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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1005 fasta sequence
[CCGCGGACGCGTGGGCGGGTCGCCATCGCCACCAGTGGGAAAAAAATAACAAAGCAATCCAGCAGCAGGGCGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTCTCTATTTCAGTAAACACCCACACAAACACACAAGCAAATCGTTTACCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCCAACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTAGGCAATGTGCCGAGAGAAAGCGGTCTGATGAACATCCTGTCCAGCCTACAGCTCGACAAAGAGGGACAGCAGGGGCAGCAGACCCGACAGCCCAAGGATGTGAACGTGGAGAAGTCGACGCTAAACCCACTGGCCGCCGAGTTTGTGCCATCGCTGCGTGCGCTCGTCGCTCCAACGTCCTACTGAAGCCACAGTCGGGCGGGCAACAAGCATCGAAAAAGGTATGCAAA]
[+] EMBL BM637615 [CCGCGGACGCGTGGGCGGGTCGCCATCGCCACCAGTGGGAAAAAAATAACAAAGCAATCCAGCAGCAGGGCGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTCTCTATTTCAGTAAACACCCACACAAACACACAAGCAAATCGTTTACCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCCAACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAG ]
[+] EMBL BM608468 [ CCGACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCCAACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTAGGCAATGTGCCGAGAGAAAGCGGTCTGATGAACATCCTGTCCAGCCTACAGCTCGACAAAGAGGGACAGCAGGGGCAGCAGACCCGACAGCCCAAGGATGTGAACGTGGAGAAGTCGACGCTAAACCCACTGGCCGCCGAGTTTGTGCCATCGCTGCGTGCGCTCGTCGCTCCAACGTCCTACTGAAGCCACAGTCGGGCGGGCAACAAGCATCGAAAAAGGTATGCAAA]
consensusID : consensus_6351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence
[GGCAGAATCGGCACGATGGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCTAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTAAACACCCACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCG--GCAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCAACGAGGAAGCGACTGGCCCCGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATCGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTTTGGCAATGTGCCGAGAGAAAGCGGTCTGAATTGAAACATCCCTTGTTCCAGGCTAACAGGCTTCGACAANAGAAGGGGACACGGCCATAGGGGCAGCCAGAAACCCGCCAGGCCCAACAGGGTTGTTGAAACGTTGGGAGAACAGTCCGACGCTTGAACCCACTGGCCGCCCGGAGTTTTGG]
[+] EMBL BX467762 [GGCAGAATCGGCACGATGGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCTAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTAAACACCCACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCG GCAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAGCATGAGCACACCGCCAACGAGGAAGCGACTGGCCCCGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAGGACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGCATCGAGGCGATCGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCTGGTTTGGCAATGTGCCGAGAGAAAGCGGTCTGAATTGAAACATCCCTTGTTCCAGGCTAACAGGCTTCGACAANAGAAGGGGACACGGCCATAGGGGCAGCCAGAAACCCGCCAGGCCCAACAGGGTTGTTGAAACGTTGGGAGAACAGTCCGACGCTTGAACCCACTGGCCGCCCGGAGTTTTGG]
[+] EMBL BM601964 [ ccgAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACCAAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTACTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCAGGCTGAAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGAGTAAACACCCACACAAACACACAAGCAAATCGTTTGCCGATCGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCGGCAGCAGCTCGAACACCTACACACACATCACCCTGCACGCGGGCAACGGGTTCAATCGGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCGCGATCCCGTATCCGAACGATCCGTACGACTCGGACGGGGACAG ]
