These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CTGGAGTAGACTGTGGAAGGCAGTAGTCACAACACGGTCCATAGCAAGGATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACCAGCCTGCCCTGCCAGGTCCCAAACCAGTCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGATCATCTGCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCTGGGCAATCCGTAACGCTGACCGGTACGCACCGGTCGAGGCGCCACTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTCGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGGTAATAAAGCAGATGTTATATCGCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATTTTCCCGGGG] [+] EMBL CNS098TH [CTGGAGTAGACTGTGGAAGGCAGTAGTCACAACACGGTCCATAGCAAGGATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACCAGCCTGCCCTGCCAGGTCCCAAACCAGTCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGATCATCTGCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCTGGGCAATCCGTAACGCTGACCGGTACGCACCGGTCGAGGCGCCACTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTCGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGGTAATAAAGCAGATGTTATATCGCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATTTTCCCGGGG] consensusID : consensus_6408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 579 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAGGATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT-GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGTAATAAAGCAGATGTTATATCGCATCAT] [+] EMBL BM590047 [CCGCGGACGCGTGGGCGGACGCGTGGGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAGGATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGTAATAAAGCAGATGTTATATCGCATCAT] [+] EMBL BM637778 [ ccGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAGGATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGATGGGAGTTCGAAATAACGGGCG ] [+] EMBL BM582754 [ ccgGTCACAACACGGTCCATAGCAAGAATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAGTGTTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCGTACGAAGTACCGGAGCATCTACGCAATGGCTGCAACAACATTAACACATCCTGTCCGCTGACGGCCGGGCAATCCGTAACACTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCTACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGATA ] [+] EMBL BM610627 [ ccgCGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGTAATAAAGCAGATGTTATATCGCATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6408#0 ---------CTGGAGTAGAC---TGTGGAAGGCAGTAGTCACAACACGGTCCATAGCAAG 48 consensus_6408#1 CCGCGGACGCGTGGGCGGACGCGTGGGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAG 60 * * * *** ** ** ** ****** *** **************** consensus_6408#0 GATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAG 108 consensus_6408#1 GATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAG 120 ***************** ****************************************** consensus_6408#0 GGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCG 168 consensus_6408#1 GGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCG 180 ************************************************************ consensus_6408#0 GGATGCACCAGCCTGCCCTGCCAGGTCCCAAACCAGTCGGACTTTAACTTTAGCGTGCGC 228 consensus_6408#1 GGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGC 240 ******** ******************** ***** ************************ consensus_6408#0 TTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGT 288 consensus_6408#1 TTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGT 300 ************************************************************ consensus_6408#0 CTGTTCCTGCCCTACGAGGTACCGGATCATCTGCGCAATGGCTGCAACAACATTAACACT 348 consensus_6408#1 CTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACT 360 ************************** ***** *************************** consensus_6408#0 TCCTGTCCGCTGACGGCTGGGCAATCCGTAACGCTGACCGGTACG-CACCGGTCGAGGCG 407 consensus_6408#1 TCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCT 420 ***************** *************************** ************* consensus_6408#0 CCACTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTG 467 consensus_6408#1 CCGCTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTG 480 ** ********************************************************* consensus_6408#0 GCCGTTTGTTTCGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGG 527 consensus_6408#1 GCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGG 540 *********** ************************************************ consensus_6408#0 TTACACAAGGGGTAATAAAGCAGATGTTATATCGCATCATAAAAAAAAAAAAAAAAAAAA 587 consensus_6408#1 TTACACAAGGG-TAATAAAGCAGATGTTATATCGCATCAT-------------------- 579 *********** **************************** consensus_6408#0 AAAAAAAAAAGGCCACATTTTCCCGGGG 615 consensus_6408#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||