These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 983 fasta sequence [CCGCAGAGCAGCAAAACGCTAGCAAAATTTACGTAGAGAGTGGAAAAGGATTAAAACTTGTGAGTTTGGCCAGCTTGTTCGTGTCCAGTTTCGTGTCCCATCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCGGAAAGATTAACCACCCTGATGGCCCGCCCCGGCCAGGACAATGTGCCGCGGGACGATGTGCCGTGGCATCTGAAGTACGGTGGACGGGCGGCGGGAATCGTCGGTGGATTCTTTGCCATCCTGTTCGGGCTGTACAACTGCATCGGCATACTGCTCGGTGACGTTGGGTGCCTGGTCGGCGGCATCCTGCAGATACTGGCCGGGTTCGTGGTGCTGGCGATAGAGGCACCGTGTTGCTTTATCTTCATCGACTATGTGCAGCAGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATCCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAAGGATCGCGCGAGGATATGGCAGCGATGGCTTCCCCGAACGCGATGTCCCCGGTGCAGGGCGTCCCGTCAACGGACCAACACTCCACCCTGATGGAGGATCCCGATGTATGGCGTCCAACATAAATCGTTCACTAAATATCAAACCCTCCAAAACCAAAAAACAACCTACCATAAACCCATTAAGCTTCTTAACAATTTTCGCTGCTCCTTCATCATGCAAAAGCAAAAACAAGCATTTAAAAATACAAAAAACACACACACCAACACACAAACGTTTTGCTCACGGGATA] [+] EMBL BM641522 [CCGCAGAGCAGCAAAACGCTAGCAAAATTTACGTAGAGAGTGGAAAAGGATTAAAACTTGTGAGTTTGGCCAGCTTGTTCGTGTCCAGTTTCGTGTCCCATCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCGGAAAGATTAACCACCCTGATGGCCCGCCCCGGCCAGGACAATGTGCCGCGGGACGATGTGCCGTGGCATCTGAAGTACGGTGGACGGGCGGCGGGAATCGTCGGTGGATTCTTTGCCATCCTGTTCGGGCTGTACAACTGCATCGGCATACTGCTCGGTGACGTTGGGTGCCTGGTCGGCGGCATCCTGCAGATACTGGCCGGGTTCGTGGTGCTGGCGATAGAGGCACCGTGTTGCTTTATCTTCATCGACTATGTGCAGCAGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATTCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATT ] [+] EMBL BM638948 [ ccgCAGCTTGTTCGTGTCCAGTTTCGTGTCCCGTCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCAATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCGGAAAGATTAACCACCCTGATGGCCCGCCCCGGCCAGGACAATGTGCCGCGGGACGATGTGCCGTGGCATCTGAAGTACGGTGGACGGGCGGCGGGTATCGTCGGTGGATTCTTTGCCATCCTGTTCGGGCTGTACAACTGCATCGGCATACTGCTTGGTGACGTTGGCTGCCTGGTCGGTGGCATCCTGCAGATACTGGCCGGGTTCGTGGTACTGGCGATAGAGGCACCGTGTTGCTTTATCTTCATCGATTATGTGCAGCAGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATCCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAAGGATCGCGCGAGGATATGGCAGCGATGGCTTCCC ] [+] EMBL BM645322 [ ccGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATCCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAAGGATCGCGCGAGGATATGGCAGCGATGGCTTCCCCGAACGCGATGTCCCCGGTGCAGGGCGTCCCGTCAACGGACCAACACTCCACCCTGATGGAGGATCCCGATGTATGGCGTCCAACATAAATCGTTCACTAAATATCAAACCCTCCAAAACCAAAAAACAACCTACCATAAACCCATTAAGCTTCTTAACAATTTTCGCTGCTCCTTCATCATGCAAAAGCAAAAACAAGCATTTAAAAATACAAAAAACACACACACCAACACACAAACGTTTTGCTCACGGGATA] consensusID : consensus_6344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [CCGCGGTTAACTTGTTCGTGTCTAGTTTCNCGTCCGTCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGACACCGGGAAAGTAAAGCGCAGCAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCTGGAAAGATTAACCACCCTGATGGCCGCCCGGCAGGACAATGTGCCGCGGGACTGATGTGCCGTGGCATCTGAAGTACGGTGGACTGGGCGGCGGGAATCGTCGGTGGATTCTTTGNCATCCTTGTTCGGGCTGTACAACTGCATCGGCATACTTGCTCGGTGATGTNNGGGTGACTGGTCGGGCGGCATCCTGCAGATACTGGCCGNGGTTCGTTGGTGCTGGCGATTNAGAGGCACCGTGTAGCTNTTATCTTCATCGAATATAGTAGCAGCAGGCGGCATGAGCAANGCCGACCAGGCTGGCCGTTACTGGGAACCGGGCGCGCTCTACTGCATTATCTCCATCCCGCGGTTGATNTCTGTGCCTGNGCTTGGAGCCAGCCTGTNCGGCTGTGGGCTTATATTCGTANCGGCAATGCTGTACGGTATGATGGGACTCGGAAAAAAAGGATCGCGCGAACGATATGGCAGCGATGGATTCCCCGAACGCGATGTCCCCGGGTGNAAGCGTCCGTCAAGGGACCAAGAATTCAACCCTGNATNGAGGACCCGANNAGTACGGCGGTACAGCATAAATCGTCACTAATATAAACCTCCA] [+] EMBL