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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1005 fasta sequence
[GGCAGTAGCAGTAGTACCTCCTCTTATATCCGCTGGCATCGACCTGTAAATGATTTACTCGAAAACCATGGCCTAAACATGAGCGAATCTCGTCGGGTACCAGCCTGGGTGGGTACAACGACCTGGCAAGAAGCACATCAACACCCGTCCTTTACGCTAGTGAATATTTCAAACAAGGTGGAACAGTTGCACGATGCCGAAAGTGACGAGGACTCGCATGGCGACGGTCAGTACCCGGTGGTACACACAGAGCTGCTTCCGTTCGGAAATCGGTACGAGGAAGAGTCGATCGAATCGATCGCTGCGAACGGAGCACCAAAGGCCATCCTTCATTATGTGGCACCGTCCGTGGCTCACTTTGACGATTTCGATGACTACGACGAAATATTGCCGCAGGTGCATCAGGTGAAGCCAAAACCTCCGAACAGCGAGATAGAAGACGAGGAGGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAGCGTAGCCGGGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTCCCGTCAGCCGAA-GGGGCGCTGCTTACCATTTC-TTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTTAAACGCACCCGGCGCCAAACGGTTGATCC]
[+] EMBL BX621860 [GGCAGTAGCAGTAGTACCTCCTCTTATATCCGCTGGCATCGACCTGTAAATGATTTACTCGAAAACCATGGCCTAAACATGAGCGAATCTCGTCGGGTACCAGCCTGGGTGGGTACAACGACCTGGCAAGAAGCACATCAACACCCGTCCTTTACGCTAGTGAATATTTCAAACAAGGTGGAACAGTTGCACGATGCCGAAAGTGACGAGGACTCGCATGGCGACGGTCAGTACCCGGTGGTACACACAGAGCTGCTTCCGTTCGGAAATCGGTACGAGGAAGAGTCGATCGAATCGATCGCTGCGAACGGAGCACCAAAGGCCATCCTTCATTATGTGGCACCGTCCGTGGCTCACTTTGACGATTTCGATGACTACGACGAAATATTGCCGCAGGTGCATCAGGTGAAGCCAAAACCTCCGAACAGCGAGATAGAAGACGAGGAGGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACNAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACNACGATATGTACCAGTCCGAGCAGCGTAGCCGGGTC AGCGCGGTTGGATNGAACCGCACGCAGACACGGAGGCCATGG ]
[+] EMBL BX614808 [ CGAACAGCGAGATAGAAGTAGAGGAGGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATTGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAGCGTAGCCGGGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTCCCGTCAGCCGAA GGGGCGCTGCTTACCATTTC TTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTTAAACGCACCCGGCGCCAAACGGTTGATCC]
[+] EMBL BX616749 [ GGAGGAGGAGTACGTAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAACAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGACTAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAGCGAACGGCACACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACCATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAGCGTAGCCGTGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTCCCGTCAGCCGAAGGGGGCGCTGCTTACCATTTCTTTTTCTCACCTT ]
consensusID : consensus_6403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[TTTAATCTATTCCAGCTAAACCAGCCTAACATATATCATCACTAAAAAGAGCCTCCTAGTAAACAGCGATCGAAAATTCACAAATATACGAAATCTAATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCTTGTCGAGATAATTATGATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACATTTCTTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTAAACGCACCCGGCGACAAACGGTTGAACCGCACGAACTGCAGGTGATCCTGGGTGCACTCAATGGCTTTCGGCCCACGTAGTACACCACCTCAGGCGTGTGCTGCTTACTTTTTGGAGGCAATTTTACAAGCTGTCTATAATTCATTTCTCATTTGATTCGGACGCGTGGGCGG]
