These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence [AAATTACTTTGTGTTTATTGGTAATTATACTGAAAAAAGATTCGTTTTATTTCGTGATTAATAATTACTACATCTGTTCATTGTACTGTAGATTCCTGAACACTAGAACACACAGTCGTTGCCACCAGACGTCTGGTCTGGTGAAGTAATGTGCTGTTATCGTTAAATATCTTACCATTAATGTATGTAATCTACCTGTAGAGGTAGACGTTTTCATAAAACGAACAAAAATACATTCAAAGAAACGATAACTCCAGAAGATTTGCATCGCCACGTGACGTGAACCCTACAAACCGGTGGTCATTATACGAAAAAGATCAAACGAACGTTAACTGGACAAACAAGCAATTATTAAATGCTTCACTGGAATATTAAAAAAATAATTCGAACAAAAATCTCAAAACGTAAGTAATCGATCCAAGGAACCCGACCTGACAACTGTTGTCAGCTCTTTAACAGGGCATGTCTACTTGCGACGGTGCACTTTCCCACCGTAGCGCACCACGAACGCATTCACGTTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGCTCCTTCCAGCCCTGATCGTGGATGCCCGCGCATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCC-TTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCCTCCCGGCTGTAGCAGTACACCCGCTTGTCCTTCCGATGGTCGTCCAGCGTTTTGCGGGCCCAATCGTACGCACCCTGCATTGTTGTCGTAGTTTTTTTTTTTTGTTTTTAAAGTTATCCGACAGCTCCCGGCGCACGATCGCCTCCTCGCAGAACGAGGCCACGCTTTCGCTGTACCGCTTGCCGTGCTTCTTCACCGTCAGTACTGCCCGCTGGACCGCGATCTGGCCGAAGTGAAACCAGGGCGACAGGTTCGAGAGCGCATTTTCGGTCGGATCGTTCCGTTTGTCGTTGAATTTGCCCAACCGCTTCTCGACAAAGGTCTGCAGCGTCTTCACGCCACCGGTGTACCCCGGCGTGGCCCACTCGACAGCCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTGATCGGATCCGCCTCAAAGTTGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTACGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCCGGACGCGTGGGCGG] [+] EMBL CNS093LR [AAATTACTTTGTGTTTATTGGTAATTATACTGAAAAAAGATTCGTTTTATTTCGTGATTAATAATTACTACATCTGTTCATTGTACTGTAGATTCCTGAACACTAGAACACACAGTCGTTGCCACCAGACGTCTGGTCTGGTGAAGTAATGTGCTGTTATCGTTAAATATCTTACCATTAATGTATGTAATCTACCTGTAGAGGTAGACGTTTTCATAAAACGAACAAAAATACATTCAAAGAAACGATAACTCCAGAAGATTTGCATCGCCACGTGACGTGAACCCTACAAACCGGTGGTCATTATACGAAAAAGATCAAACGAACGTTAACTGGACAAACAAGCAATTATTAAATGCTTCACTGGAATATTAAAAAAATAATTCGAACAAAAATCTCAAAACGTAAGTAATCGATCCAAGGAACCCGACCTGACAACTGTTGTCAGCTCTTTAACAGGGCATGTCTACTTGCGACGGTGCACTTTCCCACCGTAGCGCACCACGAACGCATTCACGTTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGCTCCTTCCAGCCCTGATCGTGGATGCCCGCGCATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCC TTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCCTCCCGGCTGTAGCAGTACACCCGCTTGTCCTTCCGATGGTCGTCCAGCGTTTTGCGGGCCCAATCGTACGCACCCTGCATTGTTGTCGTAGTTTTTTTTTTTTGTTTTTAAAGTTATCCG ] [-] EMBL BM584172 [ TGCGCAGGAAGCCGTGCATCTTGCCCTCCTTTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCATCCCGGCTGTAGCAGTACACCCGCTTGTCCTTCCGATGGTCGTCCAGCGTTTTGCGGGCCCAATCGTACGCACCCTGCA GGTTGTCGTAG TTTTTGTTGTGGAAGCAAAAGTTATCCGACAGCTCCCGGCGCACGATCGCCTCCTCGCAGAACGAGGCCACGCTTTCGCTGTACCGCTTGCCGTGCTTCTTCACCGTCAGTACTGCCCGCTGGACCGCGATCTGGCCGAAGTGAAACCAGGGCGACAGGTTCGAGAGCGCATTTTCGGTCGGATCGTTCCGTTTGTCGTTGAATTTGCCCAACCGCTTCTCGACAAAGGTCTGCAGCGTCTTCACGCCACCGGTGTACCCCGGCGTGGCCCACTCGACAGCCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTGATCGGATCCGCCTCAAAGTTGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTACGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCCGGACGCGTGGGCGG] consensusID : consensus_6439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 976 fasta sequence [CCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTAATCGAAACCGCCTCAAAGTCGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTGCGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCGACCTGACACAGCGGGATCCCCATCGGGAGCGCTTTCCGCACCTCGTCGACCCACTTCATCGGCACGCGCAGCGGGCTAAAGTCACACACTACGCCACCGATTTTGTGTTTCTTCACAAACGCCGGCACATTTTCGCCCGCACTACCGCGCAGCAGATGGAACTGGATGTTAAGCTTACGGCACTCTTCGGCGACCTCCTCCAGTCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGGAGGGATCTGCACGGTGCGTGATTCAGTGAGCACTTGATAGAGAAGCGGGAAGCACGAACTAAAAACATAAAACGAAGGTGCAGGAACGCAAGCGAGCAGCGAATCG-TTACCAAACACGCGCGTTTCAACGG] [-] EMBL CNS093LQ [CCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTAATCGAAACCGCCTCAAAGTCGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTGCGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCGACCTGACACAGCGGGATCCCCATCGGGAGCGCTTTCCGCACCTCGTCGACCCACTTCATCGGCACGCGCAGCGGGCTAAAGTCACACACTACGCCACCGATTTTGTGTTTCTTCACAAACGCCGGCACATTTTCGCCCGCACTACCGCGCAGCAGATGGAACTGGATGTTAAGCTTACGGCACTCTTCGGCGACCTCCTCCAGTCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGGAGGGATCTGCACGGTGCGTGATTCAGTGAGCACTTGATAGAGAAGCGGGAAGCACGAACTAAAAACATAAAACGAAGGTGCAGGAACGCAAGCGAGCAGCGAATCG TTACCAAACACGCGCGTTTCAA ] [-] EMBL BM619731 [ CACTGCCGTGCAGCAGATGGAACTGGATGTTAAGCTTACGGCACTCTTCGGCGACCTCCTCCAGGCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAATGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGTCGGTTCCAGCGAGGAGGTGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGAAGGAATCTGCACGGTGCGTGGTTCAGTGAGCACTTGATAGAGGAGCGGAAAGCACGCACTAAAAACATAAAACGAAGGTGCAGCAACGCAAGCGAGAAGCGAATCGTTTACCAAACACGCGCGTTTtcccgg] [-] EMBL BX604976 [ CCTCCAGTCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACAGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGGAGGGATCTGCACGGTGCGTGATTCAGTGAGCACTTGATAGAGAAGCGGGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6439#0 AAATTACTTTGTGTTTATTGGTAATTATACTGAAAAAAGATTCGTTTTATTTCGTGATTA 60 consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 ATAATTACTACATCTGTTCATTGTACTGTAGATTCCTGAACACTAGAACACACAGTCGTT 120 consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 GCCACCAGACGTCTGGTCTGGTGAAGTAATGTGCTGTTATCGTTAAATATCTTACCATTA 180 consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 ATGTATGTAATCTACCTGTAGAGGTAGACGTTTTCATAAAACGAACAAAAATACATTCAA 240 consensus_6439#1 ------------------------------------------------------CCTCCA 6 ** * consensus_6439#0 AGAAACGATAACTCCAGAAGATTTGCATCGCCACGTGACGTGAACCCTACAAACCGGTGG 300 consensus_6439#1 CCGTACGGTCCACCTGCAGCGTGTCCAGCACC--------TGCGTCCAGTTAATCGA-AA 57 *** * * * * * ** * ** ** ** ** ** consensus_6439#0 TCATTATACGAAAAAGATCAAACGAACGTTAACTGGACAAACAAGCAATTATTAAATGCT 360 consensus_6439#1 CCGCCTCAAAGTCGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACG 117 * * **** * * * ** * * * * * consensus_6439#0 TCACTGGAATATTAAAAAAATAATTCGAACAAAAATCTCAAAACGTAAGTAATCGATCCA 420 consensus_6439#1 TGGGCAAATTTTTGTTCACCT---TCGTGCGAATGGTGCGGGCCGCA------TACTCCA 168 * * * ** * * *** * ** * ** * **** consensus_6439#0 AGGAACCCGACCTGACAACTGTTGTCAGCTCTTTAACAGGGCATGTCTACTTGCGACGGT 480 consensus_6439#1 GCTTGTCGGAGGTGACCCACACCGGCACAATGTT----GTGCGCATCGACCTGACACAGC 224 * ** **** * ** ** * ** ** ** ** ** * consensus_6439#0 GCACTTTCCCACCGTAGCGCACCACGAACGCATTCACGTTGAATTTACGCTTGCATCCGT 540 consensus_6439#1 GGGATCCCCATCGGGAGCGCTTTCCGCACCTCGTCG-ACCCACTTCATCGGCACGCGCAG 