cluster # 6368

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Anopheles gambiae
cluster # 6368 cluster # 6368 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6368#0 length = 728 sequences # 3

consensus_6368#1 length = 578 sequences # 2

consensusID : consensus_6368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 728
fasta sequence

                              [CCGCCAGCAGCAGTGGGCCATCGAGTGTGTTGGGCGAGCTTCTGGAGAAGGGCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTGCAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGTGACTGCAGGCGGCAGGAAGCAAAAGCATACCGGCCCCTTCGTATCTTGGCACGGGCGAACTGTCGGACGAGTATCGGCCAACGTACACGTACCAGTTGCCGCTAAACAATCAGATTGACTCAAGCGAACCGATTAACTTTGCCGTTGGTCCCAGCGATCCTCGATTCTACGACCAAACTACTGGCCTGGGCCGTGAATCGGACCTCGATGAACTCGGCGGTGCGCTGGGGTGACCGTGGCGATGGACCGTCTCCCTACGACAGCACGGAA]

[+] EMBL BM584789             [CCGCCAGCAGCAGTGGGCCATCGAGTGTGTTGGGCGAGCTTCTGGAGAAGGGCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTGCAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGTGACTGCAGGCGGCAGGAAGCAAAAGC                                                                                                                                                                                                                                                    ]
[+] EMBL BM580560             [                       ccgGTGTTGGGCGAGCTTCTGGAGAAGGGCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTGCAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGCGACTGCAGGCGGCAGGAAGCAAAAGCATACCGGCCCCTTCGTATCTTGGCACGGGCGAACTGTCGGACGAGTATCGGCCAACGTACACGTACCAGTTGCCGCTAAACAATCAGATTGACTCAAGCGAACCGATTAACTTTGCCGTTGGTCCCAGCGATCCTCGATTCTACGACCAAACTACTGGCCTGGGCCGTGAATCGGACCTCGATGAACTCGGCGGTGCGCTGGGGTGACCGTGGCGATGGACCGTCTCCCTACGACAGCACGGAA]
[+] EMBL BM632731             [                                                                             ccgCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTGGCTCATTTTTGCTACAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGGGGACATCAAAAGATGGACATGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGC                                                                                                                                                                                                                                                                                                 ]




>consensus_6368#0
CCGCCAGCAGCAGTGGGCCATCGAGTGTGTTGGGCGAGCTTCTGGAGAAGGGCCCGCACA
ACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGTGGTTGTGGCGTGTGTG
GCTCATTTTTGCTGCAAAAGCATACATTTGTAGCATTCAATTTTGTTTGGCAGCATATTT
CATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCAT
TCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGA
CAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGAC
ATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGA
GGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGTGACTGCAGGCGGCAGGAAGCAA
AAGCATACCGGCCCCTTCGTATCTTGGCACGGGCGAACTGTCGGACGAGTATCGGCCAAC
GTACACGTACCAGTTGCCGCTAAACAATCAGATTGACTCAAGCGAACCGATTAACTTTGC
CGTTGGTCCCAGCGATCCTCGATTCTACGACCAAACTACTGGCCTGGGCCGTGAATCGGA
CCTCGATGAACTCGGCGGTGCGCTGGGGTGACCGTGGCGATGGACCGTCTCCCTACGACA
GCACGGAA

consensusID : consensus_6368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 578
fasta sequence

                              [CCGCCCACGCGTCCGGCAGAGCATACGGAAGAGAAAGAAAATTTGCTACCACTCATCAATTTTGCATTTTTGCAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTACCAAACGTCTTTCGAACGCCCCGCAGTCATCGATGTGCTGGTGTATTTGTAAAGTAAAAACGTAGCTTTGTGAAATAATGCCGTTCATGCACTGTAGTGTACCGGATTGAGCGGAACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCGATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCT]

[+] EMBL BM622242             [CCGCCCACGCGTCCGGCAGAGCATACGGAAGAGAAAGAAAATTTGCTACCACTCATCAATTTTGCATTTTTGCAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTACCAAACGTCTTTCGAACGCCCCGCAGTCATCGATGTGCTGGTGTATTTGTAAAGTAAAAACGTAGCTTTGTGAAATAATGCCGTTCATGCACTGTAGTGTACCGGATTGAGCGGAACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCGATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCT]
[+] EMBL BM653934             [                                                                  ccgccgaAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTACCAAACGTCTTTCGAACGCCCCGCAGTCATCGATGTGCTGGTGTATTTGTAAAGTAAAAACGTAGCTTTGTGAAATAATGCCGTTCATGCACTGTAGTGTACCGGATTGAGCGGAACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCGATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTG                                                                                                                                                                                ]