[-] EMBL BM593090 [TTTAATCTATTCCAGCTAAACCAGCCTAACATATATCATCACTAAAAAGAGCCTCCTAGTAAACAGCGATCGAAAATTCACAAATATACGAAATCTAATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCTTGTCGAGATAATTATGATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACATTTCTTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTAAACGCACCCGGCGACAAACGGTTGAACCGCACGAACTGCAGGTGATCCTGGGTGCACTCAATGGCTTTCGGCCCACGTAGTACACCACCTCAGGCGTGTGCTGCTTACTTTTTGGAGGCAATTTTACAAGCTGTCTATAATTCATTTCTCATTTGATTCGGACGCGTGGGCGG]
consensusID : consensus_6403#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[ATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCTAAAACAGTTAAGAAAAAATCAGCAATAAGTTCTAGTCACGTTATAAGTTCTTACCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCCTGTCGAGATAATTATGATCCATTGGCAGTTTTTTTTCGAATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACTAACAACAAGGAAGATAAGCAACATCGCAAAACAAATTAACTAGATTATTTGTAATTTGTGTAAGAGTTCGCTTTAAATTTGGGTTTTTTATGTGTTTAATGTGCGTAGTATTGAAGTTAGCTTTGCTTTAACAGTTCAGGCTACTCCAACTAATAGTGAAGAGAAAAAAAGAAAACTCTTTTAGATGTAAATCTTACAAC]
[+] EMBL BX618884 [ATGAAAGCGTAAACAAAAACTCATACCCTTGCGTGTAATCAACCAAATAGAGCACTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCGATTTTATGGCAGATTGTGAGTTGTTGTCTAAAACAGTTAAGAAAAAATCAGCAATAAGTTCTAGTCACGTTATAAGTTCTTACCCCCAGTTTGGTGTCCTTTCTATTTTGTACCTTCCATTCCCTGTCGAGATAATTATGATCCATTGGCAGTTTTTTTTCGAATCTTGCACATTTTTGCATTGTTCCAGCAACCAAAAAAGCCTTCAGTGGATAAGTTTTGTGTGTGGTGCGTTCTATAAAGAAAATAACAACTACTAACAACAAGGAAGATAAGCAACATCGCAAAACAAATTAACTAGATTATTTGTAATTTGTGTAAGAGTTCGCTTTAAATTTGGGTTTTTTATGTGTTTAATGTGCGTAGTATTGAAGTTAGCTTTGCTTTAACAGTTCAGGCTACTCCAACTAATAGTGAAGAGAAAAAAAGAAAACTCTTTTAGATGTAAATCTTACAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6403#1 -----------------TTTAATCTATTCCAGCTAAACCAGCCTAACATATATCATCACT 43
consensus_6403#2 ------------------------------------------------------------
consensus_6403#0 GGCAGTAGCAGTAGTACCTCCTCTTATATCCGCTGGCATCGACCTGTAAATGATTTACTC 60
consensus_6403#1 AAAAAGAGCCTCCTAGTAAACAGCGA------TCGAAAATTCAC----AAATATACGAAA 93
consensus_6403#2 ------------------------------------------------------------
consensus_6403#0 GAAAACCATGGCCTAAACATGAGCGAATCTCGTCGGGTACCAGCCTGGGTGGGTACAACG 120
consensus_6403#1 TCTAATGAAAGCGTAAACAAAAACTCATACCCT-TGCGTGTAATCAAC-CAAATAGAGCA 151
consensus_6403#2 ----ATGAAAGCGTAAACAAAAACTCATACCCT-TGCGTGTAATCAAC-CAAATAGAGCA 54
consensus_6403#0 ACCTGGCAAGAAGCACATCAACACCCGTCCTTTACGCTAGTGAATATTTCAAACAAGGTG 180
** * * * ** ** * * * * ** ** * * **** * *
consensus_6403#1 CTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCG-ATTTTAT 210
consensus_6403#2 CTATTGAAACACTCTTTTACAGACCCCAACTTTCCCGTCCGTCGCTTGTTCG-ATTTTAT 113
consensus_6403#0 GAACAGTTGCACGATGCCGAAAGTGACGAGGA-CTCGCATGGCGACGGTCAGTACCCGGT 239
* * *** * * * * * ** * ** ** * * *
consensus_6403#1 GGCAGATTGTGAGTTGTTGTC--------------------------------------- 231
consensus_6403#2 GGCAGATTGTGAGTTGTTGTCTAAAACAGTTAAGAAAAAATCAGCAATAAGTTCTAGTCA 173
consensus_6403#0 GGTACACACAGAGCTGCTTCCGTTCGGAAATCGGTACGAGGAAGAGTCGATCGAATCGAT 299
** * * *** ** * *
consensus_6403#1 -----------------CCCAGTTTGGTGTCCTTT-CTATTTTGTACCTTCCATTCCTTG 273
consensus_6403#2 CGTTATAAGTTCTTACCCCCAGTTTGGTGTCCTTT-CTATTTTGTACCTTCCATTCCCTG 232
consensus_6403#0 CGCTGCGAA---CGGAGCACCAAAGGCCATCCTTCATTATGTGGCACCGTCCGTGGCTCA 356
