cluster # 6394

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Anopheles gambiae
cluster # 6394 cluster # 6394 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6394#0 length = 791 sequences # 3

consensus_6394#1 length = 553 sequences # 1
consensus_6394#2 length = 263 sequences # 1

consensusID : consensus_6394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 791
fasta sequence

                              [TTTTTTTGTGTGTGTGGGTATAAGTATGGCTGCTATTCTGCGGGATACCTTAACATAACATTAACAACACAAATCCTTCTCCCCAACAACCGGGAGCSCAACACCTTGGGGAGGAAAACGCTTCGAGTSCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTTACATCACTCACACGAGCGAAAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAAGTCGTAACAAAAGACGCAATCGCTCGGAAGTTTTCCCTCGGTACCCAATACTTGGAGCTAAAGCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAAGTGGCCCGGTGGGTTCGGAACTTTCATCGAAAAAA]

[+] EMBL AGA281526            [TTTTTTTGTGTGTGTGGGTATAAGTATGGCTGCTATTCTGCGGGATACCTTAACATAACATTAACAACACAAATCCTTCTCCCCAACAACCGGGAGCSCAACACCTTGGGGAGGAAAACGCTTCGAGTSCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM589578             [                                                                                                             ccgGGAAAACGCTTCGAGTGCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTTACATCACTCACACGAGCGAAAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAAGTCGTAACAAAAGACGCAATCGCTCGGAAGTTTTCCCTCGGTACCCAATACTTGGAGCTAAAGCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAAGTGGCCCGGTGGGTTCGGAACTTTCATCGAAAAAA]
[+] EMBL BX617681             [                                                                                                                                                           AGTTAAAATAAGGATCGATAAATTTAAATCAAACCCCCGCTAACTTTTTACATCATTCACACGAGCGAAAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAAGTCGTAACAAAAGACGCAATCGCTC                                                                                                              ]




>consensus_6394#0
TTTTTTTGTGTGTGTGGGTATAAGTATGGCTGCTATTCTGCGGGATACCTTAACATAACA
TTAACAACACAAATCCTTCTCCCCAACAACCGGGAGCSCAACACCTTGGGGAGGAAAACG
CTTCGAGTSCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTT
AAATCAAACCCCCGCTAACTTTTTACATCACTCACACGAGCGAAAGTTGGCCGGTTCGGT
TCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCT
CTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTT
TTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAA
ATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTA
CCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATG
GGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATT
TACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAAGTCG
TAACAAAAGACGCAATCGCTCGGAAGTTTTCCCTCGGTACCCAATACTTGGAGCTAAAGC
AAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAAGTGGCCCGGTGGGTTCGGAACTTT
CATCGAAAAAA

consensusID : consensus_6394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [CCGGTACAACCGAGAACGGCGAAAGGCGGGGTGCGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTTTCGCCCAGCTCGCCACCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAATTCCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAGTACTTGGAGCTAAGCCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAGGGTGCCCGGTGGGTTCGGAACTTTCATCGAAAAACAGAGGGTCGCTCTACATTCGAATTCAGCGAAATTGGTCGCACTGCGGTTGCCGTGAAAAGCGCTTTTCTTCTCCCAACTGGAGAAAGCTCAT]

[+] EMBL BM643087             [CCGGTACAACCGAGAACGGCGAAAGGCGGGGTGCGTTCTCGCGTGCCCTCCGACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGTGGGTTTTTTTTTCGCCCAGCTCGCCACCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAATCGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGACAATGGGCCGAGCGAGCACCAATTCCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGTTATTTACCCAGTACTTGGAGCTAAGCCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAGGGTGCCCGGTGGGTTCGGAACTTTCATCGAAAAACAGAGGGTCGCTCTACATTCGAATTCAGCGAAATTGGTCGCACTGCGGTTGCCGTGAAAAGCGCTTTTCTTCTCCCAACTGGAGAAAGCTCAT]




>consensus_6394#1
CCGGTACAACCGAGAACGGCGAAAGGCGGGGTGCGTTCTCGCGTGCCCTCCGACTCGCCC
ATTCTCTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCCACATGT
GGGTTTTTTTTTCGCCCAGCTCGCCACCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGT
AAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGCGTTTGAAAT
CGGCTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATG
GACAATGGGCCGAGCGAGCACCAATTCCCCACCCCCCTCTCCCCGTACTTCAAGCGTATG
TGTTATTTACCCAGTACTTGGAGCTAAGCCAAGACCGGCCCAGACCAGGCGCACCTTCGA
AAAAAGGGTGCCCGGTGGGTTCGGAACTTTCATCGAAAAACAGAGGGTCGCTCTACATTC
GAATTCAGCGAAATTGGTCGCACTGCGGTTGCCGTGAAAAGCGCTTTTCTTCTCCCAACT
GGAGAAAGCTCAT

consensusID : consensus_6394#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [AAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCNACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGSAGTGCAAATATTGTGCTNNNCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGATGTTATTTATTTACTTATTTT]

[-] EMBL AGA283117            [AAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCNACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGSAGTGCAAATATTGTGCTNNNCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGATGTTATTTATTTACTTATTTT]




