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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1532 fasta sequence
[CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAATGGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAGCAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTCGAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANACCTGCAGGAGGTCACGCAGGAGGTGCACTA-CNAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGAATAT--------ACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAAAAAAAAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCCGCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAATGGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTCGATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATATATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTAAAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAAAACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGCAGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAATTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTTCTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATAATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGCTCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAGGATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT]
[+] EMBL BX627353 [CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAATGGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAGCAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTCGAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANACCTGCAGGAGGTCACGCAGGAGGTGCACTACCNAAAACTATCGCTCGGAGCGGTT ]
[-] EMBL AGA283485 [ CGCAAGGTGCGCGGTCGGCTTTACCCGTGGGGTGTCGTCGAGGTGAAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTA CGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGAATATATACACCAACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAAAAAAA ]
[+] EMBL BX622772 [ GGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGGATAT ACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAACAAAACAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCCGCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAATGGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTCGATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAG ]
[+] EMBL BM582840 [ ccgCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATATATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTAAAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAAAACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGCAGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAATTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTTCTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATAATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGCTCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAGGATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT]
consensusID : consensus_6443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[GAAATTCCAGGTTTACCGGACATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACAATTCGTGATAAAGGAGGAGAACGGTGGGGCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTGTGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGATGGTGATGATGAATCAAA]
[+] EMBL AL695683 [GAAATTCCAGGTTTACCGGACATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACAATTCGTGATAAAGGAGGAGAACGGTGGGGCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTGTGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGATGGTGATGATGAATCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6443#0 CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAAT 60
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 GGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAG 120
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 CAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTC 180
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 GAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAA 240
consensus_6443#1 ------------------------------------------GAAAT--TCCAGGTTTA- 15
* * ** **** *
consensus_6443#0 AACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANAC 300
consensus_6443#1 ---CCGGAC-ATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGAC 71
****** ************************* *********** ********* **
consensus_6443#0 CTGCAGGAGGTCACGCAGGAGGTGCACTACNAAAACTATCGCTCGGAGCGGTTGGCGAAA 360
consensus_6443#1 CTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAA 131
****************************** *****************************
consensus_6443#0 TCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTG 420
consensus_6443#1 TCCGTGCGCAAAAACAC--AATTCGTGATAAAGGAGGAGAACGGTGGGGC-GGCATTGTG 188
***************** * * ************************ ** *********
consensus_6443#0 CCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGC 480
consensus_6443#1 CCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATC-GC 247
********************************************************* **
consensus_6443#0 CGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCA-GGCACAGAAG-TAA-TTG 537
consensus_6443#1 CGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTG 307
***************************************** ********** *** ***
consensus_6443#0 TGGTGTAGTGAAAAGAGGAATATACACACACACACACA-CAAAAGAGGGAAGAAGAGGAT 596
consensus_6443#1 TGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGAT 367
****************** ******************* ***** ** * * *****
consensus_6443#0 GGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAA 656
consensus_6443#1 GGTGATGATGAATCAAA------------------------------------------- 384
****************
consensus_6443#0 AAAAAAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCC 716
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 GCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAAT 776
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 GGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTC 836
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 GATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATT 896
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 TTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGT 956
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 ACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATA 1016
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 TATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTA 1076
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 AAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAA 1136
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 AACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGC 1196
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 AGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAA 1256
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 TTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTT 1316
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 CTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATA 1376
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 ATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGC 1436
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 TCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAG 1496
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 GATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT 1532
consensus_6443#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||