AL692551 [CCGCGGTTAACTTGTTCGTGTCTAGTTTCNCGTCCGTCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGACACCGGGAAAGTAAAGCGCAGCAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCTGGAAAGATTAACCACCCTGATGGCCGCCCGGCAGGACAATGTGCCGCGGGACTGATGTGCCGTGGCATCTGAAGTACGGTGGACTGGGCGGCGGGAATCGTCGGTGGATTCTTTGNCATCCTTGTTCGGGCTGTACAACTGCATCGGCATACTTGCTCGGTGATGTNNGGGTGACTGGTCGGGCGGCATCCTGCAGATACTGGCCGNGGTTCGTTGGTGCTGGCGATTNAGAGGCACCGTGTAGCTNTTATCTTCATCGAATATAGTAGCAGCAGGCGGCATGAGCAANGCCGACCAGGCTGGCCGTTACTGGGAACCGGGCGCGCTCTACTGCATTATCTCCATCCCGCGGTTGATNTCTGTGCCTGNGCTTGGAGCCAGCCTGTNCGGCTGTGGGCTTATATTCGTANCGGCAATGCTGTACGGTATGATGGGACTCGGAAAAAAAGGATCGCGCGAACGATATGGCAGCGATGGATTCCCCGAACGCGATGTCCCCGGGTGNAAGCGTCCGTCAAGGGACCAAGAATTCAACCCTGNATNGAGGACCCGANNAGTACGGCGGTACAGCATAAATCGTCACTAATATAAACCTCCA] consensusID : consensus_6344#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [GAGGTTTAAAGTGGAAAAGGATTTAAACTTGTGAGTTTGGGCAGCTTGTTCGGTGGTCAGTTTCGTGGTCCGGTCGAGAATACCTGCGCACGGGTACGAATCGTGAATCGTGGCTCGAAAGCAATTGCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCAAGGCCCGTAAAAGAAAGCAATAGCCCAATGTCGATTCGCAGAACAGATTGATCCACTGGGATGGGACTCGGCCCCGGCTCAAGTGAACAANTGGTGCGCGCCGGGGACGAATGTGCCGGTGGGACTTATGTANGTACGGGTGTGAT] [+] EMBL AL933601 [GAGGTTTAAAGTGGAAAAGGATTTAAACTTGTGAGTTTGGGCAGCTTGTTCGGTGGTCAGTTTCGTGGTCCGGTCGAGAATACCTGCGCACGGGTACGAATCGTGAATCGTGGCTCGAAAGCAATTGCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCAAGGCCCGTAAAAGAAAGCAATAGCCCAATGTCGATTCGCAGAACAGATTGATCCACTGGGATGGGACTCGGCCCCGGCTCAAGTGAACAANTGGTGCGCGCCGGGGACGAATGTGCCGGTGGGACTTATGTANGTACGGGTGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6344#0 CCGCAGAGCAGCAAAACGCTAGCAAAATTTACGTAGAGAGTGGAAAAGGATTAAAACTTG 60 consensus_6344#1 ------------------------------------------------------------ consensus_6344#2 -----------------------------GAGGTTTAAAGTGGAAAAGGATTTAAACTTG 31 consensus_6344#0 TGAGTTTGGCCAGCTTGTTCG-TGTCCAGTTTCGTG-TCCCATCGAGAATACCTGCGCAC 118 consensus_6344#1 ---CCGCGGTTAACTTGTTCG-TGTCTAGTTTCNCG-TCC-GTCGAGAATACCTGCGCAC 54 consensus_6344#2 TGAGTTTGGGCAGCTTGTTCGGTGGTCAGTTTCGTGGTCCGGTCGAGAATACCTGCGCAC 91 ** * ******** ** ****** * *** ****************** consensus_6344#0 GG-TACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAG 177 consensus_6344#1 GG-TACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAG 113 consensus_6344#2 GGGTACGAATCGTGAATC-GTGGCTCGAAAGCAATTGC-AGCAACTAGCAAAAAGAAAAG 149 ** *************** ************* ***** ********************* consensus_6344#0 GTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAA 237 consensus_6344#1 GTTATCTACTTTCACCCTCGG-ACACCGGGAAAGTAAAGCGCAGCA--GCGCCCGCAAAA 170 consensus_6344#2 GTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCA--AGGCCCGTAAAA 