Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6342 cluster # 6342       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6342#0 length = 1258 sequences # 4  
consensus_6342#1 length = 667 sequences # 1  

consensusID : consensus_6342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1258
fasta sequence
                              [CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCGTCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCGATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCTCCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACTATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCGGACTGTCGGCATACCCAAGGAAACT]

[+] EMBL BM597014             [CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCGTCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM630124             [        ccgGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAGGCGCAAAAGAAGCGTCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM624502             [                                                                                                                                                                                                                                                                                                                                                                                                           ccgAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCT                                                                                                                                                                                                                                                   ]
[+] EMBL BM631012             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCGATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCTCCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACTATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCGGACTGTCGGCATACCCAAGGAAACT]


>consensus_6342#0 CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAG TTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACC TCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCG TGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGGGTGCTACGGCGACCG GTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGC TCGCGTCCGCCGGTGTGACTGCTGGGACGCGCGTCTCCGAACCGAAGGAGGTGCTCAGCA AGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATCGGAGGTGGCG GTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTC CCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGC GTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAAATCACGCAATGGGCAA TCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATT GGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGG AGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAAC CGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGC AGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGG TGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGA TGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCTGAAGA CCGCTAACGCACAGGACGAGAAGAAGCAGATCGATCTCATTACGGAGCTGCTGATTGGTT CGATGCGTGATGTGGTGTACCCAGTTGACTTCTCCATCTACTCCACCTGTCCGCGAATAA TGGGCGAAGAGTCGGAGGAAGTCACCTCGGACTATGGCTACGGTGGTTACAGTGATGGAT ATCGTGGCTATCAGGATGATGCGTACGGTACCGGACTGTCGGCATACCCAAGGAAACT



consensusID : consensus_6342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence
                              [CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAAAAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAACGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCACTGATCCG]

[+] EMBL BM649069             [CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAAAAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAACGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCACTGATCCG]


>consensus_6342#1 CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGT TTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAAA AACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAAC GATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGC GCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGT ACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCAC CGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGT CTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGG AGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGG AGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAG TCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCAC TGATCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6342#0      CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAG 60
consensus_6342#1      -CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAG 59
                       * *********************************************************

consensus_6342#0      TTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGG------------ 108
consensus_6342#1      TTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAA 119
                      ************************************************            

consensus_6342#0      ------------------------------------------------------------
consensus_6342#1      AAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAA 179
                                                                                  

consensus_6342#0      ---------------GAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCG 153
consensus_6342#1      CGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCG 239
                                     *********************************************

consensus_6342#0      CGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACG 213
consensus_6342#1      CGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACG 299
                      ************************************************************

consensus_6342#0      TACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCA 273
consensus_6342#1      TACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCA 359
                      *********** ************************************************

consensus_6342#0      CCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCG 333
consensus_6342#1      CCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCG 419
                      ****************************** ************************ ****

consensus_6342#0      TCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATG 393
consensus_6342#1      TCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATG 479
                      ******************* ****************************************

consensus_6342#0      GAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTG 453
consensus_6342#1      GAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTG 539
                      **************** ** ****************************************

consensus_6342#0      GAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGA 513
consensus_6342#1      GAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGA 599
                      ****************************** *****************************

consensus_6342#0      GTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCA 573
consensus_6342#1      GTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCA 659
                      ******* ***** ******************* ************* ************

consensus_6342#0      CTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGG 633
consensus_6342#1      CTGATCCG---------------------------------------------------- 667
                      ********                                                    

consensus_6342#0      TGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGC 693
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      ACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCC 753
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      CCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGT 813
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      TCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGA 873
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      CGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCG 933
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      TGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCC 993
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      ATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCG 1053
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      ATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCT 1113
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      CCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACT 1173
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      ATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCG 1233
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      GACTGTCGGCATACCCAAGGAAACT 1258
consensus_6342#1      -------------------------
                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)