These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [GAATCGGCCCGAGGTGACTGCAAAGCTCTATGTCGANTCTCGTGGTAGGAACACGGAAAAGTATCATTGCAATCTAACAATTACGCTGGGCTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGCTACTGTAACACCGTGGTAACGTATTTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAATGAGGCAACGAAGCAGAAAAACATTGAACGGGTGAAAGAGACCAAAGTGCTCGGATGGCGGAAAAGCGAAGGGAGGCAGAATCGGCCATTTCCCTGATGGGTGCATTGTTTGAGCGCATTCGCAAAGACGAACTGAAACGGCAAGGTTGATTGTCGTGTCTGCATTGTATGGCAAATTTTCGGACGCTGAAAACGTGTCATTAGAANAGGCAGACGATATGGGTAANGTGCACCAGAATCGCTAGTTGATTGATGTTCGAATTCCTTTGACAGNGTATGGGTNGAAAGATTTCGGCAATTGACTTGGATNCGGTCATAAGCANGAGGCGAATTGGCCCGGGAATCTATGATCAATGGCTAGGTAAGGAAAGN] [+] EMBL BX467266 [GAATCGGCCCGAGGTGACTGCAAAGCTCTATGTCGANTCTCGTGGTAGGAACACGGAAAAGTATCATTGCAATCTAACAATTACGCTGGGCTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGCTACTGTAACACCGTGGTAACGTATTTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAATGAGGCAACGAAGCAGAAAAACATTGAACGGGTGAAAGAGACCAAAGTGCTCGGATGGCGGAAAAGCGAAGGGAGGCAGAATCGGCCATTTCCCTGATGGGTGCATTGTTTGAGCGCATTCGCAAAGACGAACTGAAACGGCAAGGTTGATTGTCGTGTCTGCATTGTATGGCAAATTTTCGGACGCTGAAAACGTGTCATTAGAANAGGCAGACGATATGGGTAANGTGCACCAGAATCGCTAGTTGATTGATGTTCGAATTCCTTTGACAGNGTATGGGTNGAAAGATTTCGGCAATTGACTTGGATNCGGTCATAAGCANGAGGCGAATTGGCCCGGGAATCTATGATCAATGGCTAGGTAAGGAAAGN] consensusID : consensus_6392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [CCGGTTGATTGCGGTGCAGGCAATGGGCCAGTGTTGGGTGCGAAGGGCTCACGAAACCTAACCAATAGAATATTCCTTACCGGTGGAACAACGTTCCATTTTCGACCGAACGCTATCATACCAGGATTGAGCGGGACTATGGCTATTCAGCTCGATAAGAACACTTTGGGGTATCTAACGTATAATGCTGGCCTGCAAAGCTCTATGTCGACTGTCGTGGAAAGGAACACGGAAAAGTATCATTGCAATCTAACAATTACGCTGGGTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGTACGTCCCTTTTATTAACCTTTGGCACTATTCTACTGAACACATCAAAAATGTGTGTGTTTTTTTAATATTTCCACTCTAGGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGCTACTGTAACACCGCTGGTAACGTATTTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAATGAGGCAACGAAGCA] [+] EMBL BM636748 [CCGGTTGATTGCGGTGCAGGCAATGGGCCAGTGTTGGGTGCGAAGGGCTCACGAAACCTAACCAATAGAATATTCCTTACCGGTGGAACAACGTTCCATTTTCGACCGAACGCTATCATACCAGGATTGAGCGGGACTATGGCTATTCAGCTCGATAAGAACACTTTGGGGTATCTAACGTATAATGCTGGCCTGCAAAGCTCTATGTCGACTGTCGTGGAAAGGAACACGGAAAAGTATCATTGCAATCTAACAATTACGCTGGGTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGTACGTCCCTTTTATTAACCTTTGGCACTATTCTACTGAACACATCAAAAATGTGTGTGTTTTTTTAATATTTCCACTCTAGGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGCTACTGTAACACCGCTGGTAACGTATTTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAATGAGGCAACGAAGCA] consensusID : consensus_6392#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [ATCCCCCGAGGTTATCTAACAATTACGCTGGGTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGCTACTGTAACACCGTGGTAACGTATTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAATGAGGCAACGAAGCAGAAAAACATTGAACGGGTGAAAGAGACCAACAGTGCTCGGATGGCGGAAAAGCGAAGGGAGGCAGAATCGGCCATTTCCCTGATGGGTGCATTGTTTGAGCGCATTCGCAAAGACGAACTGAAACGGCAAGGTTNTGATTGTCGTGTCTGCATTGTATGGCAAATTTTCGGACGCTGAAACACGTGTCACTTACGAAGAGGCCANNACGATATGGGTTTCGTGCACCAGAATCCGCTCANCTGNTCTGCATGTTCGAATTCCTTTGCCACGTGTGGTGAAAGATTCGCAATTGACTTG] [+] EMBL AL694737 [ATCCCCCGAGGTTATCTAACAATTACGCTGGGTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGCTACTGTAACACCGTGGTAACGTATTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAATGAGGCAACGAAGCAGAAAAACATTGAACGGGTGAAAGAGACCAACAGTGCTCGGATGGCGGAAAAGCGAAGGGAGGCAGAATCGGCCATTTCCCTGATGGGTGCATTGTTTGAGCGCATTCGCAAAGACGAACTGAAACGGCAAGGTTNTGATTGTCGTGTCTGCATTGTATGGCAAATTTTCGGACGCTGAAACACGTGTCACTTACGAAGAGGCCANNACGATATGGGTTTCGTGCACCAGAATCCGCTCANCTGNTCTGCATGTTCGAATTCCTTTGCCACGTGTGGTGAAAGATTCGCAATTGACTTG] consensusID : consensus_6392#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 424 fasta sequence [ATTTGAGCCCGCTAAGAATTTTACTTTCGTTGTAGCTATGGCTATTCAGCTCGATAAGAACACTTTGGGGTATCTAACGTATAATGCTGGCCTGCAAAGCTCTATGTCGACTGTCGTGGAAAGGAACAC-GGAAAAGTATCATTGCAATCTAACAATTACGCTGGGTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTTATACCCGC] [+] EMBL BX602773 [ATTTGAGCCCGCTAAGAATTTTACTTTCGTTGTAGCTATGGCTATTCAGCTCGATAAGAACACTTTGGGGTATCTAACGTATAATGCTGGCCTGCAAAGCTCTATGTCGACTGTCGTGGAAAGGAACAC GGAAAAGTATCATTGCAATCTAACAATTACGCTGGGTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTTATACCCGC] [+] EMBL BX617143 [ TGGGGTATCTAACGTATAATGCTGGCCTGCAAAGCTCTATGTCGACTGTCGTGGAAAGGAACACGGGAAAAGTATCATTGCAATCTAACAATTACGCTGGGTATTCCTCACTGCTATATAGCTGCCGCTTACACGAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGGCTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGACCGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACCTTTGCGAAGAAA TTATACCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6392#1 CCGGTTGATTGCGGTGCAGGCAATGGGCCAGTGTTGGGTGCGAAGGGCTCACGAAACCTA 60 consensus_6392#3 ------------------------------------------------------------ consensus_6392#0 ------------------------------------------------------------ consensus_6392#2 ------------------------------------------------------------ consensus_6392#1 ACCAATAGAATATTCCTTACCGGTGGAACAACGTTCCATTTTCGACCGAACGCTATCATA 120 consensus_6392#3 -------------------------------------ATTTGAGCCCGCTAAGAATTTTA 23 consensus_6392#0 ------------------------------------------------------------ consensus_6392#2 ------------------------------------------------------------ consensus_6392#1 CCAGGATTGAGCGGGACTATGGCTATTCAGCTCGATAAGAACACTTTGGGGTATCTAACG 180 consensus_6392#3 CT----TTCGTTGTAGCTATGGCTATTCAGCTCGATAAGAACACTTTGGGGTATCTAACG 79 consensus_6392#0 -------------------------------------------------------GAATC 5 consensus_6392#2 ------------------------------------------------------------ consensus_6392#1 TATAATGCTGGCCTGCAAAGCTCTATGTCGACTGTCGTGGAAAGGAACACGGAAAAGTAT 240 consensus_6392#3 TATAATGCTGGCCTGCAAAGCTCTATGTCGACTGTCGTGGAAAGGAACACGGAAAAGTAT 139 consensus_6392#0 GGCCCGAGGTGACTGCAAAGCTCTATGTCGANTCTCGTGGTA-GGAACACGGAAAAGTAT 64 consensus_6392#2 ------------------------------------------------------ATCCCC 6 * consensus_6392#1 CATTGCAATCTAACAATTACGCTGGG-TATTCCTCACTGCTATATAGCTGCCGCTTACAC 299 consensus_6392#3 CATTGCAATCTAACAATTACGCTGGG-TATTCCTCACTGCTATATAGCTGCCGCTTACAC 198 consensus_6392#0 CATTGCAATCTAACAATTACGCTGGGCTATTCCTCACTGCTATATAGCTGCCGCTTACAC 124 consensus_6392#2 CGAGGTTATCTAACAATTACGCTGGG-TATTCCTCACTGCTATATAGCTGCCGCTTACAC 65 * * ******************* ********************************* consensus_6392#1 GAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGG 359 consensus_6392#3 GAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGG 258 consensus_6392#0 GAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGG 184 consensus_6392#2 GAGAAAACTTTTAGAACAAGGCCTAAAGCTGAGAGTGGCACTAAAAGGTGGAACATTTGG 125 ************************************************************ consensus_6392#1 CTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGAC 419 consensus_6392#3 CTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGAC 318 consensus_6392#0 CTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGAC 