|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence
[CCGCTCAAATGGTTGATTAAACTTTAAAAGTCACGTCGTCGCCGAACCTGGCTGGTTCGTTACATTCGCATTTCCATTTCTTTGGCTTCTACAGGGTATTTGTAACGACGGAAGAGGAGGAGGAGGAGAAGGAAGCAGAATAGAGCGAAAGAAGAATAAACAAAACATTGTAAACCAATAGACAAGTAAAGCCTAGAATAGTGTGCAAATGTGTAACGAACAAAAACAAGAAGCGGAAAGCGAGCGCAAAGAATAGGTAAAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTTGTGTTTTCCTCTTTCTCTTTCCTTTGTTTTATTCCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGG-AGTGAGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTTTCTCTCTTAGTATGACTGATTCGACATTAGTAGCAAGGAAATGAGTGTG-AGGATGCGTGCGTGGTTTTAGCAACGAGAAGGACGAAAGTGTGCGATCGTATCGTGGGCATGTGTTACAATGATTGTGGTGTGTCTGTGGGTTTTAAACGAGAATGGGAGGGTTGAGTAACGACCATGCGAAGTCCGAAAGGATGCGGAACGGAATANGAATATTANGTCTT]
[+] EMBL BM642289 [CCGCTCAAATGGTTGATTAAACTTTAAAAGTCACGTCGTCGCCGAACCTGGCTGGTTCGTTACATTCGCATTTCCATTTCTTTGGCTTCTACAGGGTATTTGTAACGACGGAAGAGGAGGAGGAGGAGAAGGAAGCAGAATAGAGCGAAAGAAGAATAAACAAAACATTGTAAACCAATAGACAAGTAAAGCCTAGAATAGTGTGCAAATGTGTAACGAACAAAAACAAGAAGCGGAAAGCGAGCGCAAAGAATAGGTAAAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTTGTGTTTTCCTCTTTCTCTTTCCTTTGTTTTATTCCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGG A AGTGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTGAATCTCAGCATAGAAAGTGATCGAGGAGCTTTCTCTCTTAGTACGACTGATTCGACATTAGTAGCAAGGAAATGAGTGTG AGGATGCGTGCGTGGTTTTAGCAACGAGAAGGACGAAA ]
[+] EMBL BX627379 [ GAGCGCAAAGAATAGGT AAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTTGTGTTTTCCACTTTCTCTTTCCTTTGTTTTATTCCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGGAAGTGAGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTTTCTCTCTTAGTATGACTGATTCGACATTAGTAGCAAGGAAATGAGTGTG AGGATGCGTGCGTGGTTTTAGCAACGAGAAGGACGAAAGTGTGCGATCGTATCGTGGGCATGTGTTACAATGATTGTGGTGTGTCTGTGGGTTTTAAACGAGAATGGGAGGGTTGAGTAACGACCATGCGAAGTCCGAAAGGATGCGGAACGGAATANGAATATTANGTCTT]
[+] EMBL BX619902 [ TGAGGTATGTNN AGTGAGAGAGAGAGTCTTATCCGCTTATC AACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTTGTTCATGTGTGTTTGTGAGTGTGTAAGAGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTTTCTCTCTTAGTATGACTGATTCGACATTAGTAGCAAGG NNTGAGTGTGTAGGATG ]
consensusID : consensus_6428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence
[CCCCCGNGGTTAAAGGCAAAACAAGAAGCGGACAAGCGAGCGCAAAGAATAGGTAAAAACAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTCTGTGTTTTCCACTTATCTCTTTCCTATATGTATTCATTACCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGAAAGTGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTATATGTTCATGTGTGTTTGTGAGTGTGTAAGCAGAGGTTAATCACAGCATAGGAAGTGATCGAGGAGCTTATCTCTCTTCANNNTGCACTGATTACGACCATTCAATAGCAACGGCAACNTCGACTGTGAGGATGCGTGCCGCTGGTCTACAAGCCNACGCAAGAAGGACCGAAAGTGTGCGATCCGTCATCNCGAGCACTGCTGTCACANATTGACTACAGGNGGGCTGGNNGGTACTAGGNCAGCGGCTACACAAAAAAACCGCACACAANTGGNGCACACGGGTCTCGAGTCAAACCGCAACCCANTGGCCCGACACGTCCCCGCACAACGGCTGCCCCAAACCNGCACACCTNACGGGACATCATCACGGTCCTCCAATACCACCGCCANNCCNAANTNG]