* * * ***** *** * * *** *** * *
consensus_6403#1 TCGAGATAATTATGATC-----------------------TTGCACATTTTTGCAT-TGT 309
consensus_6403#2 TCGAGATAATTATGATCCATTGGCAGTTTTTTTTCGAATCTTGCACATTTTTGCAT-TGT 291
consensus_6403#0 CTTTGACGATTTCGATGACTACGA----------------CGAAATATTGCCGCAGGTGC 400
** *** *** * *** *** **
consensus_6403#1 TCCAGCAACCAAAAAAGCCTTC----AGTG-GATAAGTTTTGTGTGTGGTGCGTTCTATA 364
consensus_6403#2 TCCAGCAACCAAAAAAGCCTTC----AGTG-GATAAGTTTTGTGTGTGGTGCGTTCTATA 346
consensus_6403#0 ATCAGGTGAAGCCAAAACCTCCGAACAGCGAGATAGAAGACGAGGAGGAGGAGGAGTACG 460
*** *** *** * ** * **** * * * * * **
consensus_6403#1 AAGAAAATAACAAC-TACATTTCTTTTCTCACCTTCGCCGTATTTCTGATCAAGCTGGTG 423
consensus_6403#2 AAGAAAATAACAAC-TACTAACAACAAGGAAGATAAGCAACATCGCAAAACAAATTAAC- 404
consensus_6403#0 TAGAAGAGGAAGACCTAGAAGAGGTGCACGAACCGGATAGGACCATCGAGGAATTTGAAA 520
**** * * ** ** * * * ** *
consensus_6403#1 CTACAG-GTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTCGCGGCGGC 482
consensus_6403#2 ---TAG-ATTATTTGTAATTT----GTGTAAGAGTTCGCTT----TAAATTTGGGTTTTT 452
consensus_6403#0 CAGTGGAGCAAGCGAAACTACCGAGTAATCTTCATGTGCATCCCCAACCACCGACGGGAC 580
* * * * * * * *
consensus_6403#1 CACACCGGTGTCGGGCGGATTACTAGTTAAACGCACCCGGCGACAAACGGTTGAACCGCA 542
consensus_6403#2 TATGTGTTTAATGTGCGTAGTATTG---AAGTTAGCTTTGCTTTAACAGTTCAGGCTACT 509
consensus_6403#0 TAGGTGGATTTCTCGACTTTCTCCGACGCATGCAGGTCAGCTTCGTGCAG-CGAACGGCA 639
* * * * ** * *
consensus_6403#1 CGAACTGCAGGTGAT--CCTGGGTGCACTCAATGGCTTTCG-GCCCACGTAGTACACCAC 599
consensus_6403#2 CCAACTAATAGTGAA--GAGAAAAAAAGAAAACTCTTTTAG-ATGTAAATCTTACAAC-- 564
consensus_6403#0 CACACGATCGGTGACAAGATAAGAATGCTGGCCGGGATGCGCGATCAGCTCCTGAGCACC 699
* ** **** * * * * *
consensus_6403#1 CTCAGGCGTGTGCTGCTTACTTTTTGGAGGCAATTTTACAAGCTGT-CTATAATTCATTT 658
consensus_6403#2 ------------------------------------------------------------
consensus_6403#0 ATTGAGCGACGGATTGCCGTTCTATGGCGGGGTAACAACGATATGTACCAGTCCGAGCAG 759
consensus_6403#1 CTCATTTGATTCGGACGCG--TGGGCGG-------------------------------- 684
consensus_6403#2 ------------------------------------------------------------
consensus_6403#0 CGTAGCCGGGCCAAGCGCGGTTGGATGGAACCGCACGCAGACACGGAGGCCATGGACTTC 819
consensus_6403#1 ------------------------------------------------------------
consensus_6403#2 ------------------------------------------------------------
consensus_6403#0 CCGTCAGCCGAAGGGGCGCTGCTTACCATTTCTTTTCTCACCTTCGCCGTATTTCTGATC 879
consensus_6403#1 ------------------------------------------------------------
consensus_6403#2 ------------------------------------------------------------
consensus_6403#0 AAGCTGGTGCTACAGGTGATCAACACGATCAAGGCGAAACACTACACGTACAGCACATTC 939
consensus_6403#1 ------------------------------------------------------------
consensus_6403#2 ------------------------------------------------------------
consensus_6403#0 GCGGCGGCCACACCGGTGTCGGGCGGATTACTAGTTTAAACGCACCCGGCGCCAAACGGT 999
consensus_6403#1 ------
consensus_6403#2 ------
consensus_6403#0 TGATCC 1005
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||