These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [CCGCCCACGCGTCCGGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCATGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAAGTGGTGGCAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTCATGATCAAGCGCGAGCTGATGAAGGACGAAAATC] [+] EMBL BM599884 [CCGCCCACGCGTCCGGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCATGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAAGTGGTGGCAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTCATGATCAAGCGCGAGCTGATGAAGGACGAAAATC] consensusID : consensus_6390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 698 fasta sequence [CCGCGCACGTTTTGTTGTGCTGCCCGCACTTTCCGTACTATTTCGTGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCAGGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAGGTGGTGGGAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTC] [+] EMBL BM592977 [CCGCGCACGTTTTGTTGTGCTGCCCGCACTTTCCGTACTATTTCGTGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCGCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCAGGGTGCCACCGTCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAGGTGGTGGGAAGAGACGATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTC] [+] EMBL BX604546 [ GCTCACACTTTCCGTACTATTTTGTGAATAAAAGTGATAATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATT CTGCGACATCATCAAGGTGAAGAACCTGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGTGTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGC ] [+] EMBL BM613849 [ ccgCGTGAATAAAAGTGATAAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATTTCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGCACACACCACATCAAAGCGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACCCCTACATTATCCTGAAGGCGCGCGATCTTATCAAACTGCTCTCCCGGTCGGTGCCCTTCGAACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAG ] consensusID : consensus_6390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [CACACTTTCCGTACTATTTTGTGAATAAAAGTGATAATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGG] [+] EMBL BX618583 [CACACTTTCCGTACTATTTTGTGAATAAAAGTGATAATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGCCAGAAGACAACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAAAGTACATCAAAGAATGTTGGCCCCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6390#1 CCGCGCACGTTTTGTTGTGCTGCCCGCACTTTCCGTAC-TATTTCGTGAATAAAAGTGAT 59 consensus_6390#2 ------------------------CACACTTTCCGTAC-TATTTTGTGAATAAAAGTGAT 35 consensus_6390#0 --------------------------------CCGCCCACGCGTCCGGAATAAAAGTGAT 28 *** * * ************* consensus_6390#1 AAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATT 119 consensus_6390#2 AATTTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAG------------ 83 consensus_6390#0 AAATTACCATGAGCGACTCGGAATCCGATGCCGGCGATCAGACCGCAGGTATTGAGCATT 88 ** ********************************************* consensus_6390#1 TCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACA 179 consensus_6390#2 --------------------------------------------------CCAGAAGACA 93 consensus_6390#0 TCGATGGGCCGGTGGAAAATGCGTGGTTGTTGAAAATTCCCGAATTCAAGCCAGAAGACA 148 ********** consensus_6390#1 ACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAA 239 consensus_6390#2 ACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAA 153 consensus_6390#0 ACCCCAACGGGCTGCTGGAGGAGAGCTCGTTCTCCTGCCTGTTTCCAAAGTATCGCGAAA 208 ************************************************************ consensus_6390#1 AGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAG 299 consensus_6390#2 AGTACATCAAAGAATGTTGGCCCCTGG--------------------------------- 180 consensus_6390#0 AGTACATCAAAGAATGTTGGCCCCTGGTCGTGAAGGCACTCGGTACACACCACATCAAAG 268 *************************** consensus_6390#1 CGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACC 359 consensus_6390#2 ------------------------------------------------------------ consensus_6390#0 CGGACCTGGACCTCATCTTGGGCAACATGACCGTGCGAACCACGCGCAAAACGTGGGACC 328 consensus_6390#1 CCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCG 419 consensus_6390#2 ------------------------------------------------------------ consensus_6390#0 CCTACATCATCCTGAAGGCGCGCGATCTCATCAAACTGCTCTCCCGATCGGTGCCCTTCG 388 consensus_6390#1 AACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACC 479 consensus_6390#2 ------------------------------------------------------------ consensus_6390#0 AACAGGCGGTCAAGGTGCTGGAGGATGAGATTGGCTGCGACATCATCAAGGTGAAGAACC 448 consensus_6390#1 TGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGT 539 consensus_6390#2 ------------------------------------------------------------ consensus_6390#0 TGGTCGCGAACAAGGAAAAGTTTGTCAAACGCCGCAGCCGACTGATTGGTCCGAACGGGT 508 consensus_6390#1 GTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCAGGGTGCCACCG 599 consensus_6390#2 ------------------------------------------------------------ consensus_6390#0 GTACGCTAAAGTCGTTGGAGCTGCTTACGAACTGCTACGTGCTGGTGCATGGTGCCACCG 568 consensus_6390#1 TCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAGGTGGTGGGAAGAGACG 659 consensus_6390#2 ------------------------------------------------------------ consensus_6390#0 TCTCGGCGATTGGACCGTACAAGGGCCTCCAGTGCGTACGGAAAGTGGTGGCAAGAGACG 628 consensus_6390#1 ATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTC--------------------- 698 consensus_6390#2 ------------------------------------------------------------ consensus_6390#0 ATGAAAAACATCCACCCGATCTACAACATCAAAGCCCTCATGATCAAGCGCGAGCTGATG 688 consensus_6390#1 ------------- consensus_6390#2 ------------- consensus_6390#0 AAGGACGAAAATC 701 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||