consensusID : consensus_6351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[CCGAGGTTTGGTCGTGCAAACTTCCGGCAGGCTGTNAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGCAGTAAACACCCACACAAACACACAAGCAAATCGTTGCCGATACGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGTGCAGCAGCTCGAACACCTACACACACATCTACCCTGCACGCGGGCAACGTGGTTCAATCGGTGGCNGCTGGTGGCTGTGACGNGCGNGGTTGTGCAAGTGCNGACTGGCNAGAATACCGTGTTGTGCTCGTGTACCTGCTANAGCATCTCGCTGATACCCTGTATCCTGAACGTATACCTGTACGACTCGGACCGTGGGACAGGCATTGNAGCACACACTGGGCCAACGAGAGGAACGNCGGANCTTGGCGCCCTGGGCGGGGACAGGAACNCTTATTGGCCGACGAGTACCAATTGGTNGCGAATTGCGAGCGGAACGTATGGTGGAACGAAGTATACGGAACAATTGGCGAAGGGGAAG]
[+] EMBL AL932184 [CCGAGGTTTGGTCGTGCAAACTTCCGGCAGGCTGTNAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTTCTCCTTGCAGTAAACACCCACACAAACACACAAGCAAATCGTTGCCGATACGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTGTGCAGCAGCTCGAACACCTACACACACATCTACCCTGCACGCGGGCAACGTGGTTCAATCGGTGGCNGCTGGTGGCTGTGACGNGCGNGGTTGTGCAAGTGCNGACTGGCNAGAATACCGTGTTGTGCTCGTGTACCTGCTANAGCATCTCGCTGATACCCTGTATCCTGAACGTATACCTGTACGACTCGGACCGTGGGACAGGCATTGNAGCACACACTGGGCCAACGAGAGGAACGNCGGANCTTGGCGCCCTGGGCGGGGACAGGAACNCTTATTGGCCGACGAGTACCAATTGGTNGCGAATTGCGAGCGGAACGTATGGTGGAACGAAGTATACGGAACAATTGGCGAAGGGGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6351#0 CCGCGGACGCGTGGGCGGGTCGCCATCGCCACCAGTGGGAAAAAAATAACAAAGCAATCC 60
consensus_6351#1 ----------------------------------------------------GGCAGA-- 6
consensus_6351#2 ------------------------------------------------------------
consensus_6351#0 AGCAGCAGGGCG-AACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACC 119
consensus_6351#1 ATCGGCACGATGGAACGCACAAAAAGAAACGAACAAAACGCTCGGCCCCGAAGGTGTACC 66
consensus_6351#2 ------------------------------------------------------------
consensus_6351#0 AAATTTTCTCAAGTGAACTTTACATTTTCGAGCGATTGTTGAAATTTTCGTACGAAATTA 179
consensus_6351#1 AAATTTTCTCAAGTGAACTTTACATTTTCTAGCGATTGTTGAAATTTTCGTACGAAATTA 126
consensus_6351#2 ------------------------------------------------------------
consensus_6351#0 CTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCA 239
consensus_6351#1 CTTGCGTAGCGTACAAATTGGTGTCAACGCGCATTTTGGTTCGTGCAAAACCTTCCGGCA 186
consensus_6351#2 ----------------------------CCGAGGTTTGGT-CGTGCAAA--CTTCCGGCA 29
** ****** ******** *********
consensus_6351#0 GGCTG-AAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTT 298
consensus_6351#1 GGCTG-AAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTT 245
consensus_6351#2 GGCTGTNAATTCGAAGTAACGCAAAATTGCGACGTTGTGAGCTACATTATTAAGCGTTTT 89
***** *****************************************************
consensus_6351#0 CTCCTTG-AGTCTCTATTTCAGTAAACACCCACACAAACACACAAGCAAATCGTTTACCG 357
consensus_6351#1 CTCCTTG-AGT------------AAACACCCACACAAACACACAAGCAAATCGTTTGCCG 292
consensus_6351#2 CTCCTTGCAGT------------AAACACCCACACAAACACACAAGCAAATCGTT-GCCG 136
