cluster # 6393

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Anopheles gambiae
cluster # 6393 cluster # 6393 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6393#0 length = 1292 sequences # 4

consensus_6393#1 length = 563 sequences # 1

consensusID : consensus_6393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1292
fasta sequence

                              [CCGAAACTAATTGCGTGTTTTCTCGAGAGTTAAGAAAAGTACTTACAAAAAAGAAACTATACGCTTGTGTACAACACGCACCAACCAAAATTTCTCGCCTCTTTACTATTCTTCATCTTTCCTCTTTTCTAACTAGTAACTAACTAACTGCGAGCGTGGAGGAAGTAAAACACATTACTGATACACTAGCAACTTAATGCATCGTCCTTAATAATAATGCAAAATCAAACACATTCATACAAACACAGACAGGCAGACAGACAAACGAGAAGAAGAGAACTACAAACAAATCTAACAAAAGAACCATAAAGCACGCATTGGAGAAAACCAAAAAAACATTGAGAGAAAAGACAAACACTGTATTAGACAGGAGACAAAACAGAGAGAAAGAGAGAGAAGAAGAAAAATAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAATAACAAAACAAAACACTAATGTTAAGATACCCCCCACTGATACCAAAGCACACATTAGATGTCTTAATCGTTTCCGTTCTATTCTGCACCGGTTGCGCATCTCCGTTGTTGCATTGTGCAAGGCGTTTACATACTTCCGAAACAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTATCTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTTACATTAGCCCGGAAAGGTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTG-TCCTTATTGACTGTTTTGGACGTGGTAAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTG]

[+] EMBL BM620729             [CCGAAACTAATTGCGTGTTTTCTCGAGAGTTAAGAAAAGTACTTACAAAAAAGAAACTATACGCTTGTGTACAACACGCACCAACCAAAATTTCTCGCCTCTTTACTATTCTTCATCTTTCCTCTTTTCTAACTAGTAACTAACTAACTGCGAGCGTGGAGGAAGTAAAACACATTACTGATACACTAGCAACTTAATGCATCGTCCTTAATAATAATGCAAAATCAAACACATTCATACAAACACAGACAGGCAGACAGACAAACGAGAAGAAGAGAACTACAAACAAATCTAACAAAAGAACCATAAAGCACGCATTGGAGAAAACCAAAAAAACATTGAGAGAAAAGACAAACACTGTATTAGACAGGAGACAAAACAGAGAGAAAGAGAGAGAAGAAGAAAAATAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAATAACAAAACAAAACACTAATGTTAAGATACCCCCCACTGATACCAAAGCACACATTAGATGTCTTAATCGTTTCCGTTCTATTCTGCACCGGTTGCGCATCTCCGTTGTTGCATTGTGCAAGGCGTTTACATACTTCCGAAACAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX615513             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAACAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTATCTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTTACATTAGCCCGGAAAGGTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTG TCCTTATTGACTGTTTTGGACGTGGTAAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTG]
[+] EMBL BX608357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAACAACAAACACATTTGTTGTTCCTTTTTTCACCGTCTACTCCTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTATCTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTTACATTAGCCCGGAAAGTTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTGTTCCTTATTGACTGTTTTGGACGTGGTAAAATATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATAC                                                                                                          ]
[+] EMBL BX618546             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAAAAGTAACATACAATTTACATTATCCCGGAAAGGTTAATTATGCAAACATTGTTGATCGGGCTTAGTATATATATACATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGTTTTCACCTGTTTCATCAATCACACCTACTGTTCCTTATTGACTGTTTTGGACGTGGTAAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCA                               ]




>consensus_6393#0
CCGAAACTAATTGCGTGTTTTCTCGAGAGTTAAGAAAAGTACTTACAAAAAAGAAACTAT
ACGCTTGTGTACAACACGCACCAACCAAAATTTCTCGCCTCTTTACTATTCTTCATCTTT
CCTCTTTTCTAACTAGTAACTAACTAACTGCGAGCGTGGAGGAAGTAAAACACATTACTG
ATACACTAGCAACTTAATGCATCGTCCTTAATAATAATGCAAAATCAAACACATTCATAC
AAACACAGACAGGCAGACAGACAAACGAGAAGAAGAGAACTACAAACAAATCTAACAAAA
GAACCATAAAGCACGCATTGGAGAAAACCAAAAAAACATTGAGAGAAAAGACAAACACTG
TATTAGACAGGAGACAAAACAGAGAGAAAGAGAGAGAAGAAGAAAAATAAAAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAG
AAATAACAAAACAAAACACTAATGTTAAGATACCCCCCACTGATACCAAAGCACACATTA
GATGTCTTAATCGTTTCCGTTCTATTCTGCACCGGTTGCGCATCTCCGTTGTTGCATTGT
GCAAGGCGTTTACATACTTCCGAAACAACAACAAACACATTTGTTGTTCCTTTTTTCACC
GTCTACTCCTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTATCTCG
TCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTTACAT
TAGCCCGGAAAGGTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATACATAC
ACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCGTTGT
TTTCACCTGTTTCATCAATCACACCTACTGTCCTTATTGACTGTTTTGGACGTGGTAAAG
TATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTTCTGC
ATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTTGGTT
TTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTATCGT
TTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAGCTAA
AGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGC
AAACATACGCACCGATTCGCACCGTACAATTG

