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Anopheles gambiae
cluster # 6411 cluster # 6411       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6411#0 length = 909 sequences # 4  
consensus_6411#1 length = 410 sequences # 1  

consensusID : consensus_6411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 909
fasta sequence
                              [CCGCACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCCTTTAATCTTATATTGTTCCAAATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGCCTACACTATGATGCAAAATACGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAAACAGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAAAAAATAGAAATAAATTAAGCGTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGATAGATGAGAGACTACTAGAGACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTACACCCAACACACGATCACATTCACACATACACATATACAACCACACACACA--CCCCCAAGAAACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTAATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA]

[+] EMBL BM601051             [CCGCACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCCTTTAATCTTATATTGTTCCAAATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGCCTACACTATGATGCAAAATACGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAAACAGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAA                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AGA282220            [                    AGAGAGATTAGGCAGGTGCCCCCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AGA283932            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTTAGAAAGTTAGAAGTAAAGAAAACAAACCGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAAAAAATAGAAATAAATTAAGCGTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGATAGATGAGAGACTACTAGAGACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTACACCCAACACACGATCACATTCACACATACACATATACAACCACACACACA  CCCCCAAGAAACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTAATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA]
[-] EMBL AGA280517            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cacccaacACAGCATATACACGATCACATTCACACATACACATATACAACCACACACACACCCCCCCAAGAAACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTATTTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA]


>consensus_6411#0 CCGCACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATG GGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACC GCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCA CTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATA TGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTT CATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGT TTTCTTATCTAGCTTATTTGTTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCC TTTAATCTTATATTGTTCCAAATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGC CTACACTATGATGCAAAATACGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAA ACAGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAA AAAATAGAAATAAATTAAGCGTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGA TAGATGAGAGACTACTAGAGACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTAC ACCCAACACACGATCACATTCACACATACACATATACAACCACACACACACCCCCAAGAA ACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAA TTAAATACGATGATGCATTAATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGAT GATAAAAAA



consensusID : consensus_6411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence
                              [AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTTTCGTTTTTTTTTCAGTTTTCGTCATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAG]

[+] EMBL AGA285228            [AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTTTCGTTTTTTTTTCAGTTTTCGTCATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAG]


>consensus_6411#1 AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAA AGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAAT GAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGG AAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTT TCGTTTTTTTTTCAGTTTTCGTCATATGTTGCTCATATCTACACGTGTATCTTCCGTTTT TTCTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATT TACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6411#0      ----------------------------------------CCGCACATATTAGGGCGCAA 20
consensus_6411#1      AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAA 60
                                                                 *****************

consensus_6411#0      AGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAAT 80
consensus_6411#1      AGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAAT 120
                      ************************ ***********************************

consensus_6411#0      GAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGG 140
consensus_6411#1      GAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGG 180
                      ************************************************************

consensus_6411#0      AAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTC 200
consensus_6411#1      AAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTT 240
                      *********************************************************** 

consensus_6411#0      TCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGT 260
consensus_6411#1      TCGTTTTTTTTTCAGTTTTCGTCA--------------TATGTTGCTCATATCTACACGT 286
                      ************************              **********************

consensus_6411#0      GTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCAC 320
consensus_6411#1      GTATCTTCCGTTTTTTCTTC--------ATTCATTTGTTTCATTTAGCATTTAGCTTCAC 338
                      ********************        ********************************

consensus_6411#0      TCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTG 380
consensus_6411#1      TCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTG 398
                      ************************************************************

consensus_6411#0      TTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCCTTTAATCTTATATTGTTCCA 440
consensus_6411#1      TTGCCTTTCAAG------------------------------------------------ 410
                      ************                                                

consensus_6411#0      AATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGCCTACACTATGATGCAAAATA 500
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAAACAGAAATTTTTATACCAAA 560
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAAAAAATAGAAATAAATTAAGC 620
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      GTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGATAGATGAGAGACTACTAGAG 680
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      ACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTACACCCAACACACGATCACATT 740
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CACACATACACATATACAACCACACACACACCCCCAAGAAACAGGCATAAACGCTACGAG 800
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTA 860
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      ATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA 909
consensus_6411#1      -------------------------------------------------
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)