These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 823 fasta sequence [GCCTTTTTTTTTTTTTTTTTTTGAGATATGGTAACTGCTGTGTTAACGATAAAACAGG-TTTATTGCTTTGCCTTTGTCTTGGGTGGTGAAAGAAGTCCTTAGTCCTTCTGTGCGTTGGTTGCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAAATCCAATAGG] [+] EMBL CNS091N4 [GCCTTTTTTTTTTTTTTTTTTTGAGATATGGTAACTGCTGTGTTAACGATAAAACAGG TTTATTGCTTTGCCTTTGTCTTGGGTGGTGAAAGAAGTCCTTAGTCCTTCTGTGCGTTGGTTGCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCC ] [-] EMBL BX623631 [ AGGTTTTATTGCTTTGCCTTNGTCTTGGGTGGTGAAAGAAGTCCTTAGTCNTTCTGTGCGTTGGTTGCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTAGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTTTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGTCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCG ] [-] EMBL CNS091N3 [ TCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAAATCCAATAGG] consensusID : consensus_6371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [TGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACCGGACGCGTGGGT] [-] EMBL BM613688 [TGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACCGGACGCGTGGGT] consensusID : consensus_6371#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [TGGTGTTATCGTACAGCACGCGATACTTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCCATTCGGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAATAAACGCACGCTGCACGTGATTGCGG] [-] EMBL BM614303 [TGGTGTTATCGTACAGCACGCGATACTTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCCATTCGGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAATAAACGCACGCTGCACGTGATTGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6371#0 GCCTTTTTTTTTTTTTTTTTTTGAGATATGGTAACTGCTGTGTTAACGATAAAACAGGTT 60 consensus_6371#1 ------------------------------------------------------------ consensus_6371#2 ------------------------------------------------------------ consensus_6371#0 TATTGCTTTGCCTTTGTCTTGGGTGGTGAAAGAAGTCCTTAGTCCTTCTGTGCGTTGGTT 120 consensus_6371#1 ------------------------------------------------------------ consensus_6371#2 ------------------------------------------------------------ consensus_6371#0 GCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGG 180 consensus_6371#1 -------TGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGG 53 consensus_6371#2 ------------------------------------------------------------ consensus_6371#0 GAGATGGTGTTATCGTACAGCACGCGATACTT-CGTCGGCAGGAAGTAAAAGTTGACGAT 239 consensus_6371#1 GAGATGGTGTTATCGTACAGCACGCGATACTT-CGTCGGCAGGAAGTAAAAGTTGACGAT 112 consensus_6371#2 ----TGGTGTTATCGTACAGCACGCGATACTTTCGTCGGCAGGAAGTAAAAGTTGACGAT 56 **************************** *************************** consensus_6371#0 TTGGGCCGGCGGCCACACGACCC-ACTCGG-CCGTGTACAGGCGGATGAACTTGTCCCGT 297 consensus_6371#1 TTGGGCCGGCGGCCACACGACCC-ACTCGG-CCGTGTACAGGCGGATGAACTTGTCCCGT 170 consensus_6371#2 TTGGGCCGGCGGCCACACGACCCCATTCGGGCCGTGTACAGGCGGATGAACTTGTCCCGT 116 *********************** * **** ***************************** consensus_6371#0 ATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAAC 357 consensus_6371#1 ATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAAC 230 consensus_6371#2 ATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAAC 176 ************************************************************ consensus_6371#0 AGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGC 417 consensus_6371#1 AGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGC 290 consensus_6371#2 AGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGC 236 ************************************************************ consensus_6371#0 CCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACA 477 consensus_6371#1 CCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACA 350 consensus_6371#2 CCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACA 296 ******************************** *************************** consensus_6371#0 CCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGC 537 consensus_6371#1 CCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGC 410 consensus_6371#2 CCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGC 356 ***************** ****************************************** consensus_6371#0 TCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACC 597 consensus_6371#1 TCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACC 470 consensus_6371#2 TCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACC 416 ***** ******************************************** ********* consensus_6371#0 GATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTC 657 consensus_6371#1 GATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTC 530 consensus_6371#2 GATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTC 476 ************************************************************ consensus_6371#0 CGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCGTACAATACTGAGCGGG 717 consensus_6371#1 CGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGG 590 consensus_6371#2 CGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGG 536 ********************************* ***** ******************** consensus_6371#0 TCAATTCATGGTGATCCTTTGTTTGGCATTAT---ATAAAAATCGTCACTGAGGTGGCCA 774 consensus_6371#1 TCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCA 650 consensus_6371#2 TCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCA 596 ******************************** ************************* consensus_6371#0 TAAATATCTATCTAATCTAAAC-GAAAGCCCCAATCAAAAATCCAATAGG---------- 823 consensus_6371#1 TAAATATCTATCTAATCTAAACCGGACGCGTGGGT------------------------- 685 consensus_6371#2 TAAATATCTATCTAATCTAAAC-GAAAGCCCCAATCAAAATAAACGCACGCTGCACGTGA 655 ********************** * * ** * consensus_6371#0 ------ consensus_6371#1 ------ consensus_6371#2 TTGCGG 661 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||