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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 823 fasta sequence
[GCCTTTTTTTTTTTTTTTTTTTGAGATATGGTAACTGCTGTGTTAACGATAAAACAGG-TTTATTGCTTTGCCTTTGTCTTGGGTGGTGAAAGAAGTCCTTAGTCCTTCTGTGCGTTGGTTGCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAAATCCAATAGG]
[+] EMBL CNS091N4 [GCCTTTTTTTTTTTTTTTTTTTGAGATATGGTAACTGCTGTGTTAACGATAAAACAGG TTTATTGCTTTGCCTTTGTCTTGGGTGGTGAAAGAAGTCCTTAGTCCTTCTGTGCGTTGGTTGCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCC ]
[-] EMBL BX623631 [ AGGTTTTATTGCTTTGCCTTNGTCTTGGGTGGTGAAAGAAGTCCTTAGTCNTTCTGTGCGTTGGTTGCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTAGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTTTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGTCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCG ]
[-] EMBL CNS091N3 [ TCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAAATCCAATAGG]
consensusID : consensus_6371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACCGGACGCGTGGGT]
[-] EMBL BM613688 [TGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGGGAGATGGTGTTATCGTACAGCACGCGATACTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCACTCGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACCGGACGCGTGGGT]
consensusID : consensus_6371#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[TGGTGTTATCGTACAGCACGCGATACTTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCCATTCGGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAATAAACGCACGCTGCACGTGATTGCGG]
[-] EMBL BM614303 [TGGTGTTATCGTACAGCACGCGATACTTTCGTCGGCAGGAAGTAAAAGTTGACGATTTGGGCCGGCGGCCACACGACCCCATTCGGGCCGTGTACAGGCGGATGAACTTGTCCCGTATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAACAGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGCCCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACACCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGCTCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACCGATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTCCGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGGTCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCATAAATATCTATCTAATCTAAACGAAAGCCCCAATCAAAATAAACGCACGCTGCACGTGATTGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6371#0 GCCTTTTTTTTTTTTTTTTTTTGAGATATGGTAACTGCTGTGTTAACGATAAAACAGGTT 60
consensus_6371#1 ------------------------------------------------------------
consensus_6371#2 ------------------------------------------------------------
consensus_6371#0 TATTGCTTTGCCTTTGTCTTGGGTGGTGAAAGAAGTCCTTAGTCCTTCTGTGCGTTGGTT 120
consensus_6371#1 ------------------------------------------------------------
consensus_6371#2 ------------------------------------------------------------
consensus_6371#0 GCGGCGGTGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGG 180
consensus_6371#1 -------TGGCGCCACTCTCGTCATTAATAACGTAGCTCGTGTACACGTCGTACCCGAGG 53
consensus_6371#2 ------------------------------------------------------------
consensus_6371#0 GAGATGGTGTTATCGTACAGCACGCGATACTT-CGTCGGCAGGAAGTAAAAGTTGACGAT 239
consensus_6371#1 GAGATGGTGTTATCGTACAGCACGCGATACTT-CGTCGGCAGGAAGTAAAAGTTGACGAT 112
consensus_6371#2 ----TGGTGTTATCGTACAGCACGCGATACTTTCGTCGGCAGGAAGTAAAAGTTGACGAT 56
**************************** ***************************
consensus_6371#0 TTGGGCCGGCGGCCACACGACCC-ACTCGG-CCGTGTACAGGCGGATGAACTTGTCCCGT 297
consensus_6371#1 TTGGGCCGGCGGCCACACGACCC-ACTCGG-CCGTGTACAGGCGGATGAACTTGTCCCGT 170
consensus_6371#2 TTGGGCCGGCGGCCACACGACCCCATTCGGGCCGTGTACAGGCGGATGAACTTGTCCCGT 116
*********************** * **** *****************************
consensus_6371#0 ATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAAC 357
consensus_6371#1 ATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAAC 230
consensus_6371#2 ATCTCGCCGCGCATTTCCTCCCACGAGGAGCGCTTCAGCACTGCCAGCGTGGCGAAGAAC 176
************************************************************
consensus_6371#0 AGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGC 417
consensus_6371#1 AGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGC 290
consensus_6371#2 AGGAATATCACAATCGGCGAAGCGACCGTTTGATCGATCAGCACCTTCTTCAGGACCAGC 236
************************************************************
consensus_6371#0 CCAATCGTGCGGCCGGGGAACCGGCGATCCATAAAGTTGTACCACCCGTGGCAGAACACA 477
consensus_6371#1 CCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACA 350
consensus_6371#2 CCAATCGTGCGGCCGGGGAACCGGCGATCCATGAAGTTGTACCACCCGTGGCAGAACACA 296
******************************** ***************************
consensus_6371#0 CCGACCGTCATGCCGGAAATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGC 537
consensus_6371#1 CCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGC 410
consensus_6371#2 CCGACCGTCATGCCGGAGATGGACATGAAGCGGGTCCGCCGGCGGTCCCACGCCGCCAGC 356
***************** ******************************************
consensus_6371#0 TCGCCACTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGATAGGCTGACC 597
consensus_6371#1 TCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACC 470
consensus_6371#2 TCGCCGCTGTAGATCTCATAGTGCTGCTCGATTATATCACCCACCCCGGAGAGGCTGACC 416
***** ******************************************** *********
consensus_6371#0 GATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTC 657
consensus_6371#1 GATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTC 530
consensus_6371#2 GATATCGCGACATTCGTGAGCAGTAGGTACTTCTTGCTGAATGCTGTCTTGGTCGCTGTC 476
************************************************************
consensus_6371#0 CGGAACCACTTCGCGAGCGCAATCATTCCGTGGGCACACGCGCGTACAATACTGAGCGGG 717
consensus_6371#1 CGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGG 590
consensus_6371#2 CGGAACCACTTCGCGAGCGCAATCATTCCGTGGCCACACACGCGTACAATACTGAGCGGG 536
********************************* ***** ********************
consensus_6371#0 TCAATTCATGGTGATCCTTTGTTTGGCATTAT---ATAAAAATCGTCACTGAGGTGGCCA 774
consensus_6371#1 TCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCA 650
consensus_6371#2 TCAATTCATGGTGATCCTTTGTTTGGCATTATTATATAAAAATCGTCACTGAGGTGGCCA 596
******************************** *************************
consensus_6371#0 TAAATATCTATCTAATCTAAAC-GAAAGCCCCAATCAAAAATCCAATAGG---------- 823
consensus_6371#1 TAAATATCTATCTAATCTAAACCGGACGCGTGGGT------------------------- 685
consensus_6371#2 TAAATATCTATCTAATCTAAAC-GAAAGCCCCAATCAAAATAAACGCACGCTGCACGTGA 655
********************** * * ** *
consensus_6371#0 ------
consensus_6371#1 ------
consensus_6371#2 TTGCGG 661
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||