283 * * ** * * ***** ** ** ** * ** * * * consensus_6439#0 CATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGCTCCTTC-CAGCCCTGATCGTGG 599 consensus_6439#1 CG-GGCTAAAGTCACACACTACGCCACCGATTTTGTGTTTCTTCACAAACGCCGGCACAT 342 * * * * ** * * * *** ***** * * * **** ** * * consensus_6439#0 ATGCCCGCGCATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATC-CAGAC 658 consensus_6439#1 TTTCGCCCGCA-CTACCGC--GCAGCAGATGGAACTGGATG--TTAAGCTTACGGCACTC 397 * * * **** * *** * *** * ** * * * * * * ** * ** * consensus_6439#0 TGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACT 718 consensus_6439#1 TTCGGCGACCTCCT---CCAGTCCCTTCAGCATGAACTTAAA-GTGCCGTATGGTGGCGT 453 * **** * ** * ** * *** * ** * * ** * consensus_6439#0 CCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCCTTCACCA 778 consensus_6439#1 CCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCA 513 **** * *** ** *** * ** ** * *** * * ** * *** consensus_6439#0 TCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCCTCCC 838 consensus_6439#1 GCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATC---- 569 ** * * * * * * * *** *** *** * ** * consensus_6439#0 GGCTGTAGCAGTACACCC-GCTTGTCCTTC-CGATGGTCGTCCAGCGTTTTGCGGGCCCA 896 consensus_6439#1 --CAGTA-CAGCACGCCCTGCTTGCCATCCTCGATGGTCTT--GGCATCGGACAGG---A 621 * *** *** ** *** ***** * * * ******** * ** * * ** * consensus_6439#0 ATCGTACGCACCCTGCATTGTTGTCGTAGTTTTTTTTTTTTGTTTTTAAAGTTATCCGA- 955 consensus_6439#1 TGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGT 681 ** **** *** *** * * * * * * * * **** consensus_6439#0 CAGCTCCCGGCG-CACGATCGCCTCCTCGCAGAACGAGGCCACGCTTTCGCTGTACCGCT 1014 consensus_6439#1 CCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTT 741 * *** * ** * *** ***** * * ** ** ** * * ** * * consensus_6439#0 TGCCGTGCTTCTTCACCGTCAGTACTGCCCGCTGGACCGCGATCTGGCCGAAGTGAAACC 1074 consensus_6439#1 T-CGGTGGGTCGTCATT-TGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGG- 798 * * *** ** *** * * *** * * ** * *** * * * consensus_6439#0 AGGGCGACAGGTTCGAGAGCGCATTTTCGGTCGGATCGTTCCGTTTGTCGTTGAATTTGC 1134 consensus_6439#1 ACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAG---AAGGAGGGATCTGC 855 * * *** * * * * * * * *** ** ** * * * ** *** consensus_6439#0 CCAAC-CGCTTCTCGACAAAGGTCTGCAGCGTCTTCACGCCACCGGTGTACCCCGGCGTG 1193 consensus_6439#1 ACGGTGCGTGATTCAGTGAGCACTTGA--------TAGAGAAGCGGGAAGCACGAACTAA 907 * ** ** * ** * * *** * * * consensus_6439#0 GCCCACTCGACAGCCTCCACCGTACGGTCCACCTGCAGCGTGTC--CAGCACCTGCGTCC 1251 consensus_6439#1 AAACATAAAACGAAGGT-GCAGGAACGCAAGCGAGCAGCGAATCGTTACCAAACACGCGC 966 ** ** * * * * * ****** ** * ** ** * consensus_6439#0 AGTTGATCGGATCCGCCTCAAAGTTGGCCGTGAACGGATGCTTCACCAACGGCGGGAACG 1311 consensus_6439#1 GTTTCAACGG-------------------------------------------------- 976 ** * *** consensus_6439#0 GTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTACGGGCCGCATACT 1371 consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 CCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCCGGACGCGTGGGCG 1431 consensus_6439#1 ------------------------------------------------------------ consensus_6439#0 G 1432 consensus_6439#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||