consensusID : consensus_6393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [GCAGTTCTGTGTGCAGCGAAAAGGAAGTGTTAGTGTGCGGAAGCAAAAGAAAAGAAGAAAAGAAAAAAGTGCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTGTTGAGAAGAGAAAAAACGGAATTGATTTTCACAGTTTGTCCTCTACACGGTCGGAGTGATGAGTGGGCAAGGGGTTTTATTTATTTGGACGAAAATAAACCAGAAGTAAAATAGATAGTGAATTGCTTTTCTGAGTTATTGTTTCTTGTTTCCGTTCCGTTGTCGTTTGCACTTAAATCATGGAAGCCAATAATGGTTTGTTTTGTTCTTTTTTTTAATACTGTGTTGATTCGCCTTTTCGTTGGGATTATCCGAACGCATTTGCAACACACACACACACTCACATAGCATGGAGAAGATGAGCAGGCAAACAACCATGGAAAATTATTATACATTGTATGAATGAATTTTTGATAATCTAATT]

[+] EMBL BX610987             [GCAGTTCTGTGTGCAGCGAAAAGGAAGTGTTAGTGTGCGGAAGCAAAAGAAAAGAAGAAAAGAAAAAAGTGCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACCGATTCGCACCGTACAATTGTTGAGAAGAGAAAAAACGGAATTGATTTTCACAGTTTGTCCTCTACACGGTCGGAGTGATGAGTGGGCAAGGGGTTTTATTTATTTGGACGAAAATAAACCAGAAGTAAAATAGATAGTGAATTGCTTTTCTGAGTTATTGTTTCTTGTTTCCGTTCCGTTGTCGTTTGCACTTAAATCATGGAAGCCAATAATGGTTTGTTTTGTTCTTTTTTTTAATACTGTGTTGATTCGCCTTTTCGTTGGGATTATCCGAACGCATTTGCAACACACACACACACTCACATAGCATGGAGAAGATGAGCAGGCAAACAACCATGGAAAATTATTATACATTGTATGAATGAATTTTTGATAATCTAATT]




>consensus_6393#1
GCAGTTCTGTGTGCAGCGAAAAGGAAGTGTTAGTGTGCGGAAGCAAAAGAAAAGAAGAAA
AGAAAAAAGTGCACACACAACTACACGACATACATACGCATAGCTAAAGAAAGATTGCTA
ACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAATTGCAAACATACGCACC
GATTCGCACCGTACAATTGTTGAGAAGAGAAAAAACGGAATTGATTTTCACAGTTTGTCC
TCTACACGGTCGGAGTGATGAGTGGGCAAGGGGTTTTATTTATTTGGACGAAAATAAACC
AGAAGTAAAATAGATAGTGAATTGCTTTTCTGAGTTATTGTTTCTTGTTTCCGTTCCGTT
GTCGTTTGCACTTAAATCATGGAAGCCAATAATGGTTTGTTTTGTTCTTTTTTTTAATAC
TGTGTTGATTCGCCTTTTCGTTGGGATTATCCGAACGCATTTGCAACACACACACACACT
CACATAGCATGGAGAAGATGAGCAGGCAAACAACCATGGAAAATTATTATACATTGTATG
AATGAATTTTTGATAATCTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6393#0      CCGAAACTAATTGCGTGTTTTCTCGAGAGTTAAGAAAAGTACTTACAAAAAAGAAACTAT 60
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      ACGCTTGTGTACAACACGCACCAACCAAAATTTCTCGCCTCTTTACTATTCTTCATCTTT 120
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      CCTCTTTTCTAACTAGTAACTAACTAACTGCGAGCGTGGAGGAAGTAAAACACATTACTG 180
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      ATACACTAGCAACTTAATGCATCGTCCTTAATAATAATGCAAAATCAAACACATTCATAC 240
consensus_6393#1      --------------------------------------GCAGTTCTGTGTGCAGCGAAAA 22
                                                            ***          **   * * 

consensus_6393#0      AAACACAGACAGGCAGACAGACAAACGAGAAGAAGAGAACTACAAACAAATCTAACAAAA 300
consensus_6393#1      GGAAGTGTTAGTGTGCGGAAGCAAAAGAAAAGAAGAAAA---GAAAAAAGTGCAC--ACA 77
                        *         *     *  **** ** ******* **    *** ** *  *   * *

