|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1363 fasta sequence
[TGTCGCTGTACACCGCCATGTCGGACATACTGTGGAACATTGGGGAGAAGGCGAAAGCGATCGTCGCGCTGCCGGGGGAAGCGTCCCACATCCCGCACAGCCACGTCTACTTTCAGGACAACGTGACGGAGAAGCTGTACTTCTTCGAGTTTACCAAGCTGGACGATCTGCAAATCTTTATGAAGCGCTATCTACCATACTTTACAGAAAACCCTGGCCCAGGAACGCTGCTCTATCTGTACAGTGCCGTGCTGACGCGTGGCATGGAGAACATGCGCAACGATTTGGACGCACCGAAGGGTGCGCATCTGATGGGACCGCACGAGGAAGGCTCGCTGAATGTGATCACGCTGCTGCTGACGGGGCGTGCTACACCGTACCTACACAACGGTGTCGTGTACGTCGGTGATGAGGATCTTTATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGGGCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGACGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAACAGTGCGAGCGAGAGCGACAGGAGCAACTGGTTGATGATGGAATGTCCCCCTACGCGCACGTCTGTGCGT----GTGTGTGTATGAGTGTGGGCGTGTGTGTNTGTATGAAGATTCACCCTGAATTAGAGCGCGCAATAGTAACTGTATTGCAATATGTTTCCCTTGCCTAGCACCCG-CCTAGGCACATCCGGAAGCGATGTAGCGATGGTGTCGTGTGTTGATTATGAGCAATTAATNTATGCGTGTGTGTGTGTTTTGCTTTCGTTTTCAGTTCTACATTGTTTTACGCGCTACCTGGGAGGAGGTCAAGCTCCCTTCCTGGCTCCTGCAAAAGGCTCGGATCGGGATGCAAATTGCCCTGGAAGGAAACTGATCGCTTGGTTTTTTTTGTACTTGGGAAAACAGCCGGAAACAAATAACAGCTTGTAGTTACACTTACTAACAACTCCCCCGAACAAGCCCCACTGCCCGCACGGCGGGTTGGCTCATGCTTAATAATTCCGAATAAAACGG]
[+] EMBL BX612448 [TGTCGCTGTACACCGCCATGTCGGACATACTGTGGAACATTGGGGAGAAGGCGAAAGCGATCGTCGCGCTGCCGGGGGAAGCGTCCCACATCCCGCACAGCCACGTCTACTTTCAGGACAACGTGACGGAGAAGCTGTACTTCTTCGAGTTTACCAAGCTGGACGATCTGCAAATCTTTATGAAGCGCTATCTACCATACTTTACAGAAAACCCTGGCCCAGGAACGCTGCTCTATCTGTACAGTGCCGTGCTGACGCGTGGCATGGAGAACATGCGCAACGATTTGGACGCACCGAAGGGTGCGCATCTGATGGGACCGCACGAGGAAGGCTCGCTGAATGTGATCACGCTGCTGCTGACGGGGCGTGCTACACCGTACCTACACAACGGTGTCGTGTACGTCGGTGATGAGGATCTTTATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGGGCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAATTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCCATGACCGTCGATAACCGC ]
[+] EMBL BX616575 [ ACACAACGGTGTCGTGTACGTCGGTGATGAGGATCATTATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGGGCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAACAGTGCGAGCGAGAGCGACAGGAGCGAC ]
[+] EMBL BX619746 [ GCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGGCCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGACGGGGATCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAGCGGCGCGAGCGAGAGCGACATGAGCATATGGTTGATGATGGAATGTCCCCCTACGCGCACGTCTGTGCGT GTGTGTGTATGAGTGTGGGCGTGTGTGTNTGTATGAAGATTCACCCTGAATTAGAGCGCGCAATAGTAACTGTATTGCAATATGTTTCCCTTGCCTAGCACCCG CCTAGGCACATCCGGAAGCGATGTAGCGATGGTGTCGTGTGTTGATTATGAGCAATTAATNTATGCGTGT ]
[+] EMBL BX613468 [ TACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACAACGGCGACCAGGACGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGCTCAACTTCTAAACAGTGCGAGCGTGAGCGACAGGAGCAACTGGTTAATGATGGAAAGTCCCCCGACGGGCACGTCTGTGCGTGTGCGTGTGTGTATGAGTGTGGGCGTGTGTGTTTGTATGAAGATTCACCCCAAATTAGAGCGCGCAATAGTGACTGTATTGCAATATGTTTCCCTTGCCTAGCACCCGCCCTAGGCACATCCGGAAGCGATGGAGCTATGGCGTCGTGTGTTGATTATGAGCAATTAATTTAAGCGTGTGTGTGTGTTTTGCTTTCGTTTTCAGTTCTACATTGTTTTACGCGCTACCTGGGAGGAGGTCAAGCTCCCTTCCTGGCTCCTGCAAAAGGCTCGGATCGGGATGCAAATTGCCCTGGAAGGAAACTGATCGCTTGGTTTTTTTTGTACTTGGGAAAACAGCCGGAAACAAATAACAGCTTGTAGTTACACTTACTAACAACTCCCCCGAACAAGCCCCACTGCCCGCACGGCGGGTTGGCTCATGCTTAATAATTCCGAATAAAACGG]
consensusID : consensus_6385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[CGAGTTATTCACGGCTCAAAACGCCGCCCACGCTTTTTGGTTAAGCTGCTGCTGCGGCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGGACAACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCTCGCCTCAAACTTCTAAACAGTGCGAGCGAGAGCGAACAGGAGCAACCTGGTTGATGATGGAATGTCCCCCTACGGGCACGTCTGTGCGATGTGCCGTATGTAGTGTGTACTGAGTGTGGGCCGTGTGTGTACCGTACTGAACGATTCACCCTGAATTAAAGCGCGCAANTAGTAACTGTAT]
[+] EMBL AL692413 [CGAGTTATTCACGGCTCAAAACGCCGCCCACGCTTTTTGGTTAAGCTGCTGCTGCGGCATTACGGCGTACTGTTCAACTCAAACCGCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCGCCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGGACAACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGACTCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCTCGCCTCAAACTTCTAAACAGTGCGAGCGAGAGCGAACAGGAGCAACCTGGTTGATGATGGAATGTCCCCCTACGGGCACGTCTGTGCGATGTGCCGTATGTAGTGTGTACTGAGTGTGGGCCGTGTGTGTACCGTACTGAACGATTCACCCTGAATTAAAGCGCGCAANTAGTAACTGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6385#0 TGTCGCTGTACACCGCCATGTCGGACATACTGTGGAACATTGGGGAGAAGGCGAAAGCGA 60