>consensus_6394#2
AAGTTGGCCGGTTCGGTTCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCC
TCCNACTCGCCCATTCTCTCCCTATCTACAATGAATCAAACCCAGSAGTGCAAATATTGT
GCTNNNCACATGTGGGTTTTTTTCGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAG
GAAAAATAAGTAAAATAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAA
GATGTTATTTATTTACTTATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6394#0      TTTTTTTGTGTGTGTGGGTATAAGTATGGCTGCTATTCTGCGGGATACCTTAACATAACA 60
consensus_6394#2      ------------------------------------------------------------
consensus_6394#1      ------------------------------------------------------------
                                                                                  

consensus_6394#0      TTAACAACACAAATCCTTCTCCCCAACAACCGGGAGCSCAACACCTTGGGGAGGAAAACG 120
consensus_6394#2      ------------------------------------------------------------
consensus_6394#1      ------------------------------------------------------------
                                                                                  

consensus_6394#0      CTTCGAGTSCAGTTTGGTGGGATAAAATTGTACAAAGTTAAAATAAGGATCGATAAATTT 180
consensus_6394#2      ------------------------------------------------------------
consensus_6394#1      ------------------------------------------------------------
                                                                                  

consensus_6394#0      AAATCAAACCCCCGCTAACTTTTTACATCACTCACACGAGCGAAAGTTGGCCGGTTCGGT 240
consensus_6394#2      -------------------------------------------AAGTTGGCCGGTTCGGT 17
consensus_6394#1      -------------------------------------------------------CCGGT 5
                                                                              ****

consensus_6394#0      TCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCGACTCGCCCATTCT 300
consensus_6394#2      TCAACCAAGAACGGCGAAAGGCGGGGTACGTTCTCGCGTGCCCTCCNACTCGCCCATTCT 77
consensus_6394#1      ACAACCGAGAACGGCGAAAGGCGGGGTGCGTTCTCGCGTGCCCTCCGACTCGCCCATTCT 65
                       ***** ******************** ****************** *************

consensus_6394#0      CTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCC-ACATGTGGGT 359
consensus_6394#2      CTCCCTATCTACAATGAATCAAACCCAGSAGTGCAAATATTGTGCTNNNCACATGTGGGT 137
consensus_6394#1      CTCCCTATCTACAATGAATCAAACCCAGGAGTGCAAATATTGTGCTCCC-ACATGTGGGT 124
                      **************************** *****************    **********

consensus_6394#0      TTTTTT--CGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAA 417
consensus_6394#2      TTTTTT--CGCCCAGCTCGCCGCCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAA 195
consensus_6394#1      TTTTTTTTCGCCCAGCTCGCCACCTCGTTGAGAGAGAAAGTGCAGGAAAAATAAGTAAAA 184
                      ******  ************* **************************************

consensus_6394#0      TAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAG-CGTTTGAAATCGG 476
consensus_6394#2      TAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAGATGTTATTTATTTA 255
consensus_6394#1      TAAATAACATCTTTCCAAATGCTCCCGCTGCCGGCTGGAGGGAAAG-CGTTTGAAATCGG 243
                      **********************************************  ***    **   

consensus_6394#0      CTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGAC 536
consensus_6394#2      CTTATTTT---------------------------------------------------- 263
consensus_6394#1      CTTACCTGAGGGCGCAACAACACACCGCGAATCGGAGAACAGCGCGAATAAATCATGGAC 303
                      ****  *                                                     

consensus_6394#0      AATGGGCCGAGCGAGCACCAAGACCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGT 596
consensus_6394#2      ------------------------------------------------------------
consensus_6394#1      AATGGGCCGAGCGAGCACCAATTCCCCACCCCCCTCTCCCCGTACTTCAAGCGTATGTGT 363
                                                                                  

consensus_6394#0      TATTTACCCAACCCGGGTAACGCACCGCGCAAGCAGCTTTCGCGAAAGTCCATAATAAAA 656
consensus_6394#2      ------------------------------------------------------------
consensus_6394#1      TATTTACCCAGTACTTGGAGCTAA--GCCAAGACCGGCCCAGACCAGGCGCACCTTCGAA 421
                                                                                  

consensus_6394#0      GTCGTAACAAAAGACGCAATCGCTCGGAAGTTTTCCCTCGGTACCCAATACTTGGAGCTA 716
consensus_6394#2      ------------------------------------------------------------
consensus_6394#1      -----AAAAGGGTGCCCGGTGGGTTCGGAACTTTCA-TCGAAAAACAGAGGGTCGCTCTA 475
                                                                                  

consensus_6394#0      AAGCAAGACCGGCCCAGACCAGGCGCACCTTCGAAAAAAAGTGGCCCGGTGGGTTCGGAA 776
consensus_6394#2      ------------------------------------------------------------
consensus_6394#1      CATTCGAATTCAGCGAAATTGGTCGCACTGCGGTTGCCGTGAAAAGCGCTTTTCTTCTCC 535
                                                                                  

consensus_6394#0      CTTTCATCGAAAAAA--- 791
consensus_6394#2      ------------------
consensus_6394#1      CAACTGGAGAAAGCTCAT 553