These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 761 fasta sequence [CCGGAAAAACATTGTCCTTCCAGCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGTGCTGGTGGCGGCGGCGGCGGTGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACGGCGGTTCCGGGGGTGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGCGGTGGTGGTGGTGGCAGTGGTGGCAGTGGAGGTGGTGCAGTGACCTCGCCACCGAACGTAGGCTTTGTCGCGTATCCGCCAGCCATTCCACAGCTACCCGTCGTACCGCCGACCGTTCCGTTTCAGTATCCGGCTGGCCCGAGCGGTCAACATTTCGGTGCGGCTTCCGCACCACCACCGTTCAATTACAACATACCGCCCAACTCGTCGGAGAAGGAAGAGATTAAGGATTTGA] [+] EMBL BM634169 [CCGGAAAAACATTGTCCTTCCAGCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGTGCTGGTGGCGGCGGCGGCGGTGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACGGCGGTTCCGGGGGTGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGCGGTGGTGGTGGTGGCAGTGGTGGCAGTGGAGGTGGTGCAGTGACCTCGCCACCGAACGTAGGCTTTGTCGCGTATCCGCCAGCCATTCCACAGCTACCCGTCGTACCGCCGACCGTTCCGTTTCAGTATCCGGCTGGCCCGA ] [+] EMBL BX618667 [ GCCGGACCCGCTCGTGATGAAGGACGACCATGCGAGCATTATGGAGGGGGAGATTGACGGTGCTGGTGGCGGCGGCGGCGGGGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACGGCGGTTCCGGTGGCGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGTGGTGGTGGTGGTGGCAGTGGTGGCAGCGGAGGTGGTGCCGTGACCTCGCCACCGAACGTAGGCTTTGTCGCGTATCCGCCAGCCATTCCACAGCTACCCGTCGTACCGCCGACCGTTCCGTTTCAGTATCCGGCTGGCCCGAGCGGTCAACATTTCGGTGCGGCTTCCGCACCACCACCGTTCAATTACAACATACCGCCCAACTCGTCGGAGAAGGAAGAGATTAAGGATTTGA] consensusID : consensus_6348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [CCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCGCCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGAGTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGT] [+] EMBL BM581054 [CCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCGCCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGAGTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGT] [+] EMBL BX625092 [ GCCCTCATTTACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTGGCATTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCANGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCNGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCNGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTA ] consensusID : consensus_6348#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATT] [+] EMBL BM617766 [CCGCGGACGCGTGGGCGGACGCGTGGGTTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6348#1 ----------------------CCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAG 38 consensus_6348#2 ---------------------------------------------------CCGCGGACG 9 consensus_6348#0 CCGGAAAAACATTGTCCTTCCAGCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAG 60 * * consensus_6348#1 TGTCTGTGGCTGT-TGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGC 97 consensus_6348#2 CGTGGGCGGACGCGTGGGTTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGC 69 consensus_6348#0 TGTCTGTGGCTGT-TGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGC 119 ** * ** * ** **** ************************************* consensus_6348#1 TGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGG 157 consensus_6348#2 TGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGG 129 consensus_6348#0 TGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGG 179 ************************************************************ consensus_6348#1 AACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAAC 217 consensus_6348#2 AACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAAC 189 consensus_6348#0 AACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAAC 239 ************************************************************ consensus_6348#1 GGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGA 277 consensus_6348#2 GGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGA 249 consensus_6348#0 GGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGA 299 ********************** ************************************* consensus_6348#1 TCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGG 337 consensus_6348#2 TCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGG 309 consensus_6348#0 TCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGG 359 **************** ***************** ************************* consensus_6348#1 AGCTGGACGAGGGCATCGAGGAGGCGG------TGAGCAGCATCATCTGGGTGGC-GCCG 390 consensus_6348#2 AGCTGGACGAGGGCATCGAGGAGGCGG------TGAGCAGCATCATCTGGGTGGC-GCCG 362 consensus_6348#0 AGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACG 419 *** **** * * * * *** * ***** ** *** * * ** consensus_6348#1 CGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCT--CGGACATATTCACGCTGAAGT 448 consensus_6348#2 CGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCT--CGGACATATTCACGCTGAAGT 420 consensus_6348#0 GTGCTGGTGGCGGCGGCGGCGGTGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACG 479 *** ***** * * ** * * ** ****** ** *** * consensus_6348#1 ACGG--CAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCGCCCCACAAGGTGTCGGA 506 consensus_6348#2 ACGG--CAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCGGA 478 consensus_6348#0 GCGGTTCCGGGGGTGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGCG-GTGGTGGTGGT 538 *** * ** * * * * * ** * ** * **** ** consensus_6348#1 CAAGCTGATGCACAAGCTGGCGATACAGG-----CCCCGCCGAAGCTGCTGGTGGAGAAG 561 consensus_6348#2 CAAGCTGATGCACAAGCTGGCGATACAGG-----CCCCGCCGAAGCTGCTGGTGGAGAAG 533 consensus_6348#0 GGCAGTGGTGGCAGTGGAGGTGGTGCAGTGACCTCGCCACCGAACGTAGGCTTTGTCGCG 598 ** ** * ** * * *** * ** ***** * * * * consensus_6348#1 TATCTGATCGAGATAGCGAAGATCTTTAACGTCGAGTACGAGCCGGACCCGCTCGTGATG 621 consensus_6348#2 TATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCGGACCCGCTCGTGATG 593 consensus_6348#0 TATCCGCCAGCCATTCCACAGCTACCCGTCGT--ACCGCCGACCGTTCCGTTTCAGTATC 656 **** * * ** * ** * *** * * *** ** ** ** consensus_6348#1 AAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGT------------------ 663 consensus_6348#2 AAGGACGACCATTCGAGCATTATGGATGGGGAGATT------------------------ 629 consensus_6348#0 CGGCTGGCCCGAGCGGTCAACATTTCGGTGCGGCTTCCGCACCACCACCGTTCAATTACA 716 * * ** ** ** ** * * * ** consensus_6348#1 --------------------------------------------- consensus_6348#2 --------------------------------------------- consensus_6348#0 ACATACCGCCCAACTCGTCGGAGAAGGAAGAGATTAAGGATTTGA 761 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||