cluster # 6404

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Anopheles gambiae
cluster # 6404 cluster # 6404 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6404#0 length = 1326 sequences # 4

consensus_6404#1 length = 661 sequences # 1

consensusID : consensus_6404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1326
fasta sequence

                              [CCGCCCACGCGTCCGACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGACCGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCG-AGGAGCGTTGGTTCCGCCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGAGGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGGCATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAAGGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAAGGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCAGGGACTGCGGCCGAACCTCGGTACGCTGAACGGCATCCTGCAGACGGTGACAACGATCGGTGGGTACAATCATCCGCGCACGTACGCGCTCAAAACGTTGGCCGAGTTTAAGCAGCTCGGTATCGAACCGTCCCTGGCGAGCTGGTACTACATGCTGGTCATCTTCTGTCGCGAACGGGGCCCGGTCAGCCACGTGCTGCACGACATTATGAACGAGATCGAGGGCAAAGAGTTTACGATCCAGGATCCGAAGGATACGTTCTTCTTCGTGACGGCGATGGACGTGTGCCGCAACCATCTGCACGA]

[+] EMBL BM585136             [CCGCCCACGCGTCCGACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGACCGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCGAAGGAGCGTTGGTTCCGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM616324             [                                                                                                                           ccgCTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGACCGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM640850             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGACCGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCTCTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCG AGGAGCGTTGGTTCCGCCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGAGGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGGCATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAAGGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAAGGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCA                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM623379             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ccgGCTGCCGGAACAGTTCATCG AGGAGCGTTGGTTCCGCCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGAGGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGGCATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAAGGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAAGGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCAGGGACTGCGGCCGAACCTCGGTACGCTGAACGGCATCCTGCAGACGGTGACAACGATCGGTGGGTACAATCATCCGCGCACGTACGCGCTCAAAACGTTGGCCGAGTTTAAGCAGCTCGGTATCGAACCGTCCCTGGCGAGCTGGTACTACATGCTGGTCATCTTCTGTCGCGAACGGGGCCCGGTCAGCCACGTGCTGCACGACATTATGAACGAGATCGAGGGCAAAGAGTTTACGATCCAGGATCCGAAGGATACGTTCTTCTTCGTGACGGCGATGGACGTGTGCCGCAACCATCTGCACGA]




>consensus_6404#0
CCGCCCACGCGTCCGACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATT
TATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACG
GGTGCACTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCAC
CTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGA
GAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTC
CGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCT
GATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAA
GGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCC
GCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGAC
CGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCT
GCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCT
CTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCGAGGAGCGTTGGTTCCG
CCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGA
GGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGG
CATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAA
GGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAA
GGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCA
GGGACTGCGGCCGAACCTCGGTACGCTGAACGGCATCCTGCAGACGGTGACAACGATCGG
TGGGTACAATCATCCGCGCACGTACGCGCTCAAAACGTTGGCCGAGTTTAAGCAGCTCGG
TATCGAACCGTCCCTGGCGAGCTGGTACTACATGCTGGTCATCTTCTGTCGCGAACGGGG
CCCGGTCAGCCACGTGCTGCACGACATTATGAACGAGATCGAGGGCAAAGAGTTTACGAT
CCAGGATCCGAAGGATACGTTCTTCTTCGTGACGGCGATGGACGTGTGCCGCAACCATCT
GCACGA

consensusID : consensus_6404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [CCGGCGGTGCAAAAACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGACGTACGGCAAAGTGTTCAGCGCATCACAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGACCGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCTCT]

[+] EMBL BM594898             [CCGGCGGTGCAAAAACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTTATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGGGTGCACTCGCGCAACCACACGCTGACGTACGGCAAAGTGTTCAGCGCATCACAAAGCACCTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAGAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCCGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTGATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAGGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCGCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGACCGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTGCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCTCT]