244 consensus_6392#2 CTTCTTGTCTGAATGTGGCGCAGAAAAGAAAGTATCTAAGTACAGTTCGGTATCGGCGAC 185 ************************************************************ consensus_6392#1 CGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGTACGTCCCTTTTATTAA 479 consensus_6392#3 CGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCA 378 consensus_6392#0 CGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCA 304 consensus_6392#2 CGTATGCGTTGGTGTTCCATCCGGTGTGACGCTTAAAATTAAGGTCGTTCGTTCGACGCA 245 ******************************************* *** * ** * * consensus_6392#1 CCTTTGGCACTATTCTACTGAACACATCAAAAATGTG-----------TGTGTTTT---- 524 consensus_6392#3 AACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATT-----------TATACCCG---- 423 consensus_6392#0 AACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGC 364 consensus_6392#2 AACGTATCTGTTTCCCATCCACCTTTGCGAAGAAATTATACCCGCTGCCGTGTTTTACGC 305 * * * * * * * * * ** * * * consensus_6392#1 TTTAATATTTCCACTCTAGGGTCGTTCGTTCGACGCAAACGTATCTGTTTCCCATCCACC 584 consensus_6392#3 C----------------------------------------------------------- 424 consensus_6392#0 TACTGTAACACCGTGGTAACGTATTTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAAT 424 consensus_6392#2 TACTGTAACACCGTGGTAACGTATTT-GTTCTGAAAAAGATGCTCTTCGATCCAATGAAT 364 consensus_6392#1 TTTGCGAAGAAATT-ATACCCGCTGCC---GTGTTTTACGCTACTGTAACACCGCTGGTA 640 consensus_6392#3 ------------------------------------------------------------ consensus_6392#0 GAGGCAACGAAGCAGAAAAACATTGAACGGGTGAAAGAGACCAA-AGTGCTCGGATGGCG 483 consensus_6392#2 GAGGCAACGAAGCAGAAAAACATTGAACGGGTGAAAGAGACCAACAGTGCTCGGATGGCG 424 consensus_6392#1 ACGTATTTTGTTCTGAAAAAGATGCTCTTCGATCCAATGAATGAGGCAACGAAGCA---- 696 consensus_6392#3 ------------------------------------------------------------ consensus_6392#0 GAAAAGCGAAGGGAGGCAGAATCGGCCATTTCCCTGATGGGTGCATTGTTTGAGCGCATT 543 consensus_6392#2 GAAAAGCGAAGGGAGGCAGAATCGGCCATTTCCCTGATGGGTGCATTGTTTGAGCGCATT 484 consensus_6392#1 ------------------------------------------------------------ consensus_6392#3 ------------------------------------------------------------ consensus_6392#0 CGCAAAGACGAACTGAAACGGCAAGGTTG--ATTGTCGTGTCTGCATTGTATGGCAAATT 601 consensus_6392#2 CGCAAAGACGAACTGAAACGGCAAGGTTNTGATTGTCGTGTCTGCATTGTATGGCAAATT 544 consensus_6392#1 ------------------------------------------------------------ consensus_6392#3 ------------------------------------------------------------ consensus_6392#0 TTCGGACGCTGAAA-ACGTGTCATTA--GAANAGGC--AGACGATATGGGTAANGTGCAC 656 consensus_6392#2 TTCGGACGCTGAAACACGTGTCACTTACGAAGAGGCCANNACGATATGGGTTTCGTGCAC 604 consensus_6392#1 ------------------------------------------------------------ consensus_6392#3 ------------------------------------------------------------ consensus_6392#0 CAGAATC-GCT-AGTTGATTG--ATGTTCGAATTCCTTTGACAGNGTATGGGTNGAAAGA 712 consensus_6392#2 CAGAATCCGCTCANCTGNTCTGCATGTTCGAATTCCTTTGCCA-CGTGTGG--TGAAAGA 661 consensus_6392#1 ------------------------------------------------------------ consensus_6392#3 ------------------------------------------------------------ consensus_6392#0 TTTCGGCAATTGACTTGGATNCGGTCATAAGCANGAGGCGAATTGGCCCGGGAATCTATG 772 consensus_6392#2 TTC--GCAATTGACTTG------------------------------------------- 676 consensus_6392#1 ----------------------- consensus_6392#3 ----------------------- consensus_6392#0 ATCAATGGCTAGGTAAGGAAAGN 795 consensus_6392#2 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||