These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1336 fasta sequence [CCGGAACTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTGTGTGTGCCCGCTTGTGTGGTGGCGCCGCGTGACACATACGGTGTCTTTAATTTCCGCCACTTACACTTAAGCCACCTGGCAGAGGTGTAGTGCCTTAGGCAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGAAAAACCCTGCTGGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCCGACCGGGACGTGTATGGGCCGCTGCCGGACGCCTTCCTGGACCGGGTGCAACCGCAGGACTGGGCGCTCGATGTGAGCGAAATACTGATCATGGGTGGTGGTGAACTCGTGCGTACTGCTGATCACCTTCCACAAGCATCGGTTCATCGTGATGCGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCTCACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAGCAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGGGCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGTGACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGATCCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGGCCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTACCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACGTGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCTCCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCCGGGACGCGAAAGTTGATGCC] [+] EMBL BM588429 [CCGGAACTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTGTGTGTGCCCGCTTGTGTGGTGGCGCCGCGTGACACATACGGTGTCTTTAATTTCCGCCACTTACACTTAAGCCACCTGGCAGAGGTGTAGTGCCTTAGGCAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGAAAAACCCTGCTGGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCCGACCGGGACGTGTATGGGCCGCTGCCGGACGCCTTCCTGGACCGGGTGCAACCGCAGGACTGGGCGCTCGATGTGAGCGAAATACTGATCATGGGTGGTGGTGAACTCGTGCGTAC ] [+] EMBL BM606505 [ ccgGGGCGCTCGATGTGAGCGAAATACTGATCAT GGTGGTGGTGAACTCGTGCGTACTGCTGATCACCTTCCACAAGCATCGGTTCATCGTGATGCGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCTCACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAGCAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGGGCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGTGACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGATCCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGGCCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTACCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACGTGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCTCCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCCGG ] [+] EMBL BX628129 [ CGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCTCACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAGCAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGGGCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGTGACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGATCCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGGCCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTACCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACGTGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCTCCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCCGGGACGCGAAAGTTGATGCC] consensusID : consensus_6441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTTGTGTGTGCCCGCTTGAGTGGTGGCGCCGCGTGACACATACTGTGTGCTGTGTGTACACGGCCTCGATCCTGGTGCCTTTTATTTCCGCCACTTACACTAAAGCCACCTGGCAGTGGTGTAGTGCCTTAGGTAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCACCGCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCGAACGGGACGTGTATGG] [+] EMBL BM584270 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTTGTGTGTGCCCGCTTGAGTGGTGGCGCCGCGTGACACATACTGTGTGCTGTGTGTACACGGCCTCGATCCTGGTGCCTTTTATTTCCGCCACTTACACTAAAGCCACCTGGCAGTGGTGTAGTGCCTTAGGTAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCACCGCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCGAACGGGACGTGTATGG] consensusID : consensus_6441#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CCGAAAAAAAAAGGCTTAAACATATTTTAACCACACACCGAGTGCCGGTCATTGTGTACGTGTATGTGTATGTGCGATATTGTTTGTGTACATAGGTGTGCGTCATCCTAATCCCGTAGGAAAGCTTGTCTACGCCAAGCCTGCAAGATAGCCTTGGGCGAAGCAGAACTGTAACAGTTGAATAAATTAAATTCACAAGCAAAAACAGGAAAAAAGCCCGAAACTGCAAGCAAATAATTAATCATCAAAATGGAAATTAACGCAAGAGGAAGTCATAAGAATGGCTCCGGTTTGGATCTAGCCACGGTCGTGATGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGTGTCCCCGACCGGGGACGTGTACGGGCCG] [+] EMBL BM579074 [CCGAAAAAAAAAGGCTTAAACATATTTTAACCACACACCGAGTGCCGGTCATTGTGTACGTGTATGTGTATGTGCGATATTGTTTGTGTACATAGGTGTGCGTCATCCTAATCCCGTAGGAAAGCTTGTCTACGCCAAGCCTGCAAGATAGCCTTGGGCGAAGCAGAACTGTAACAGTTGAATAAATTAAATTCACAAGCAAAAACAGGAAAAAAGCCCGAAACTGCAAGCAAATAATTAATCATCAAAATGGAAATTAACGCAAGAGGAAGTCATAAGAATGGCTCCGGTTTGGATCTAGCCACGGTCGTGATGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGTGTCCCCGACCGGGGACGTGTACGGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6441#0 ---------------------CCGGAACTCTTCAGTGCGTCGGTTGTGCTTTTGT-GTGT 38 consensus_6441#1 CCGCCCACGCGTCCGCCCACGCGTCCGCTCTTCAGTGCGTCGGTTGTGCTTTTGT-GTGT 59 consensus_6441#2 ------------------------CCGAAAAAAAAAGGCTTAAACATATTTTAACCACAC 36 * * * * *** consensus_6441#0 CCCGGGGTCGGTTTTTTT-GTGTGTGCCCGCTTGTGTGGTGGCGCCGCGTG-ACACATAC 96 consensus_6441#1 CCCGGGGTCGGTTTTTTTTGTGTGTGCCCGCTTGAGTGGTGGCGCCGCGTG-ACACATAC 118 consensus_6441#2 ACCGAGTGCCGGTCATTGTGTACGTGTATGTGTATGTG-CGATATTGTTTGTGTACATAG 95 *** * * * * ** ** *** * * *** * * ** ***** consensus_6441#0 -------------------------------GGTGTCTTTAATTTCCGCCACTTACACTT 125 consensus_6441#1 T-GTGTGCTGTGTGTACACGGCCTCGATCCTGGTGCCTTTTATTTCCGCCACTTACACTA 177 consensus_6441#2 GTGTGCGTCATCCTAATCCCGTAGGAAAGCTTGTCTACGCCAAGCCTGCAAGATAGCCTT 155 ** * * ** * ** ** consensus_6441#0 AAGCCACCTGGCAGAGGTGTAGTGCCTTAGGCAGTGGATATCAGCTGTGTTGCCGCGATG 185 consensus_6441#1 AAGCCACCTGGCAGTGGTGTAGTGCCTTAGGTAGTGGATATCAGCTGTGTTGCCGCGATG 237 consensus_6441#2 GGGCGA---AGCAGAACTGTAACAGTTGAATAAATTAAATTCACAAGCAAAAACAGGAAA 212 ** * **** **** * * * * * *** * * ** consensus_6441#0 AAGGT--GATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACA 243 consensus_6441#1 AAGGT--GATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACA 295 consensus_6441#2 AAAGCCCGAAACTGCAAGCAAATAATTAATCATCAAAATGGAAATTAACGCAAGAGGAAG 272 ** * ** ** * ** ** **** ** * ** ** * * consensus_6441#0 CGTACAGTGTGCATCC---TTGGAGCTA-CCTCCCCTGCCA-GGAAGTGCCTGACTCATA 298 consensus_6441#1 CGTACAGTGTGCATCC---TTGGAGCTA-CCTCCCCTGCCA-GGAAGTGCCTGACTCATA 350 consensus_6441#2 TCATAAGAATGGCTCCGGTTTGGATCTAGCCACGGTCGTGATGGAAGTGCCTGACTCATA 332 ** ** *** ***** *** ** * * * ****************** consensus_6441#0 CGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTC 358 consensus_6441#1 CGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTC 410 consensus_6441#2 CGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTC 392 ************************************************************ consensus_6441#0 GCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGA 418 consensus_6441#1 GCCCTACCACCAGCAAAACCACCAGCCACCGCCCTCCGACACCGGCAGCCCGTCGAGCGA 470 consensus_6441#2 GCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGA 452 *************************** ** ***************************** consensus_6441#0 TGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCC 478 consensus_6441#1 TGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCC 530 consensus_6441#2 TGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCC 512 ************************************************************ consensus_6441#0 GAAGGAAATTGGAAAAACCCTGCTGGCGCTCCTG-TTCCTAGCGGGCAACTTTTTCCTCG 537 consensus_6441#1 GAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTG-TTCCTAGCGGGCAACTTTTTCCTCG 589 consensus_6441#2 GAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGGTTCCTAGCGGGCAACTTTTTCCTCG 572 ************ *********** ********* ************************* consensus_6441#0 CCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCCGACCGGG-ACGTGTATGGGCCG 596 consensus_6441#1 CCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCC-GAACGGG-ACGTGTATGG---- 643 consensus_6441#2 CCACCGTGTCGCTCTCCCTGGTGCACGATCGTGTCCCCGACCGGGGACGTGTACGGGCCG 632 ******************************* ***** ** **** ******* ** consensus_6441#0 CTGCCGGACGCCTTCCTGGACCGGGTGCAACCGCAGGACTGGGCGCTCGATGTGAGCGAA 656 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 ATACTGATCATGGGTGGTGGTGAACTCGTGCGTACTGCTGATCACCTTCCACAAGCATCG 716 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 GTTCATCGTGATGCGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCT 776 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 CACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAG 836 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 CAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGG 896 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 GCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGT 956 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 GACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGAT 1016 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 CCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGG 1076 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 CCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTA 1136 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 CCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACG 1196 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 TGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCT 1256 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 CCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCC 1316 consensus_6441#1 ------------------------------------------------------------ consensus_6441#2 ------------------------------------------------------------ consensus_6441#0 GGGACGCGAAAGTTGATGCC 1336 consensus_6441#1 -------------------- consensus_6441#2 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||