[+] EMBL AL694830 [CCCCCGNGGTTAAAGGCAAAACAAGAAGCGGACAAGCGAGCGCAAAGAATAGGTAAAAACAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACTAAAACAGTACATTAGAGCAGAAAAGTGTTGTAGTTGTGAGTATCTTCTGTGTTTTCCACTTATCTCTTTCCTATATGTATTCATTACCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGAAAGTGAGAGAGAGTCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTATATGTTCATGTGTGTTTGTGAGTGTGTAAGCAGAGGTTAATCACAGCATAGGAAGTGATCGAGGAGCTTATCTCTCTTCANNNTGCACTGATTACGACCATTCAATAGCAACGGCAACNTCGACTGTGAGGATGCGTGCCGCTGGTCTACAAGCCNACGCAAGAAGGACCGAAAGTGTGCGATCCGTCATCNCGAGCACTGCTGTCACANATTGACTACAGGNGGGCTGGNNGGTACTAGGNCAGCGGCTACACAAAAAAACCGCACACAANTGGNGCACACGGGTCTCGAGTCAAACCGCAACCCANTGGCCCGACACGTCCCCGCACAACGGCTGCCCCAAACCNGCACACCTNACGGGACATCATCACGGTCCTCCAATACCACCGCCANNCCNAANTNG]
consensusID : consensus_6428#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[GCGGAAAGCGAGCGCAAAGACTAGGTAAAAAAATGTAGAACTCAGCAAAACTAAACGGGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACACTAAAACAGTACATAAGAGCAGAAAAGTGTCGTAGTGGTGAGTATCTCTGTGTAGCCCTCTCACTCTCACCTGAGTGGCATCCCGGGACATGGCATATCGTCATTAGA]
[+] EMBL BX613274 [GCGGAAAGCGAGCGCAAAGACTAGGTAAAAAAATGTAGAACTCAGCAAAACTAAACGGGTAAAAGGAGACAAGCGAACAAAACAGCACACACACACACTAAAACAGTACATAAGAGCAGAAAAGTGTCGTAGTGGTGAGTATCTCTGTGTAGCCCTCTCACTCTCACCTGAGTGGCATCCCGGGACATGGCATATCGTCATTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6428#1 ------------------------------------------------------------
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 CCGCTCAAATGGTTGATTAAACTTTAAAAGTCACGTCGTCGCCGAACCTGGCTGGTTCGT 60
consensus_6428#1 ------------------------------------------------------------
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 TACATTCGCATTTCCATTTCTTTGGCTTCTACAGGGTATTTGTAACGACGGAAGAGGAGG 120
consensus_6428#1 ------------------------------------------------------------
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 AGGAGGAGAAGGAAGCAGAATAGAGCGAAAGAAGAATAAACAAAACATTGTAAACCAATA 180
consensus_6428#1 -------------------------CCCCCGNGGTTAAAGGCAAAACAAGAAGCGGACAA 35
consensus_6428#2 ----------------------------------------------------GCGGA-AA 7
consensus_6428#0 GACAAGTAAAGCCTAGAATAGTGTGCAAATGTGTAACGAACAAAAACAAGAAGCGGA-AA 239
***** **
consensus_6428#1 GCGAGCGCAAAGAATAGGTAAAAACAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAG 95
consensus_6428#2 GCGAGCGCAAAGACTAGGTAAAAAAA--TGTAGAACTCAGCAAAACTAAACGGGTAAAAG 65