207 ********************* ************************ ***** **** consensus_6344#0 GAAAGCAATAGCAAAATGTCG-TTCGC-GGAAAGATTAA-CCACCCTGATGGCCCGCCCC 294 consensus_6344#1 GAAAGCAATAGCAAAATGTCG-TTCGCTGGAAAGATTAA-CCACCCTGATGGCC--GCCC 226 consensus_6344#2 GAAAGCAATAGCCCAATGTCGATTCGCAGAACAGATTGATCCACTGGGATGGG---ACTC 264 ************ ******* ***** * * ***** * **** ***** * * consensus_6344#0 GGCCAGGACAATGTGCCGCGGGAC-GATGTGCCGTGGCATCTGAAGTACGGTGGAC-GGG 352 consensus_6344#1 GGC-AGGACAATGTGCCGCGGGACTGATGTGCCGTGGCATCTGAAGTACGGTGGACTGGG 285 consensus_6344#2 GGCCCCGGC--TCAAGTGAACAANTGGTGCGCGCCGGGGACGAATGTGCCGGTG---GGA 319 *** * * * * * * ** ** ** * * ** * * * ** consensus_6344#0 CGGCGGGAATCGTCGGTGGATTCTTTGCCATCCT-GTTCGGGCTGTACAACTGCATCGGC 411 consensus_6344#1 CGGCGGGAATCGTCGGTGGATTCTTTGNCATCCTTGTTCGGGCTGTACAACTGCATCGGC 345 consensus_6344#2 CTTATGTANGTACGGGTGTGAT-------------------------------------- 341 * * * **** * consensus_6344#0 ATACT-GCTCGGTGACGTTGGG-TGCCTGGTCGG-CGGCATCCTGCAGATACTGGCCGGG 468 consensus_6344#1 ATACTTGCTCGGTGATGTNNGGGTGACTGGTCGGGCGGCATCCTGCAGATACTGGCCGNG 405 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 -TTCGT-GGTGCTGGCGAT--AGAGGCACCGTGTTGCTTT-ATCTTCATCGACTATGT-- 521 consensus_6344#1 GTTCGTTGGTGCTGGCGATTNAGAGGCACCGTGTAGCTNTTATCTTCATCGAATATAGTA 465 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 GCAGCAGGCGGCA-GAG-AAGGCCGACCAG--CGGCCGT-ACTGGAACCGGGCCGCGCTC 576 consensus_6344#1 GCAGCAGGCGGCATGAGCAANGCCGACCAGGCTGGCCGTTACTGGGAACCGGGCGCGCTC 525 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 TACTGCATTATCTCCATCCCGCCGGTGATC-CTGTGCCTGGGCTTGGG--CAGCCTGTTC 633 consensus_6344#1 TACTGCATTATCTCCATCCCGCGGTTGATNTCTGTGCCTGNGCTTGGAGCCAGCCTGTNC 585 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 GGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAA 693 consensus_6344#1 GGCTGTGGGCTTATATTCGTANCGGCAATGCTGTACGGTATGATGGGACTCGGAAAAAAA 645 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 GGATCGCGCGAG-GATATGGCAGCGATGGCTTCCCCGAACGCGATGTCCCCGGTGCAGGG 752 consensus_6344#1 GGATCGCGCGAACGATATGGCAGCGATGGATTCCCCGAACGCGATGTCCCCGGGTGNAAG 705 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 CGTCCCGTCAACGGACCAACACTCCACCCT--GATGGAGGATCCCGAT-GTATGGCG-TC 808 consensus_6344#1 CGTCC-GTCAAGGGACCAAGAATTCAACCCTGNATNGAGGACCCGANNAGTACGGCGGTA 764 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 CAACATAAATCGTTCACTAAATATCAAACCCTCCAAAACCAAAAAACAACCTACCATAAA 868 consensus_6344#1 CAGCATAAATCGT-CACTAA-TAT--AAACCTCCA------------------------- 795 consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 CCCATTAAGCTTCTTAACAATTTTCGCTGCTCCTTCATCATGCAAAAGCAAAAACAAGCA 928 consensus_6344#1 ------------------------------------------------------------ consensus_6344#2 ------------------------------------------------------------ consensus_6344#0 TTTAAAAATACAAAAAACACACACACCAACACACAAACGTTTTGCTCACGGGATA 983 consensus_6344#1 ------------------------------------------------------- consensus_6344#2 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||