cluster # 6390

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Anopheles gambiae
cluster # 6390 cluster # 6390 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6390#0 length = 701 sequences # 1

consensus_6390#1 length = 698 sequences # 3
consensus_6390#2 length = 180 sequences # 1

consensusID : consensus_6390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence

                              [CCGCCCACGCGTCCGGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCATGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAAGTGGTGGCAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTCATGATCAAGCGCGAGCTGATGAAGGACGAAAATC]

[+] EMBL BM599884             [CCGCCCACGCGTCCGGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCATGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAAGTGGTGGCAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTCATGATCAAGCGCGAGCTGATGAAGGACGAAAATC]




>consensus_6390#0
CCGCCCACGCGTCCGGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCC
GGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTG
AAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTC
TCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTG
AAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACC
GTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATC
AAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATT
GGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGC
CGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAAC
TGCTACGTGCTGGTGCATGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAG
TGCGTACGGAAAGTGGTGGCAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAA
AGCCCTCATGATCAAGCGCGAGCTGATGAAGGACGAAAATC

consensusID : consensus_6390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 698
fasta sequence

                              [CCGCGCACGTTTTGTTGTGCTGCCCGCACTTTCCGTACTATTTCGTGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCAGGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAGGTGGTGGGAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTC]

[+] EMBL BM592977             [CCGCGCACGTTTTGTTGTGCTGCCCGCACTTTCCGTACTATTTCGTGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCGCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCAGGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAGGTGGTGGGAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTC]
[+] EMBL BX604546             [                     GCTCACACTTTCCGTACTATTTTGTGAATAAAAGTGATAATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATT  CTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGC                                                                                                                            ]
[+] EMBL BM613849             [                                        ccgCGTGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGCACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATTATCCTGAAGGCGCGCGATCTTATCAAACTGCTCTCCCGGTCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAG                                                                                                                                                                                                                               ]




>consensus_6390#1
CCGCGCACGTTTTGTTGTGCTGCCCGCACTTTCCGTACTATTTCGTGAATAAAAGTGATA
AATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTT
CGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAA
CCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAA
GTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGC
GGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCC
CTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGA
ACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCT
GGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTG
TACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCAGGGTGCCACCGT
CTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAGGTGGTGGGAAGAGACGA
TGAAAAACATCCACCCGATCTACAACATCAAAGCCCTC

consensusID : consensus_6390#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [CACACTTTCCGTACTATTTTGTGAATAAAAGTGATAATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGG]

[+] EMBL BX618583             [CACACTTTCCGTACTATTTTGTGAATAAAAGTGATAATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGG]




>consensus_6390#2
CACACTTTCCGTACTATTTTGTGAATAAAAGTGATAATTTACCATGAGCGACTCGGAATC
CGATGCCGGCGATCAGACCGCAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCT
CGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6390#1      CCGCGCACGTTTTGTTGTGCTGCCCGCACTTTCCGTAC-TATTTCGTGAATAAAAGTGAT 59
consensus_6390#2      ------------------------CACACTTTCCGTAC-TATTTTGTGAATAAAAGTGAT 35
consensus_6390#0      --------------------------------CCGCCCACGCGTCCGGAATAAAAGTGAT 28
                                                      ***  *     *   *************

consensus_6390#1      AAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATT 119
consensus_6390#2      AATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAG------------ 83
consensus_6390#0      AAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATT 88
                      ** *********************************************            

consensus_6390#1      TCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACA 179
consensus_6390#2      --------------------------------------------------CCAGAAGACA 93
consensus_6390#0      TCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACA 148
                                                                        **********

consensus_6390#1      ACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAA 239
consensus_6390#2      ACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAA 153
consensus_6390#0      ACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAA 208
                      ************************************************************

consensus_6390#1      AGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAG 299
consensus_6390#2      AGTACATCAAAGAATGTTGGCCCCTGG--------------------------------- 180
consensus_6390#0      AGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAG 268
                      ***************************                                 

consensus_6390#1      CGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACC 359
consensus_6390#2      ------------------------------------------------------------
consensus_6390#0      CGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACC 328
                                                                                  

consensus_6390#1      CCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCG 419
consensus_6390#2      ------------------------------------------------------------
consensus_6390#0      CCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCG 388
                                                                                  

consensus_6390#1      AACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACC 479
consensus_6390#2      ------------------------------------------------------------
consensus_6390#0      AACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACC 448
                                                                                  

consensus_6390#1      TGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGT 539
consensus_6390#2      ------------------------------------------------------------
consensus_6390#0      TGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGT 508
                                                                                  

consensus_6390#1      GTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCAGGGTGCCACCG 599
consensus_6390#2      ------------------------------------------------------------
consensus_6390#0      GTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCATGGTGCCACCG 568
                                                                                  

consensus_6390#1      TCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAGGTGGTGGGAAGAGACG 659
consensus_6390#2      ------------------------------------------------------------
consensus_6390#0      TCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAAGTGGTGGCAAGAGACG 628
                                                                                  

consensus_6390#1      ATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTC--------------------- 698
consensus_6390#2      ------------------------------------------------------------
consensus_6390#0      ATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTCATGATCAAGCGCGAGCTGATG 688
                                                                                  

consensus_6390#1      -------------
consensus_6390#2      -------------
consensus_6390#0      AAGGACGAAAATC 701