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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 980 fasta sequence
[TTTTTTTTAACGAATGGTTTGTTTATTGATACATGGTTGTATTTGAAGCGTTTTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTAGTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATGTTTTAACGTGCTCGCGGGCAGGCTTGCTTGAATGGCATCTTTAACGTAAGCGATTGGAATAAAATCAACTTGTTTTACAATTGGGTGATGCTTCACACTTACGTACTACAATTAAAACATTGCAAAGAGCACGAAGTCATGGTAGGGGATAAAATAAAGGCGAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGATGAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGA--AAGGTGCCCGCATATTGAATTATCCTCTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACGGTGGCCTTTAGCA-CATTACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACTCTCAAAATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTCAGTCCGACAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGCAGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCTTCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCCGGTACGGGTTCCGGGTCGGCCGCTCCGCGCTGTTCGCATTCGTTCAGCATGTTGGCGAACTCCAGGCTGTCCGATTTCAGTATACACCGTCAGCTGGTTCAAACCGTCCAGCTCCGAGGCTTCCAC]
[+] EMBL AGA280394 [TTTTTTTTAACGAATGGTTTGTTTATTGATACATGGTTGTATTTGAAGCGTTTTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTACTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATTTTTTAACGTGCTCGC CGAAGGCTTGCTTAAATGGCATCTTTAGCGTAAGCGATTGGAATAAAATCAACTTGTTTTACAATTGGGTGATGCTTCACACTTACGTACTACAATTAAAACATTGCAAAGAGCACGAAGTCATGGTAGGGGATAAAATAAAGGCGAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTG ]
[+] EMBL CNS09EQL [ CAACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTAGTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATGTTTTAACGTGCTCGCGGGCAGGCTTGCTTGAATGGCATCTTTAACGTAAGCGATTGGAATAAAATCAACTTGTTTTACA ]
[+] EMBL CNS09R1J [ AACGGTGCGCGTCGTCACGTTTTGGAAGCATTTTTGCTTGCGTCAGTAGTACTGCTATCCAGTGCTGAATATGTATTCCTTACAGCTTTAACTGTATGTTTTAACGTGCTCGCGGGCAGGCTTGCTTGAATGGCATCTTTAACGTAAGCGATTGGAATAAAATCAACTTGTTTTACACCTGTGTGATGCTTCACACTTACGTACTACAACTACAACATTGCAAAACGCACGGAGTCATGGTAGGGGATAAAATAAAGGCGAGTTAACCTCCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGATGAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGA AAGGTGCCCGCATATTGAATTATCCTCTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACGGTGGCCTTTAGCA CATTACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACTCTCAAAATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTCAGTCCGACAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGCAGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCTTCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCCGGTACGGGTTCCGGGTCGGCCGC ]
