cluster # 6356

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Anopheles gambiae
cluster # 6356 cluster # 6356 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6356#0 length = 793 sequences # 4

consensus_6356#1 length = 576 sequences # 1

consensusID : consensus_6356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 793
fasta sequence

                              [ATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGTTACAGCCCCAAGTCACTT-GNTTTCAGCTAGATTTGAAGCATCCNAAACTATGACATATGAAACTGTCCAATAAA-TGTAC]

[+] EMBL BX616674             [ATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACTAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAA                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX622322             [                                     GATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCTGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTTTTAGTTTAGGNTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGNTACAGCCCCAAGTCACTTGGTTTTCAGCTAGATTTGAAGCATCC AAACTATGACATATGAAACTGTCCCATAAA      ]
[+] EMBL BX626758             [                                                 AGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGNCATCATTTAATGNTGGGGCAGTTACAGCCCCAAGTCACTT GNTTTCAGCTAGATTTGAAGCATCCNAAACTATGACATATGAAACTGTCCAATAAT TGTAC]
[+] EMBL BX624402             [                                                                             TTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAGTGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATGGTAACACGGGCGATCAGTTTTACTTCGTCACGAAACCGTTGGTGGAAACGACCGCCAAGGTGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTNGGTGGCTTCCAGAAACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACGTCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGTTACAGCCCCCAGTCACTT GNTTTCAGCTAGATTTGAAGCATCCAAAACTATGACATATGAAACTGTCCAATAAATTGTAC]




>consensus_6356#0
ATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTT
TATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATG
ATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCA
ATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAA
AGGAGGTGGACAACTTCCCTTCCAACATCTACAGCAAGTACGACAATCTGCAGCACAAAG
TGAAGAGCTTCTTCGATGCTGAGCCCATCATTGATAACATACGAGAATCGGACAAGTATG
GTAACACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCGCCAAGG
TGAACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGA
AACAGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGA
AAGGAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGG
TTGTATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTC
ACGTCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGTTACAGC
CCCAAGTCACTTGNTTTCAGCTAGATTTGAAGCATCCNAAACTATGACATATGAAACTGT
CCAATAAATGTAC

consensusID : consensus_6356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [GCAGAATNGGCACGATGCGCTTTCAGTAACCAATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGGTGGGACAAGCTTTCCCTTCCAAANATCTACAGCAAAGTACGACAATCTGGCAGGCACACAGAGTGAAAGAGCTTCTTCGACTGCTAGAGGCCCATCATTGAGTGACAGTACNGAGAAATCGGGACCAAGGTACTTGGTAACCACCGGGGACCGAATCAAGGTTTTTACTTTCATTCTAGCGGCANAAACCGGTTGCGGTGGGAAAACGGAGCCGNGCAANGGGTGAANCAGTGGTTTCCATTCNCAGAGCCGTCCGGGGATNAGTAGCCGGAGGCCCAGAGGAACAGCNCGATGANC]

[+] EMBL BX468793             [GCAGAATNGGCACGATGCGCTTTCAGTAACCAATTGAAGGAAAAGTGCGAAATTAGCAGAAAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGTTAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGACGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTACGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGGTGGGACAAGCTTTCCCTTCCAAANATCTACAGCAAAGTACGACAATCTGGCAGGCACACAGAGTGAAAGAGCTTCTTCGACTGCTAGAGGCCCATCATTGAGTGACAGTACNGAGAAATCGGGACCAAGGTACTTGGTAACCACCGGGGACCGAATCAAGGTTTTTACTTTCATTCTAGCGGCANAAACCGGTTGCGGTGGGAAAACGGAGCCGNGCAANGGGTGAANCAGTGGTTTCCATTCNCAGAGCCGTCCGGGGATNAGTAGCCGGAGGCCCAGAGGAACAGCNCGATGANC]




