These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCCCACGCGTCCGCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGTGCCGAAGGGCTTTATCGTGTGGGGACCGGGCTGCCAGATCATGGACCTGAACCCGGTAGCTAAGGACGTGATGCGGCTGTTCAGCAAGGAGCGGTTCGTGCCGTGCAGCCCGAAGCAACCGCTCACGTCGATCGAGCAGCACTTTGACAACGACACGGTGCTGGTGCGGTACCACCGGGACCAGCTGGACGCGTTCATGCCGCACTACATGCGGTACGTCCGGTGCTGCTACCAGAGCATCGAGCGGGCCGGCACGAAGGATAAGGCTGATAAGAATTTCTGGGTGGGGGATTGTGTCCCGTTCAACGAATCGTTCCTATTGCCACCGTCGGTACGGAACGGTGTGCTGGTACGCTGCAAGGCCGGTGTGTCCGAGTCGAGCAAGTCGAAGAAGGCGATCTATACCAACGTGCACGCACTGATACGCCCGCAGCCGAGCGTGCGCGAGCGTATGGACAAGTTCCGGGGGAGGACGGAGAAGCGACCGCTCAGCGTGCTGATGATCGGCATCGACAGCATATCGCGGCTCAATCTCATCCGTGCTATGCCCCACACGGCCCAGCATCTGTACGATACGGGCTGGTTTGAGCTCAAGGGATACAAT] [+] EMBL BM639476 [CCGCCCACGCGTCCGCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGTGCCGAAGGGCTTTATCGTGTGGGGACCGGGCTGCCAGATCATGGACCTGAACCCGGTAGCTAAGGACGTGATGCGGCTGTTCAGCAAGGAGCGGTTCGTGCCGTGCAGCCCGAAGCAACCGCTCACGTCGATCGAGCAGCACTTTGACAACGACACGGTGCTGGTGCGGTACCACCGGGACCAGCTGGACGCGTTCATGCCGCACTACATGCGGTACGTCCGGTGCTGCTACCAGAGCATCGAGCGGGCCGGCACGAAGGATAAGGCTGATAAGAATTTCTGGGTGGGGGATTGTGTCCCGTTCAACGAATCGTTCCTATTGCCACCGTCGGTACGGAACGGTGTGCTGGTACGCTGCAAGGCCGGTGTGTCCGAGTCGAGCAAGTCGAAGAAGGCGATCTATACCAACGTGCACGCACTGATACGCCCGCAGCCGAGCGTGCGCGAGCGTATGGACAAGTTCCGGGGGAGGACGGAGAAGCGACCGCTCAGCGTGCTGATGATCGGCATCGACAGCATATCGCGGCTCAATCTCATCCGTGCTATGCCCCACACGGCCCAGCATCTGTACGATACGGGCTGGTTTGAGCTCAAGGGATACAAT] consensusID : consensus_6432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGCGTAGGCTTGTGCGAATTCTGTTGGGGCCCGCTGCCGCACAGACGCTCGATGTTTTTGCTGTGACGCGCGCGCTGTGATGATACATGTGTGTGTGTGTGAGAGTGTGTGTTTGATGCTGCAGCTCTCGCGTTCTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCTGTTTTGCGTCACCGTGTACCTGTACTTCATGACTGGGACCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGATCAAATTGCAACAAAATGCACCAATAACAACGAGCCTGATGCTGCTGCACTCGCGAGCGCAGACGAACTGCAACTCACCTTCAATCGAATTGTTCCGATCGTTCCCCCAAACCAATGCCTCCACTACTACCACCATCATCACCACTACCGGCACCACCACCAACACCACTACCACCAACAACATTGTCCCTGCGATCAACAACAA] [+] EMBL BM620234 [CCGCGTAGGCTTGTGCGAATTCTGTTGGGGCCCGCTGCCGCACAGACGCTCGATGTTTTTGCTGTGACGCGCGCGCTGTGATGATACATGTGTGTGTGTGTGAGAGTGTGTGTTTGATGCTGCAGCTCTCGCGTTCTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCTGTTTTGCGTCACCGTGTACCTGTACTTCATGACTGGGACCGATGTGACCCAGATGATCGTGACCATACCGGCGGACGATGCGGACCTACCCGGACCAAAAGATCAAATTGCAACAAAATGCACCAATAACAACGAGCCTGATGCTGCTGCACTCGCGAGCGCAGACGAACTGCAACTCACCTTCAATCGAATTGTTCCGATCGTTCCCCCAAACCAATGCCTCCACTACTACCACCATCATCACCACTACCGGCACCACCACCAACACCACTACCACCAACAACATTGTCCCTGCGATCAACAACAA] consensusID : consensus_6432#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [CCGGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACAACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTCTTAGTAAATTGTCCTTTGTGAGGTGTTCGTGTAGTATCAATCAGTGTGTTCGTTGTATAGACAGATTTAATGCCATGTGGGGTAGGTTGGGAGGCAACTGTCAGTGTCCAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAATACTCGCCATCGGGCTGCTGTTTTGCGTCA] [+] EMBL BM626820 [CCGGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACAACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTCTTAGTAAATTGTCCTTTGTGAGGTGTTCGTGTAGTATCAATCAGTGTGTTCGTTGTATAGACAGATTTAATGCCATGTGGGGTAGGTTGGGAGGCAACTGTCAGTGTCCAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCGGTGGATCGGTGCGGCCGGGCGCCAATACTCGCCATCGGGCTGCTGTTTTGCGTCA] consensusID : consensus_6432#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [CCGCGCCAAGTTGCCAAGCTCTGTGCGTGCACTGCGTCTGCAAAAGCGGGCCCGTCCCCTGGTGTGCGTGTGTCCCTCCTTCGCTCCAGGATGTGCAAGGAAGTGAAGGCTCCTATCGCTGTCGTCGTCCCAGTGCTGTGCTAAATGCGTGTAGCGCATAAAAACATCTAAACGAAACGTCACGGTCCCGTCAATCCGAAGGTGGCGATGGCAATCCTTTAAAAAAGCTACCCACAACCTTTGCTCCTTGATTGGCTGCTAGCTGGTACCGATGGTCCGGATGGTTCTTCGGGCTGCCGGAGCTACTTCCTGCGCTGCGTCCTCTGTGAGCGTACTGTGAAAGCTGCGTACTGTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCT] [+] EMBL BM655466 [CCGCGCCAAGTTGCCAAGCTCTGTGCGTGCACTGCGTCTGCAAAAGCGGGCCCGTCCCCTGGTGTGCGTGTGTCCCTCCTTCGCTCCAGGATGTGCAAGGAAGTGAAGGCTCCTATCGCTGTCGTCGTCCCAGTGCTGTGCTAAATGCGTGTAGCGCATAAAAACATCTAAACGAAACGTCACGGTCCCGTCAATCCGAAGGTGGCGATGGCAATCCTTTAAAAAAGCTACCCACAACCTTTGCTCCTTGATTGGCTGCTAGCTGGTACCGATGGTCCGGATGGTTCTTCGGGCTGCCGGAGCTACTTCCTGCGCTGCGTCCTCTGTGAGCGTACTGTGAAAGCTGCGTACTGTAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCGGCGCGATGCTGGCGGCGGTGGCCGAGTGGCCGGCGGGCTGCTGCACCCCGGTGGATCGGTGCGGCCGGGCGCCAGTACTCGCCATCGGGTTGCT] consensusID : consensus_6432#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [CCGCCCACGCGTCCGCGATTCACCCGATCAACGTCAACAAGAGAGCGTGCTGCTGTGACGCTTCTCCGTTGGTGCGTATGGTTCAACGCGCAGCGAGATGTGCTGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACGACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTTTCAGTAAATTGTCCTTTGTGAGCTGTTCGTGTAGTATCAATCAGTGTGTCCGGTGTGTAGACAGATTTAATGTCATGTGGGGTAGGTTGGGAGGCAACTGTCCGTGGCAAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCG] [+] EMBL BM652904 [CCGCCCACGCGTCCGCGATTCACCCGATCAACGTCAACAAGAGAGCGTGCTGCTGTGACGCTTCTCCGTTGGTGCGTATGGTTCAACGCGCAGCGAGATGTGCTGTGGCATCTCTGTTGGGTTGGCGTATGTCGAGATAACGTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAAGACGTCTCGTGTGTGTGTGTGCCCTCAGTGCCGAGATAGCACGACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGGATATAGCGTGACCCGGGCGTATTTAGTGTCCCTTTCAGTAAATTGTCCTTTGTGAGCTGTTCGTGTAGTATCAATCAGTGTGTCCGGTGTGTAGACAGATTTAATGTCATGTGGGGTAGGTTGGGAGGCAACTGTCCGTGGCAAAATGTGAAAAGCAATGAGCATCCGCTATGAAACCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAACAATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6432#1 ------------------------------------------------------------ consensus_6432#3 ------------------------------------------------------------ consensus_6432#2 ------------------------------------------------------------ consensus_6432#4 CCGCCCACGCGTCCGCGATTCACCCGATCAACGTCAACAAGAGAGCGTGCTGCTGTGACG 60 consensus_6432#0 ------------------------------------------------------------ consensus_6432#1 ------------------CCGCGTAGGCTTGTGCGAATTCTGTTGGGGC-CCGCTGCCGC 41 consensus_6432#3 ------------------CCGCGCCAAGTTGC-CAAGCTCTGTGCGTGCACTGCGTCTGC 41 consensus_6432#2 -----------------------------------------CCGGTGGCATCTCTGTTGG 19 consensus_6432#4 CTTCTCCGTTGGTGCGTATGGTTCAACGCGCAGCGAGATGTGCTGTGGCATCTCTGTTGG 120 consensus_6432#0 ------------------CCGCCCACGCGTCCGCGATGTGACCCAGATGATCGTGACCAT 42 consensus_6432#1 ACAGACGCTCGATGTTTTTGCTGTGACGCGCGCGCTGTGATGATACATGTGTGTGTGTGT 101 consensus_6432#3 AAAAGCG---GGCCCGTCCCCTGGTGTGCGTGTGTCCCTCCTTCGCTCCAGGATGTGCAA 98 consensus_6432#2 GTTGGCGTATGTCGAGATAAC-GTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAA 78 consensus_6432#4 GTTGGCGTATGTCGAGATAAC-GTCCTGCGAGAGTCTGTAATGAGCGTTTAATCACGAAA 179 consensus_6432#0 ACCGGCGGACGATGCGGACCTACCCGGACCAAAAGTGCCGAAGGGCTTTATCGTGTGGGG 102 ** * * * * consensus_6432#1 GAGAGTGTGTGTTTGATGCTGCAGCTCTCG-CGTTCTAGCAATGAGCATCCGCTATGAAA 160 consensus_6432#3 GGAAGTGAAGGCTC----CTATCGCTGTCGTCGTCCCAGTGCTGTGC--------TAAAT 146 consensus_6432#2 GACGTCTCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTCAGTGC---CGAGATAGCA 135 consensus_6432#4 GACGTCTCG----------------TGTGTGTGTGTGCCCTCAGTGC---CGAGATAGCA 220 consensus_6432#0 ACCGGGCTG----CCAGATCATGGACCTGAACCCGGTAGCTAAGGACG--TGATGCGGCT 156 * * * consensus_6432#1 CCATCGGTGTTACAGACACTGCTCGAGCCGGCGACCACCGCACTGGCGGTGCTCAGTAGA 220 consensus_6432#3 GCGTGTAGCGCATAAAAACATCTAAACGAAACG-TCACGGTCCCGTCAATCCGAAGGTGG 205 consensus_6432#2 CAACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGG 195 consensus_6432#4 CGACCGACGGAACAAGTCAGTGGCAGGAAGACGCAGTTTGTTATGGTTTGGTGACCCAGG 280 consensus_6432#0 GTTCAGCAAGGAGCGGTTCGTGCCGTGCAGCCCGAAGCAACCGCTCACGTCGATCGAGCA 216 * * consensus_6432#1 AAGCAACAGCATCATCACAGA-CCATCGCCAACCTGCAC-CAACAATCGGCGCGATGCTG 278 consensus_6432#3 CGATGGCAATCCTTTAAAAAAGCTACCCACAACCTTTGCTCCTTGATTGGCTGCTAGCTG 265 consensus_6432#2 ATATAGCGTGACCCGGGCGTATTTAGTGTCC-CTCTTAGTAAATTGTCCTTTGTGAGGTG 254 consensus_6432#4 ATATAGCGTGACCCGGGCGTATTTAGTGTCC-CTTTCAGTAAATTGTCCTTTGTGAGCTG 339 consensus_6432#0 GCACTTTGACAACGACACGGTGCTGGTGCGGTACCACCGGGACCAGCTGGACGCGTTCAT 276 consensus_6432#1 GCGGCGGTGG-CCGAGTGGC-CGGCGGG--CTGCTGCACCCGGTGGAT-CGGTGCGGCCG 333 consensus_6432#3 GTACCGATGGTCCGGATGGTTCTTCGGG--CTGCCGGAGCTACTTCCTGCGCTGCGTCCT 323 consensus_6432#2 TTCGTGTAGTATCAATCAGTGTGTTCGT--TGTATAGACAGATTTAATGCCATGTGGGGT 312 consensus_6432#4 