[-] EMBL BX614328 [ AAATAAAGGCGAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGATGAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGAAGAAGGTG CCGCATATTGAATTATCCTCTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACGGTGGCCTTTAGCATCA TACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACTCTCAACATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTTAGTCCGGCAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGCAGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCTTCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCTGGTACGGGTT CGGGTCGGCCGCTCCGCGCTGTTCGCATTCGTTCAGCATGTTGGCGAACTCCAGGCTGTCCGATTTCAGTATACACCGTCAGCTGGTTCAAACCGTCCAGCTCCGAGGCTTCCAC]
consensusID : consensus_6346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence
[GCAGAATCGCCCCGAGGTTTATTTTTTTGTATATAGATAAATGGTTGTATTTGAAGCGTATTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTACGTCACGTATTGGAAGCATATATTGCTATGCGTCACTAGTACTAGGTATACCAGTGCTGAATATGTATTCCTCACAGGNTTTAAACGGTATATTTTCTTACGTGCTCGCCGAAGGCTTGCTTAAATGGGCNTCTATTANCGGTAAGCGATTGGGGAATAAACATCACAACTTGGTTTTACAATTGGTTGTGANTNGCTTTCACACTTTACGGTTACTTAACAACTACCACNNTTGGCCAACGCAGCNNCGAAGTCCCTGGCTACGNGGGANTACAGAATAACAGGGCGAAGTTTAAACACCAAGTGNGTNAACTGTACCTCCCTAATACCGGCCGGAGTNCCCATGACAACGGCTTAGTTTTACNGNGTGGANTNGTNAACACCAGTGGGGGTTCNCGGCGGTAAACGCCGGNGATCCGGCGTTTNGNGGCACTGTCAACGTGNGTNGTCCCGCCACTTATTTTGGGGCCTTTAGTTCCCCTCTCTNNNACTCCGNCGCTCGGGNGACNCGTTCTTCNCTNGGGTTGCGTTGGNTTGGGTGTTTCTCCCTTTTTGTCNTTTTCCCNTTCGCTGGGTGCTTGGCCTGGTGGTCCTTTCGCGNGTGGGNNCCNTTTTNTCGGTGCTCCTTTTATG]
[+] EMBL AL931833 [GCAGAATCGCCCCGAGGTTTATTTTTTTGTATATAGATAAATGGTTGTATTTGAAGCGTATTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAATAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTACGTCACGTATTGGAAGCATATATTGCTATGCGTCACTAGTACTAGGTATACCAGTGCTGAATATGTATTCCTCACAGGNTTTAAACGGTATATTTTCTTACGTGCTCGCCGAAGGCTTGCTTAAATGGGCNTCTATTANCGGTAAGCGATTGGGGAATAAACATCACAACTTGGTTTTACAATTGGTTGTGANTNGCTTTCACACTTTACGGTTACTTAACAACTACCACNNTTGGCCAACGCAGCNNCGAAGTCCCTGGCTACGNGGGANTACAGAATAACAGGGCGAAGTTTAAACACCAAGTGNGTNAACTGTACCTCCCTAATACCGGCCGGAGTNCCCATGACAACGGCTTAGTTTTACNGNGTGGANTNGTNAACACCAGTGGGGGTTCNCGGCGGTAAACGCCGGNGATCCGGCGTTTNGNGGCACTGTCAACGTGNGTNGTCCCGCCACTTATTTTGGGGCCTTTAGTTCCCCTCTCTNNNACTCCGNCGCTCGGGNGACNCGTTCTTCNCTNGGGTTGCGTTGGNTTGGGTGTTTCTCCCTTTTTGTCNTTTTCCCNTTCGCTGGGTGCTTGGCCTGGTGGTCCTTTCGCGNGTGGGNNCCNTTTTNTCGGTGCTCCTTTTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6346#0 -----TTTTTTTTAACG---AATGGTTTGTTTATTGATACATGGTTGTATTTGAAGCGTT 52
consensus_6346#1 GCAGAATCGCCCCGAGGTTTATTTTTTTGTATATAGATAAATGGTTGTATTTGAAGCGTA 60
* * * * * ***** *** **** *******************
consensus_6346#0 TTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAA 112
consensus_6346#1 TTTAACCTAAGATGGTTTAGAAAACCGCCCCGAAAAGGCAAACCGGCTGTGTCAATAGAA 120
************************************************************
consensus_6346#0 TAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGT-CGTCACGTTTTGGAAGCATTT-TT 170
consensus_6346#1 TAGCAGCTCGGCAGCTCGGAGGCAACGGTGCGCGTACGTCACGTATTGGAAGCATATATT 180