>consensus_6356#1
GCAGAATNGGCACGATGCGCTTTCAGTAACCAATTGAAGGAAAAGTGCGAAATTAGCAGA
AAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGT
TAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGA
CGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTA
CGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGGTGGGACAAGCTTTCCCTTCCA
AANATCTACAGCAAAGTACGACAATCTGGCAGGCACACAGAGTGAAAGAGCTTCTTCGAC
TGCTAGAGGCCCATCATTGAGTGACAGTACNGAGAAATCGGGACCAAGGTACTTGGTAAC
CACCGGGGACCGAATCAAGGTTTTTACTTTCATTCTAGCGGCANAAACCGGTTGCGGTGG
GAAAACGGAGCCGNGCAANGGGTGAANCAGTGGTTTCCATTCNCAGAGCCGTCCGGGGAT
NAGTAGCCGGAGGCCCAGAGGAACAGCNCGATGANC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6356#0      --------------------------------ATTGAAGGAAAAGTGCGAAATTAGCAGA 28
consensus_6356#1      GCAGAATNGGCACGATGCGCTTTCAGTAACCAATTGAAGGAAAAGTGCGAAATTAGCAGA 60
                                                      ****************************

consensus_6356#0      AAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGT 88
consensus_6356#1      AAGAAACATGATTGTTCGATCAGGTGCTGTTTTATCGCTGCTTGGAGCGTTCCTGGCTGT 120
                      ************************************************************

consensus_6356#0      TAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGA 148
consensus_6356#1      TAGTGGGGCTCCCTACGGTGGTGGCCACGATGATGGCGAGTTCCGGGACAAAAAGTACGA 180
                      ************************************************************

consensus_6356#0      CGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTA 208
consensus_6356#1      CGAACAGTTGAAACAGGTCTCCAAAGTGGGCAATACCTATGTGGCCGCACTGGAAATTTA 240
                      ************************************************************

consensus_6356#0      CGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGT--GGACAA--CTTCCCTTCCA 264
consensus_6356#1      CGACAACCCGCCCGATCAGGACAATGCCCGAAAGGAGGGTGGGACAAGCTTTCCCTTCCA 300
                      **************************************   ******   **********

consensus_6356#0      A-CATCTACAGCAA-GTACGACAATCTG-CAG---CACAAAGTGAA-GAGCTTCTTCGA- 316
consensus_6356#1      AANATCTACAGCAAAGTACGACAATCTGGCAGGCACACAGAGTGAAAGAGCTTCTTCGAC 360
                      *  *********** ************* ***   **** ****** ************ 

consensus_6356#0      TGCTGA--GCCCATCATTGA----TAACATACGAGAATCGGAC---AAGTA--TGGTAAC 365
consensus_6356#1      TGCTAGAGGCCCATCATTGAGTGACAGTACNGAGAAATCGGGACCAAGGTACTTGGTAAC 420
                      ****    ************     *  *      ******     * ***  *******

consensus_6356#0      -ACGGGCGATCAGTTTTACTTCATCACGAAACCGTTGGTGGAAACGACCG-CCAAGGTGA 423
consensus_6356#1      CACCGGGGACCGAATCAAGGTTTTTACTTTCATTCTAGCGGCANAAACCGGTTGCGGTGG 480
                       ** ** ** *   *  *  *  * **        * * ** *   ****     **** 

consensus_6356#0      ACATGTTCATCAACTCGGTGATAGCGGCGCCCAAGAAGCTGCTCGGTGGCTTCCAGAAAC 483
consensus_6356#1      GAAAACGGAGCCGNGCAANGGGTGAANCAGTGGTTTCCATTCNCAGAGCCGTCCGGGGAT 540
                        *     * *    *   *   *   *           * * * * * * *** *  * 

consensus_6356#0      AGGCCAACGATAAGCTGAACGATGTCGGTGCGGTATTGGTTGGATTGTAGTGTTGGAAAG 543
consensus_6356#1      NAGTAGCCGGAGGCCCAGAGGA--ACAGCNCGATGANC---------------------- 576
                        *    **     *   * **   * *  ** *                          

consensus_6356#0      GAAAAAAGAGGAGTGTTTTCTGGTCGAAGAGGACTGTTTTTTGTGTGTAAGGAAAGGTTG 603
consensus_6356#1      ------------------------------------------------------------
                                                                                  

consensus_6356#0      TATATACAAGGTAGTCTTAAGATGCTTAAAGATAGTTTGTTAGTTTAGGTTTCTTTCACG 663
consensus_6356#1      ------------------------------------------------------------
                                                                                  

consensus_6356#0      TCCTTCCATTACCGTGATATGCAAATTGCCATCATTTAATGTTGGGGCAGTTACAGCCCC 723
consensus_6356#1      ------------------------------------------------------------
                                                                                  

consensus_6356#0      AAGTCACTTGNTTTCAGCTAGATTTGAAGCATCCNAAACTATGACATATGAAACTGTCCA 783
consensus_6356#1      ------------------------------------------------------------
                                                                                  

consensus_6356#0      ATAAATGTAC 793
consensus_6356#1      ----------