TTCGTGTAGTATCAATCAGTGTGTCCGG--TGTGTAGACAGATTTAATGTCATGTGGGGT 397 consensus_6432#0 GCCGCACTA---CATGCGGTACGTCCGGTGCTGCTACCAGAGCATCGAGCGGGCCGGCAC 333 * * * * consensus_6432#1 G-GCGCCAGTACT--CGCCATCGGGTTGCTGTTTTGC---GTCACCGTGTACCTGTACTT 387 consensus_6432#3 CTGTGAGCGTACTG-TGAAAGCTGCGTACTGTAGCA----ATGAGCATCCGCTATGAAAC 378 consensus_6432#2 AGGTTGGGAGGCAACTGTCAGTGTCCAAATGTGAAAAGCAATGAGCATCCGCTATGAAAC 372 consensus_6432#4 AGGTTGGGAGGCAACTGTCCGTGGCAAAATGTGAAAAGCAATGAGCATCCGCTATGAAAC 457 consensus_6432#0 GAAGGATAAGGCTGATAAGAATTTCTGGGTGGGGGATTGTGTCCCGTTCAACGAATCGTT 393 * ** * * * consensus_6432#1 C--ATGACTGGGACCGATG-TGACCCAGATGATCGT-GACCATACCGGCGGACGATGCGG 443 consensus_6432#3 C--ATCGGTGTTACAGACACTGCTCGAGCCGGCGAC-CACCGCACTGGCGG-TGCTCAGT 434 consensus_6432#2 C--ATCGGTGTTACAGACACTGCTCGAGCCGGCGAC-CACCGCACTGGCGG-TGCTCAGT 428 consensus_6432#4 C--ATCGGTGTTACAGACACTGCTCGAGCCGGCGAC-CACCGCACTGGCGG-TGCTCAGT 513 consensus_6432#0 CCTATTGCCACCGTCGGTACGGAACGGTGTGCTGGTACGCTGCAAGGCCGGTGTGTCCGA 453 * ** * * * * * * * *** * * consensus_6432#1 ACCTACCCGGACCAAAAGATCAAATTG-CAACAAAATGCACCAATAACAACGAGCCTGAT 502 consensus_6432#3 AGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAA---CAATCGGCGCGAT 491 consensus_6432#2 AGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAA---CAATCGGCGCGAT 485 consensus_6432#4 AGAAAGCAACAGCATCATCACAGACCATCGCCAACCTGCACCAA---CAATCG------- 563 consensus_6432#0 GTCGAGCAAGTCGAAGAAGGCGATCTA-TACCAACGTGCACGCAC--TGATACGCCCGCA 510 * * * * * *** ***** * * consensus_6432#1 GCTG-CTGCACTCGC-GAGCG--CAGACGAACTGCAACTCACCTTCAATCGAATTGTTCC 558 consensus_6432#3 GCTGGCGGCGGTGGCCGAGTG-GCCGGCGGGCTGCTGCACCCC----GGTGGATCGGTGC 546 consensus_6432#2 GCTGGCGGCGGTGGCCGAGTG-GCCGGCGGGCTGCTGCACCCG-----GTGGATCGGTGC 539 consensus_6432#4 ------------------------------------------------------------ consensus_6432#0 GCCG--AGCGTGCGC-GAGCGTATGGACAAGTTCCGGGGGAGGAC--GGAGAAGCGACCG 565 consensus_6432#1 GATCGTTCCCCCAAACCAATGCCTCCACTACTACCACCATCATCACCACTACCGGCACCA 618 consensus_6432#3 GGCCGGGCGCCAGTACTCGCCATCGGGTTGCT---------------------------- 578 consensus_6432#2 GGCCGGGCGCCAATACTCGCCATCGGGCTGCTGTTTTGCGTCA----------------- 582 consensus_6432#4 ------------------------------------------------------------ consensus_6432#0 CTCAGCGTGCTGATGATCGGCATCGACAGCATATCGCGGCTCAATCTCATCCGTGCTATG 625 consensus_6432#1 CCACCAACACCACTACCACCAACAACATTGTCCCTGCGATCAACAACAA--------- 667 consensus_6432#3 ---------------------------------------------------------- consensus_6432#2 ---------------------------------------------------------- consensus_6432#4 ---------------------------------------------------------- consensus_6432#0 CCCCACACGGC-CCAGCATCTGTACGATACGGGCTGGTTTGAGCTCAAGGGATACAAT 682 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||