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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1013 fasta sequence
[GATCGCCCCGAGGCTNAAGGGGTAAAAGGAAGAAAAAAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTAAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGAATCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGGAAACGAGATATATACCGTGTTTGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGTAGTAGTGAGTTATAATCGAATTTTAATCTGGAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGAGGGGA-G-GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCTGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAAT-GCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCCTTCCGTTCTGTTCGAGGAAAAAAAAAAGAAGTCATTTTGGTGAATTAGCGCAGTATAAATAGATGCCACAGCCAAGGCGAGTTGAGGGGGTTTGAAACAATCGCGGTGGAAACGATAGTAGTACACCGTGGTGTATGTACTCCCTCT]
[+] EMBL AL934947 [GATCGCCCCGAGGCTNAAGGGGTAAAAGGAAGAAAAAAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTAAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGAATCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGGAAACGAGATATATACCGTGTTTGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGTAGTAGTGAGTTATAATCGAATTTTAATCTGAAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGAGGGGAGG GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATTTGCATCGCTCTGTAGGATTGATTGATTGGATGGTACCGATTAGTTTTGTCGCACATGTGTGGTCAAGAGGGTCGAAGCATAGAACGAACCAAGTTGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCT ]
[+] EMBL BM651433 [ ccGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGCAGTAGTGAGTTATAATCGAATTTTAATCTGGAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGA GGGA GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCTATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCCGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAAT GCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAA ]
[+] EMBL BX620471 [ TCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTGGTAGTACCGGTAGTAGTGAGTTATAATCGAATTTTAATCTGGAGAAAAGAAAAATTCGTACCTAAGCATGGTGTGAGGAGGGGA GCGGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCTGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCGTGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAATAGCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCCTTCCGTTCTG ]
[+] EMBL BM629856 [ cc G GGGAGACTGTTTTTGAAATGTTTTACTCACTCCTACTTCTATCTATAATCGTAAAACAATCATTCACGCCATAGCATTTTCCCTCGTAACAATTAATTTCATGTGCATCGCTCCGTAGAATTGATTGATTGGATGGTACCGATTAGTTGTGTCGCACATGTGTGGTGAAGAGGGTCGAAGCATAGAACGAACCAAGTCGCAGGTAATATTTGAGCGATGATAGTACTACACAGATGTACGGTGCGCGTGAGGAGTCTTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTGTTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCGTGCACGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAAT GCGTGATAGTATGGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCCTTCCGTTCTGTTCGAGGAAAAAAAAAAGAAGTCATTTTGGTGAATTAGCGCAGTATAAATAGATGCCACAGCCAAGGCGAGTTGAGGGGGTTTGAAACAATCGCGGTGGAAACGATAGTAGTACACCGTGGTGTATGTACTCCCTCT]
consensusID : consensus_6387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence
[GCAGAATCCCCACGNGTTAAGGGGTAAAAGGAAGAAANNAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTNNAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGANTCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGAAACGAGATATATACCGTGTTATGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTTGGTAGTACCGGTAGTAGTGAGTTATAATCGANNTTTTAACTCTGCACAGCANAAGAAAAATTCGTACCTAAGCATGGTGTGCAGGCAGGGGAGGGGGCAGCACTGTTTCGGAAATGTTTACTCACTCCTACTTCTATCTATCANATCGTCAAAACCAATCATTCACAGCCATAGNATTAAACCCTCGNTAACACATNNATATTCATTTAGCCTCGCTCTGTAGNGATTGATTCGATTGGATGGTACCGATTAGTTNTTGTCGCACATGTGTGGTCAAGAGGGTCGANAGCATAGAACGAACCAAGTTGCAGNGTAATATATGAGCCGATNGATAGTACTACAACAGATGTACGGATGCGCGATGAGGGAGGTACCTTTANTCCCCACGTCCATTAAACCTANATANNAGACACNATAGCAACCCAGTTCGGCANCTAAAAAGTCGCGTCACAGTTANCCCTCTTCATTTGNTTTAACGCAATTTATATCNACAGCAACGAGACGTGGTACGGCGCGTGACAGTGNCATAATGCAAAGTGTANCACACACA]