consensus_6393#0      GAACCATAAAGCACGCATTGGAGAAAACCAAAAAAACATTGAGAGAAAAGACAAACACTG 360
consensus_6393#1      CAACTACACGACATACAT-ACGCATAGCTAAAGAAAGATTGCTAACAAAGCCTGAAGCCA 136
                       *** * *   **  ***     * * * *** *** ****  *  **** *  *  *  

consensus_6393#0      TATTAGACAGGAGACAAAACAGAGAGAAAGAGAGAGAAGAAGAAAAATAAAAAGAAGAAG 420
consensus_6393#1      CGTTTGGTTTGGTGCGCAATA-ATTCAATTGCAAACATACGCACCGATTCGCACCGTACA 195
                        ** *    *   *  ** * *   **    * * *     *   **    *    *  

consensus_6393#0      AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAG 480
consensus_6393#1      ATTGTTGAGAAGAGAAAAAACGGAATTGATTTTCACAGTTTGTCCTCTACACGGTCGGAG 255
                      *      ******  ** **    *   *     * *    *      *    *  * **

consensus_6393#0      AAATAACAAAACAAAACACTAATGTTAAGATACCCCCCACTGATACCAAAGCACACATTA 540
consensus_6393#1      TGATGAGTGGGCAAGGGGTTT-TATTTATTTGGACGAAAATAA-ACCAGAA-GTAAAATA 312
                        ** *     ***     *  * ** *  *   *   * * * **** *    * * **

consensus_6393#0      GATGTCTTAAT-CGTTTCCGTTCTATTCTGCACCGGTTGCGCATCTCCGTTGTTGCATTG 599
consensus_6393#1      GATAGTGAATTGCTTTTCTGAGTTATTGTTTCTTGTTTCCGT---TCCGTTGTCGTTT-- 367
                      ***     * * * **** *   **** *     * ** **    ******** *  *  

consensus_6393#0      TGCAAGGCGTTTACATACTTCCGAAACAACAACAAACACATTTGTTGTTCCTTTTTTCAC 659
consensus_6393#1      ------GCACTTAAAT-CATGGAAGCCAATAATGGTTTGTTTTGTTCTTTTTTTTAATAC 420
                            **  *** ** * *   *  *** **        ****** **  ****   **

consensus_6393#0      CGTCT--ACTC-CTTCCTCGATCGTACGACACAGCACGCACGTAGAAAGAAAGTGCTTAT 716
consensus_6393#1      TGTGTTGATTCGCCTTTTCGTTGGGATTATCC-GAACGCATTTGCAACACACACACACA- 478
                       ** *  * ** * *  *** * * *  *  * * *****  *  **   *    *  * 

consensus_6393#0      CTCGTCTTATGTTCTACAAGAACAGCAGCAACCCAAAAAAAAAAAAGTAACATACAATTT 776
consensus_6393#1      CTCA-CATAGCATGGAGAAGATGAGCAGGCAAACAACCATGGAAAATTATTATACA--TT 535
                      ***  * **   *  * ****  *****  *  ***  *   **** **  *****  **

consensus_6393#0      ACATTAGCCCGGAAAGGTTAATTAGGCAAACATTGTTGATCGGGCTTAGTATATATATAC 836
consensus_6393#1      GTATGAAT---GAATTTTTGATAATCTAATT----------------------------- 563
                        ** *     ***   ** ** *   **                               

consensus_6393#0      ATACACACACACACACTGCGTAAGTGGAACGTCTGTAAGGTCTGTATCTCTTCCGCGCCG 896
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      TTGTTTTCACCTGTTTCATCAATCACACCTACTGTCCTTATTGACTGTTTTGGACGTGGT 956
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      AAAGTATAAGGCGAGTACGAGTTTATCGAATCAATTAGTATAGTTAAATATTTCCCATTT 1016
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      CTGCATTATCCTTCTCCACGTGTCGGTGTCGTTGTAAGGATGCGCAGCGACGCACTGTTT 1076
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      GGTTTTGTTAGGAGTGTTTTTGAGTGCAAATCATTTCTCCAGGAGTGGTGTGTAAGCTTA 1136
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      TCGTTTCAGTAGCAAACAATACAACACCCACACACAACTACACGACATACATACGCATAG 1196
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      CTAAAGAAAGATTGCTAACAAAGCCTGAAGCCACGTTTGGTTTGGTGCGCAATAATTCAA 1256
consensus_6393#1      ------------------------------------------------------------
                                                                                  

consensus_6393#0      TTGCAAACATACGCACCGATTCGCACCGTACAATTG 1292
consensus_6393#1      ------------------------------------