>consensus_6404#1
CCGGCGGTGCAAAAACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATTT
ATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACGG
GTGCACTCGCGCAACCACACGCTGACGTACGGCAAAGTGTTCAGCGCATCACAAAGCACC
TCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGAG
AAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTCC
GCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCTG
ATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAAG
GCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCCG
CCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGACC
GATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCTG
CTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCTC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6404#0      CCGCCCACGCGTCCGACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATT 60
consensus_6404#1      CCGGCGGTGCAAA-AACGCAACGTGCGGTGCACGCATTTTCTGCTCAATTTCATTGCATT 59
                      *** *   **     *********************************************

consensus_6404#0      TATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACG 120
consensus_6404#1      TATCTGTGAAAAAGCATCGTAAAGGATGAACAATTTGTGGAAATCCATGTACCGATTACG 119
                      ************************************************************

consensus_6404#0      GGTGCACTCGCGCAACCACACGCTGGCGTACGGCAAAGTGTTCAGCGCATCGCAAAGCAC 180
consensus_6404#1      GGTGCACTCGCGCAACCACACGCTGACGTACGGCAAAGTGTTCAGCGCATCACAAAGCAC 179
                      ************************* ************************* ********

consensus_6404#0      CTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGA 240
consensus_6404#1      CTCATCGCAGCCGGCATCGTCGACGGGTGATACCGGTGCGACAGCACCACCGGCGAAAGA 239
                      ************************************************************

consensus_6404#0      GAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTC 300
consensus_6404#1      GAAGATCGTAATACCGACCCGAATCGAACGTGGCCCGACCGACATTCTGATGGCACTGTC 299
                      ************************************************************

consensus_6404#0      CGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCT 360
consensus_6404#1      CGCGACGGTCGGGTTCGATCCGACCGCTCCGCACTACAAATACCACGACGATCCGTACCT 359
                      ************************************************************

consensus_6404#0      GATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAA 420
consensus_6404#1      GATACCGACGTCGAACGCGAACAAGAAAACGTACGCCCTGGCGCAGGAGGCGGGACGCAA 419
                      ************************************************************

consensus_6404#0      GGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCC 480
consensus_6404#1      GGCGGCCCACTGGATACGGCAGGAGAACGCGAAGCTGTTCCGGCACATGGAAGCTGACCC 479
                      ************************************************************

consensus_6404#0      GCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAGAGCCAGGTGGAGACGAC 540
consensus_6404#1      GCCGGTGCAAGCGTTCGTACCGACGATGGTGTACAACGAGGAAAGCCAGGTGGAGACGAC 539
                      ****************************************** *****************

consensus_6404#0      CGATCTGCAACAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCT 600
consensus_6404#1      CGATCTGCAGCAGCTGATCGACAGCGTGGAGGTGAAGGACGCGATACTGGTGTACAATCT 599
                      ********* **************************************************

consensus_6404#0      GCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAACAGCAGCTGTTGGAGCTGCT 660
consensus_6404#1      GCTGAAGAAGAACGGTATCGAGGTGGGGGATGAGCTGAAGCAGCAGCTGTTGGAGCTGCT 659
                      *************************************** ********************

consensus_6404#0      CTGCTTCTACAACCACGAGGACACGCTGCCGGAACAGTTCATCGAGGAGCGTTGGTTCCG 720
consensus_6404#1      CT---------------------------------------------------------- 661
                      **                                                          

consensus_6404#0      CCAGGGAACGGTTGGCCGCGAACGGCAGCGCAAAACGTGGAAAGACTTCGAGCTGGCGGA 780
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      GGAACTGTTCCACGGGCTGGAATCGAAACGGTCCGAGCACTACTGTGCCATGATCCGCGG 840
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      CATGGCACGTTTCTTCCAGGTCGAGAAAGCTTGGGCCCTGTACCAGGAGACGGTGGAGAA 900
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      GGGCATCGAGCTCGACACGAACACGTTCAACAGTTTGCTGCACATCGCCTCGTTCCTGAA 960
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      GGAAAGCTACGACAAGCGGTGGGATCTGGTGTGCGAAGTTATGACTACGATGAAGCAGCA 1020
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      GGGACTGCGGCCGAACCTCGGTACGCTGAACGGCATCCTGCAGACGGTGACAACGATCGG 1080
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      TGGGTACAATCATCCGCGCACGTACGCGCTCAAAACGTTGGCCGAGTTTAAGCAGCTCGG 1140
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      TATCGAACCGTCCCTGGCGAGCTGGTACTACATGCTGGTCATCTTCTGTCGCGAACGGGG 1200
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      CCCGGTCAGCCACGTGCTGCACGACATTATGAACGAGATCGAGGGCAAAGAGTTTACGAT 1260
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      CCAGGATCCGAAGGATACGTTCTTCTTCGTGACGGCGATGGACGTGTGCCGCAACCATCT 1320
consensus_6404#1      ------------------------------------------------------------
                                                                                  

consensus_6404#0      GCACGA 1326
consensus_6404#1      ------