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 TCGTCGCGCTGCCGGGGGAAGCGTCCCACATCCCGCACAGCCACGTCTACTTTCAGGACA 120
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 ACGTGACGGAGAAGCTGTACTTCTTCGAGTTTACCAAGCTGGACGATCTGCAAATCTTTA 180
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 TGAAGCGCTATCTACCATACTTTACAGAAAACCCTGGCCCAGGAACGCTGCTCTATCTGT 240
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 ACAGTGCCGTGCTGACGCGTGGCATGGAGAACATGCGCAACGATTTGGACGCACCGAAGG 300
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 GTGCGCATCTGATGGGACCGCACGAGGAAGGCTCGCTGAATGTGATCACGCTGCTGCTGA 360
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 CGGGGCGTGCTACACCGTACCTACACAACGGTGTCGTGTACGTCGGTGATGAGGATCTTT 420
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 ATGCCGTGCCGCAGTTCGGAGTCCTGAGCCGTGGTGCAATCGGGCTGCTTGTTTGGGAGG 480
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 GCGAAAACGAAGCCATGCGCTCCGCCTCCCGCATGCCCGGTTCACGGCTCAAAACGCCGG 540
consensus_6385#1 ---------------------------------CGAGTTATTCACGGCTCAAAACGCCGC 27
* *******************
consensus_6385#0 CCACGCCGGTTTGGGTAAGCTGCTGCTGCGGCCATTACGGCGTACTGTTCAACTCAAACC 600
consensus_6385#1 CCACGCTT-TTTGGTTAAGCTGCTGCTGCGGC-ATTACGGCGTACTGTTCAACTCAAACC 85
****** ***** ***************** ***************************
consensus_6385#0 GCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCG 660
consensus_6385#1 GCGAGCTGCTGCGCAACTACCACGCCGAGAAGCGATTCGAGCTGCATTACTACACTTGCG 145
************************************************************
consensus_6385#0 CCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGGCGACA 720
consensus_6385#1 CCGGCTGTTACCTTTCGATGACCGTCGATAACCGCGGGCAGGACGAGGGCGGCGG-GACA 204
******************************************************* ****
consensus_6385#0 ACGGCGACCAGGACGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGAC 780
consensus_6385#1 ACGGCGACCAGGATGGGGACCGCAAGCGCGACGACATGGTCTCGACACCGCTGGAAAGAC 264
************* **********************************************
consensus_6385#0 TCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCCTCGC 840
consensus_6385#1 TCATACACACGAAATGGATGGACGCCAAGATCACGTACCATGGTGCCCTGCCGGCTCGCC 324
******************************************************* *
consensus_6385#0 TCAA-CTTCTAAACAGTGCGAGCGAGAGCGA-CAGGAGCAAC-TGGTTGATGATGGAATG 897
consensus_6385#1 TCAAACTTCTAAACAGTGCGAGCGAGAGCGAACAGGAGCAACCTGGTTGATGATGGAATG 384
**** ************************** ********** *****************
consensus_6385#0 TCCCCCTACGCGCACGTCTGTGCG-TGTG----------TGTGTA-TGAGTGTGGGC-GT 944
consensus_6385#1 TCCCCCTACGGGCACGTCTGTGCGATGTGCCGTATGTAGTGTGTACTGAGTGTGGGCCGT 444
********** ************* **** ****** *********** **
consensus_6385#0 GTGTGTNT-GTA-TGAA-GATTCACCCTGAATTAGAGCGCGCAAT-AGTAACTGTATTGC 1000
consensus_6385#1 GTGTGTACCGTACTGAACGATTCACCCTGAATTAAAGCGCGCAANTAGTAACTGTAT--- 501
****** *** **** **************** ********* ***********
consensus_6385#0 AATATGTTTCCCTTGCCTAGCACCCGCCTAGGCACATCCGGAAGCGATGTAGCGATGGTG 1060
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 TCGTGTGTTGATTATGAGCAATTAATNTATGCGTGTGTGTGTGTTTTGCTTTCGTTTTCA 1120
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 GTTCTACATTGTTTTACGCGCTACCTGGGAGGAGGTCAAGCTCCCTTCCTGGCTCCTGCA 1180
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 AAAGGCTCGGATCGGGATGCAAATTGCCCTGGAAGGAAACTGATCGCTTGGTTTTTTTTG 1240
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 TACTTGGGAAAACAGCCGGAAACAAATAACAGCTTGTAGTTACACTTACTAACAACTCCC 1300
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 CCGAACAAGCCCCACTGCCCGCACGGCGGGTTGGCTCATGCTTAATAATTCCGAATAAAA 1360
consensus_6385#1 ------------------------------------------------------------
consensus_6385#0 CGG 1363
consensus_6385#1 ---
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||