******* *** ******************************** ***
consensus_6351#0 AT-CGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGCG 416
consensus_6351#1 AT-CGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTG 351
consensus_6351#2 ATACGGTCCTGCAAGCGACAGAGCAAATGAAAATGAAGATGCCCGACAACAACATCGGTG 196
** ******************************************************* *
consensus_6351#0 -GCAGCAGCTCGAACACCTACACACACATC-ACCCTGCACGCGGGCAACG-GGTTCAATC 473
consensus_6351#1 -GCAGCAGCTCGAACACCTACACACACATC-ACCCTGCACGCGGGCAACG-GGTTCAATC 408
consensus_6351#2 TGCAGCAGCTCGAACACCTACACACACATCTACCCTGCACGCGGGCAACGTGGTTCAATC 256
***************************** ******************* *********
consensus_6351#0 GGGGCGCTGGTGGCGGCGGCGGTGGAGGCGACGCAGAAACGGTGGCGGTCCGCAACACCG 533
consensus_6351#1 GGGGCGCTGGTGGCGGCGGCGGC--AGGCGACGCAGAAACGGTGGCGGTCCGCAACACCG 466
consensus_6351#2 GGTG-GCNGCTGGTGGCTGTGAC--GNGCGNGGTTGTGCAAGTGCNGACTGGCNAGAATA 313
** * ** * *** *** * * *** * * *** * ** * *
consensus_6351#0 CGATCCCGTATCCGAACGATCCGTACGAC-TCGGACGGGGACAGCATGAGCACACCGCCC 592
consensus_6351#1 CGATCCCGTATCCGAACGATCCGTACGAC-TCGGACGGGGACAGCATGAGCACACCGCC- 524
consensus_6351#2 CCGTGTTGTGCTCGTGTACCTGCTANAGCATCTCGCTGATACCCTGTATCCTGAACGTA- 372
* * ** ** ** * ** * * ** * * * **
consensus_6351#0 AACGAGGAAGCCACTGGCCCTGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAG 652
consensus_6351#1 AACGAGGAAGCGACTGGCCCCGCGGACGACTTTGCCGAGTACATGTGGATGGAGAACGAG 584
consensus_6351#2 TACCTGTACGACTCGGACCGTGGGACAGGCATTG--NAGCACACACTG--GGCCAACGAG 428
** * * * * * ** * * * * *** ** *** * ** ******
consensus_6351#0 GACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGC 712
consensus_6351#1 GACGAGTTCGACATGCAGGAGATGCAACGGCTAGAGGAGGAAGAGCTGATGGACCAGTGC 644
consensus_6351#2 AGGAACGNCGGANCTTGG----CGCCCTGGGCGGGGACAGGAACNCTTATTGGCCGACGA 484
* ** * ** ** * * * * ** ** * ** *
consensus_6351#0 ATCGAGGCGAT-GATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCT 771
consensus_6351#1 ATCGAGGCGATCGATGATGGATGAGATGGCTTCGGCGGAGCGGATGGCCTCGACGGCGCT 704
consensus_6351#2 GT---ACCAATTGGTNGCGAATTGCG-------AGCGGAACGTATGGTGG-AACGAAGTA 533
* * ** * * * ** ***** ** **** *** *
consensus_6351#0 GGTA-GGCAATGTGCCGAGAGAAAGCGGTCTGATGAACATCCTGTCCAGCCTACAGCTCG 830
consensus_6351#1 GGTTTGGCAATGTGCCGAGAGAAAGCGGTCTGAATTGAAACATCCCTTGT-TCCAGGCTA 763
consensus_6351#2 TACGGAACAATTGGCGAAGGGGAAG----------------------------------- 558
**** ** ** * ***
consensus_6351#0 ACAAAGAGGGACAGCAGGGGCAGCAGACCCGACAGCCCAAGGATGTGAACGTGGAGAAGT 890
consensus_6351#1 ACAGGCTTCGACAANAGA---AGGGGAC---ACGGCC-----ATAGGGGCAGCCAGAAAC 812
consensus_6351#2 ------------------------------------------------------------
consensus_6351#0 CGACGCTAAACCCACT--GGCCGCCGAGTTTGTGCCATCGCTGCGTGCGCTCGTCGCTCC 948
consensus_6351#1 C--CGCCAGGCCCAACAGGGTTGTTGAAACGTTGGGAGAACAGTCCG-ACGCTTGAACCC 869
consensus_6351#2 ------------------------------------------------------------
consensus_6351#0 AACGTCCTACTGAAGCCACAGTCGGGCGGGCAACAAGCATCGAAAAAGGTATGCAAA 1005
consensus_6351#1 ACTGGCCGCCCGGAGTTTTGG------------------------------------ 890
consensus_6351#2 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||