consensus_6428#0 GCGAGCGCAAAGAATAGGTAAAAAAAATTGTAGAACTCAGCAAAACTAAACGTGTAAAAG 299
************* ********** * ************************ *******
consensus_6428#1 GAGACAAGCGAACAAAACAGCACACACACAC--TAAAACAGTACATTAGAGCAGAAAAGT 153
consensus_6428#2 GAGACAAGCGAACAAAACAGCACACACACACACTAAAACAGTACATAAGAGCAGAAAAGT 125
consensus_6428#0 GAGACAAGCGAACAAAACAGCACACACACAC--TAAAACAGTACATTAGAGCAGAAAAGT 357
******************************* ************* *************
consensus_6428#1 GTTGTAGTTGTGAGTATCTTCTGTGTTTTCCACTTATCTCTTTCCTATATGTATTCATTA 213
consensus_6428#2 GTCGTAGTGGTGAGTATCT-CTGTGTAGCCCTCTCA-CTCTCACCTGAGTGGCATC---- 179
consensus_6428#0 GTTGTAGTTGTGAGTATCT-TTGTGTTTTCCTCTTT-CTCTTTCCTTTGTTTTATT---- 411
** ***** ********** ***** ** ** **** *** * *
consensus_6428#1 CCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGAAA-GTGAGAGAGAG 272
consensus_6428#2 CCGGGACATGGCATATCGTCATTAGA---------------------------------- 205
consensus_6428#0 CCGTGACATTGCATATCGTCATTAGATCACTCTTTGAGGTATGTGGAGTGAGAGAGAGAG 471
*** ***** ****************
consensus_6428#1 TCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTATATGTTCAT 332
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 TCTTATCCGCTTATCAAACGCCCCCAGGCATAGGAAATCCGTGTAATTGTTT--GTTCAT 529
consensus_6428#1 GTGTGTTTGTGAGTGTGTAAGCAGAGGTTAATCACAGCATAGGAAGTGATCGAGGAGCTT 392
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 GTGTGTTTGTGAGTGTGTAAG-AGAGGTTAATCTCAGCATAGGAAGTGATCGAGGAGCTT 588
consensus_6428#1 ATCTCTCTTCANNNTGCACTGATTACGACCATTCAATAGCAACGGCAACNTCGACTGTGA 452
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 -TCTCTCTT-AGTATG-ACTGATT-CGACA--TTAGTAGCAAGGA----AATGAGTGTGA 638
consensus_6428#1 GGATGCGTGCCGCTGGTCTACAAGCCNACGCAAGAAGGACCGAAAGTGTGCGATCCGTCA 512
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 GGATGCGTGC--GTGGTTTT---AGCAACG--AGAAGGAC-GAAAGTGTGCGATC--GTA 688
consensus_6428#1 TCNCGAGCACTGCTGTCACANATTGACTACAGGNGGGCTGGNNGGTACTAGGNCAG--CG 570
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 TCGTGGGCA----TGTGTTACAATGATTGT-GGTGTGTCTGTGGGTTTTAAACGAGAATG 743
consensus_6428#1 GCTACACAAAAAAACCGCACACAANTGGNGCACACGGGTCTCGAGTCAAACCGCAACCCA 630
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 GGAGGGTTGAGTAACGAC-CATGCGAAGTCCGAAAGGATGCGGAACGGAATANGAATATT 802
consensus_6428#1 NTGGCCCGACACGTCCCCGCACAACGGCTGCCCCAAACCNGCACACCTNACGGGACATCA 690
consensus_6428#2 ------------------------------------------------------------
consensus_6428#0 ANGTCTT----------------------------------------------------- 809
consensus_6428#1 TCACGGTCCTCCAATACCACCGCCANNCCNAANTNG 726
consensus_6428#2 ------------------------------------
consensus_6428#0 ------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||