[+] EMBL AL694718 [GCAGAATCCCCACGNGTTAAGGGGTAAAAGGAAGAAANNAACGACTAATTTGGAAACGTAGTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTNNAGTTTCCATGCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGANTCACAGAATGTGTAGGGTGGGGCAAACAAAAGAGGGTCAGGAAACGAGATATATACCGTGTTATGGTTCAGGGCCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTTGGTAGTACCGGTAGTAGTGAGTTATAATCGANNTTTTAACTCTGCACAGCANAAGAAAAATTCGTACCTAAGCATGGTGTGCAGGCAGGGGAGGGGGCAGCACTGTTTCGGAAATGTTTACTCACTCCTACTTCTATCTATCANATCGTCAAAACCAATCATTCACAGCCATAGNATTAAACCCTCGNTAACACATNNATATTCATTTAGCCTCGCTCTGTAGNGATTGATTCGATTGGATGGTACCGATTAGTTNTTGTCGCACATGTGTGGTCAAGAGGGTCGANAGCATAGAACGAACCAAGTTGCAGNGTAATATATGAGCCGATNGATAGTACTACAACAGATGTACGGATGCGCGATGAGGGAGGTACCTTTANTCCCCACGTCCATTAAACCTANATANNAGACACNATAGCAACCCAGTTCGGCANCTAAAAAGTCGCGTCACAGTTANCCCTCTTCATTTGNTTTAACGCAATTTATATCNACAGCAACGAGACGTGGTACGGCGCGTGACAGTGNCATAATGCAAAGTGTANCACACACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6387#0 --GATCGCCCCGAGGCTNAAGGGGTAAAAGGAAGAAAAAAACGACTAATTTGGAAACGTA 58
consensus_6387#1 GCAGAATCCCCACGNGTTAAGGGGTAAAAGGAAGAAANNAACGACTAATTTGGAAACGTA 60
**** * * ******************* *********************
consensus_6387#0 GTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTAA-GTTTCCAT 117
consensus_6387#1 GTGTAGCAAGGAATAGCTAAGAAACGAGTGTTCTTTCCCTTTTCTTCGTNNAGTTTCCAT 120
************************************************* ********
consensus_6387#0 GCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGAATCACAGAATGTGTA 177
consensus_6387#1 GCAGTTAGTTACACTATCCTTTTTGCACGATCACCGACAGCGTGANTCACAGAATGTGTA 180
********************************************* **************
consensus_6387#0 GGGTGGGGCAAACAAAAGAGGGTCAGGGAAACGAGATATATACCGTGTT-TGGTTCAGGG 236
consensus_6387#1 GGGTGGGGCAAACAAAAGAGGGTCAGG-AAACGAGATATATACCGTGTTATGGTTCAGGG 239
*************************** ********************* **********
consensus_6387#0 CCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTT-GGTAGTACCG 295
consensus_6387#1 CCGAGCATATCTTCCAACTTATGCCGTGTTTACGTTTTTACCCGTATTTTGGTAGTACCG 299
************************************************* **********
consensus_6387#0 GTAGTAGTGAGTTATAATCGAATTTTAA--TCTGGAGA---AAAGAAAAATTCGTACCTA 350
consensus_6387#1 GTAGTAGTGAGTTATAATCGANNTTTTAACTCTGCACAGCANAAGAAAAATTCGTACCTA 359
********************* *** * **** * * ******************
consensus_6387#0 AGCATGGTGTG-----AGGAGGGGAGGGGAGACTGTTTTTGAAATGTTTTACTCACTCCT 405
consensus_6387#1 AGCATGGTGTGCAGGCAGGGGAGGGGGCAGCACTGTTTCGGAAATGTTT-ACTCACTCCT 418
*********** *** * ** ** ******* ********* **********
consensus_6387#0 ACTTCTATCTAT--AATCGTAAAA--CAATCATTCAC-GCCATAGCATTT--TCCCTCGT 458
consensus_6387#1 ACTTCTATCTATCANATCGTCAAAACCAATCATTCACAGCCATAGNATTAAACCCTCGNT 478
************ ***** *** *********** ******* *** ** *
consensus_6387#0 AACA-ATTAAT-TTCATGT-GCATCGCTCTGTAGA-ATTGATT-GATTGGATGGTACCGA 513
consensus_6387#1 AACACATNNATATTCATTTAGCCTCGCTCTGTAGNGATTGATTCGATTGGATGGTACCGA 538
**** ** ** ***** * ** *********** ******* ****************
consensus_6387#0 TTAGTTGT-GTCGCACATGTGTGGTGAAGAGGGTCGAA-GCATAGAACGAACCAAGTCGC 571
consensus_6387#1 TTAGTTNTTGTCGCACATGTGTGGTCAAGAGGGTCGANAGCATAGAACGAACCAAGTTGC 598
****** * **************** *********** ****************** **
consensus_6387#0 AGG-TAATATTTGAGCGA--TGATAGTACTACA-CAGATGTACGGTGCGCGTGAGGAGTC 627
consensus_6387#1 AGNGTAATATATGAGCCGATNGATAGTACTACAACAGATGTACGG-ATGCGCGATGAGGG 657
** ****** ***** ************ *********** *** ** ***
consensus_6387#0 TTTTCCGCTGCTCCTTAACCTTTTTTTCATGCAACCAGTTCGCACTAAAGTCGAGTTTTG 687
consensus_6387#1 AGGTACCTTTANTCCCCACGTCCATTAAACCTANATANNAGACACNATAGC--AACCCAG 715
* * * * ** * ** * * * *** * ** * *
consensus_6387#0 TTTTCCTCTCGTTGCTTTAAGCATTATTTCACGCACCGAGCCATGGTACGGCGCG-TGCA 746
consensus_6387#1 TTCGGCANCTAAAAAGTCGCGTCACAGTTANCCCTCTTCATT-TGNTTTAACGCAATTTA 774
** * * * * ** * * * ** * *** * *
consensus_6387#0 CGTGCTACTGCAGTGTGTGCGACACAGGGAATTTGTTAGTTAAGCAATGCGTGATAGTAT 806
consensus_6387#1 TAT-CNACAGCAACGAG-ACGTGGTACGGCGCGTGACAGTGNCATAATGC---AAAGTGT 829
* * ** *** * * ** * ** ** *** ***** * *** *
consensus_6387#0 GGTGGGTATAACTGCGCAACGAACAGTGGCGATTTTGGGACTATCCAAAACGAAGCATCC 866
consensus_6387#1 ANCACACACA-------------------------------------------------- 839
* *
consensus_6387#0 TTCCGTTCTGTTCGAGGAAAAAAAAAAGAAGTCATTTTGGTGAATTAGCGCAGTATAAAT 926
consensus_6387#1 ------------------------------------------------------------
consensus_6387#0 AGATGCCACAGCCAAGGCGAGTTGAGGGGGTTTGAAACAATCGCGGTGGAAACGATAGTA 986
consensus_6387#1 ------------------------------------------------------------
consensus_6387#0 GTACACCGTGGTGTATGTACTCCCTCT 1013
consensus_6387#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||