*********************************** ******** ********** * **
consensus_6346#0 GCT-TGCGTCAGTAGTACT-GCTAT-CCAGTGCTGAATATGTATTCCTTACAGCTTT--A 225
consensus_6346#1 GCTATGCGTCACTAGTACTAGGTATACCAGTGCTGAATATGTATTCCTCACAGGNTTTAA 240
*** ******* ******* * *** ********************** **** ** *
consensus_6346#0 ACTGTATGTTTTA--ACGTGCTCGCGGGCAGGCTTGCTTGAATGG-CATCT-TTAACG-T 280
consensus_6346#1 ACGGTATATTTTCTTACGTGCTCGCCGA-AGGCTTGCTTAAATGGGCNTCTATTANCGGT 299
** **** **** ********** * ********** ***** * *** *** ** *
consensus_6346#0 AAGCGATTGG--AATAAA-ATCA--ACTTG-TTTTACAATTGGGTGATGCTTCACACTTA 334
consensus_6346#1 AAGCGATTGGGGAATAAACATCACAACTTGGTTTTACAATTGGTTG-TGANTNGCTTTCA 358
********** ****** **** ***** ************ ** ** * * * *
consensus_6346#0 CGTACTACAATTAAAACATTGCAAAGAGCACGAAGTCATGGTAGGGGATAAAATAAAGGC 394
consensus_6346#1 CACTTTACGGTTA---CTTAACAACTACCACNNTT----------GGCCAACGCAGCNNC 405
* *** *** * * *** * *** ** ** * *
consensus_6346#0 GAGTTAACCAGCGTAACGTACTCCTATCGCAACGATACAAGAAAAGCTTATTTAAGTGAT 454
consensus_6346#1 GAAGTCCCTGGC--TACGNGGGANTA-CAGAATAACAGGGCGAA-----GTTTAAACACC 457
** * * ** *** ** * ** * * ** *****
consensus_6346#0 GAAAAAGGGGTTTCGCGTAAACCGAACGTAAAGAAAGGTGCCCGCATATTGAATTATCCT 514
consensus_6346#1 AAG----------TGNGTNAACTGTACCTCCCTAATACCGGCCG------GAGTNCCCAT 501
* * ** *** * ** * ** * *** ** * * *
consensus_6346#0 CTAATCGAAAGAATCTTAATGTGTGTTGTTTCATTTTCTTCCTCGGTGTGCTGGTATACG 574
consensus_6346#1 GACAACGGCTTAGTTTTACNGNGTG--GANTNGTNAACACCAGTGGGG-GTTCNCG-GCG 557
* ** * * *** * *** * * * * * ** * * * **
consensus_6346#0 GTGGCCTTTAGCACATTACCGCGCAGTGCAACATTATTGTCTTCCGTTGCATTCGTCACT 634
consensus_6346#1 GTAAACGCCGGNGA--TCCGGCGTTTNGNGGCACTGTCAACGTGNGTNGT-CCCGCCACT 614
** * * * * *** * ** * * * * ** * ** ****
consensus_6346#0 CTCAAAATTTCGGGATTATCAACGATACATTCGCAGGCAAACATTTTGCGCGTCAGTCCG 694
consensus_6346#1 T-----ATTTTGGGGCC--------------------------TTTAGTTCCCCTCTCTN 643
**** *** *** * * * **
consensus_6346#0 ACAGGATAGCGGCGACATTCGGGCTGCTCGCTCAGCGTACGTATAATGCCGAGATCGAGC 754
consensus_6346#1 NNA------CTCCGNCGCTCGGGNGACNCGTTCTTCNCTNGGGTTGCGTTG-GNTTGGGT 696
* * ** * ***** * ** ** * * * * * * * * *
consensus_6346#0 AGATAGTACTGCTTCTCCTCGTCCTGGCTGCTGGCCAACAGTGCACGGCACCAGATGCCT 814
consensus_6346#1 GTTTCTCCCTTTTTGTCNTTTTCCCNTTCGCTGG------GTGCTTGGC--CTGGTG--- 745
* ** ** ** * *** ***** **** *** * * **
consensus_6346#0 TCGAACTGTAGCAGGAAGACTAGATTTTCCTCCTCCGGCCGGTACGGGTTCCGGGTCGGC 874
consensus_6346#1 --GTCCTTTCGCGNGTGGGNNCCNTTTTNTCGGTGCTCCTTTTATG-------------- 789
* ** * ** * * **** * * * ** *
consensus_6346#0 CGCTCCGCGCTGTTCGCATTCGTTCAGCATGTTGGCGAACTCCAGGCTGTCCGATTTCAG 934
consensus_6346#1 ------------------------------------------------------------
consensus_6346#0 TATACACCGTCAGCTGGTTCAAACCGTCCAGCTCCGAGGCTTCCAC 980
consensus_6346#1 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||