>consensus_6368#1
CCGCCCACGCGTCCGGCAGAGCATACGGAAGAGAAAGAAAATTTGCTACCACTCATCAAT
TTTGCATTTTTGCAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTA
CCAAACGTCTTTCGAACGCCCCGCAGTCATCGATGTGCTGGTGTATTTGTAAAGTAAAAA
CGTAGCTTTGTGAAATAATGCCGTTCATGCACTGTAGTGTACCGGATTGAGCGGAACACT
GATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCGATAGCA
TATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACCTTTCGC
AGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATCGTCACC
TCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCAGTGTCG
TGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAACATTTTC
ATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6368#0      ------------------------------------------------------------
consensus_6368#1      CCGCCCACGCGTCCGGCAGAGCATACGGAAGAGAAAGAAAATTTGCTACCACTCATCAAT 60
                                                                                  

consensus_6368#0      ------------------------------------------------------------
consensus_6368#1      TTTGCATTTTTGCAGCATACGGTATTGTGAGAAAGCAGCACAAGCGGTAAGCAGCATGTA 120
                                                                                  

consensus_6368#0      ---------CCGCCAGCAGCAGTGGGCCATCGAGTGTGTTGGGCGAGCTTCTGGAGAAGG 51
consensus_6368#1      CCAAACGTCTTTCGAACGCCCCGCAGTCATCGA-TGTGCTGG-TGTATTTGTAAAGTAAA 178
                                  * * *  *     * ****** **** ***  *   ** *  ** *  

consensus_6368#0      GCCCGCACAACTCGCGCAAATAGAACCATCGTTAGGTGTTTGCTGCGTTAGGT-GGTTGT 110
consensus_6368#1      A---ACGTAGCTTTGTGAAATAATGCCGTTCATGCAC-TGTAGTGTACCGGATTGAGCGG 234
                           *  * **     *****   ** *   *     * *  **     * * *   * 

consensus_6368#0      GGCGTGTGTGGCTCATTTTTGCTGCAAAAGCA-TACATTTGTAGCATTCAATTTTGTTTG 169
consensus_6368#1      AACACTGATAACAAAACGGTGCACCATTAGCAGCACACCACACGGGGCACACACGGGTCG 294
                        *     *  *  *    ***  **  ****  ***      *      *    * * *

consensus_6368#0      GCAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACC 229
consensus_6368#1      ATAGCATATTTCATCTCTTCCCCTCCCGGACGGAAGCCGTGGGTGCAAGTAAAAATGACC 354
                        **********************************************************

consensus_6368#0      TTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATC 289
consensus_6368#1      TTTCGCAGCATTCGTTTGTCCTACATTGCAATATGGAACATCTTCTTGGTGCTACCAATC 414
                      ************************************************************

consensus_6368#0      GTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCA 349
consensus_6368#1      GTCACCTCTGACAATGACTATATCTCAGGCTACCATCGTCGATTGCACCCGATGACCCCA 474
                      ************************************************************

consensus_6368#0      GTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAAC 409
consensus_6368#1      GTGTCGTGGACATCAAAAGATGGACACGATACGAGGGACAATCTGGTGAAAACGATCAAC 534
                      ************************************************************

consensus_6368#0      ATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCTGCAGTGACTGCAGGCG 469
consensus_6368#1      ATTTTCATCGAGGAACAGGCGCGTCGCCGCTTTCTCGAGCATCT---------------- 578
                      ********************************************                

consensus_6368#0      GCAGGAAGCAAAAGCATACCGGCCCCTTCGTATCTTGGCACGGGCGAACTGTCGGACGAG 529
consensus_6368#1      ------------------------------------------------------------
                                                                                  

consensus_6368#0      TATCGGCCAACGTACACGTACCAGTTGCCGCTAAACAATCAGATTGACTCAAGCGAACCG 589
consensus_6368#1      ------------------------------------------------------------
                                                                                  

consensus_6368#0      ATTAACTTTGCCGTTGGTCCCAGCGATCCTCGATTCTACGACCAAACTACTGGCCTGGGC 649
consensus_6368#1      ------------------------------------------------------------
                                                                                  

consensus_6368#0      CGTGAATCGGACCTCGATGAACTCGGCGGTGCGCTGGGGTGACCGTGGCGATGGACCGTC 709
consensus_6368#1      ------------------------------------------------------------
                                                                                  

consensus_6368#0      TCCCTACGACAGCACGGAA 728
consensus_6368#1      -------------------