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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence
[ATCAGTAGTAGTGTGATTTATTAGCGCAAAAAAGGGGGATGTAAGACCGTGCGTACCATGCGGCAGGGGGTTTTTGTGGTATTTTGTGTTAATTTTTGTCCCCCTTTCCTTAACACCCCCCGTTGGTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTGTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTCTCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGAGGAANAGATCAAGCTTAGCGTT]
[+] EMBL BX623032 [ATCAGTAGTAGTGTGATTTATTAGCGCAAAAAAGGGGGATGTAAGACCGTGCGTACCATGCGGCAGGGGGTTTTTGTGGTATTTTGTGTTAATTTTTGTCCCCCTTTCCTTAACACCCCCCGTTGGTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTGTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTCTCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGAGGAANAGATCAAGCTTAGCGTT]
[-] EMBL AGA280607 [ GTAGATGATTTCTCTATTAATCCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTGTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGGTGCTTCATGCGGGTGTGTGCGTGTGTATAATGGGTCCCTCGTTCGT ]
consensusID : consensus_6453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence
[GTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTTCGGATCGCAGTTCAATAGTAGCTTGAAGTTCACAGTACTACTCCGTGTATGAGATGTCCCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACCCTGTGCCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATTTTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTATCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGANGAAGAGAACAAGCTTTGCGTTAACGAGAGAACGATCGGTTAAAGAGAGCGATACAAGGAGCATAG]
[+] EMBL BX621496 [GTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTTCGGATCGCAGTTCAATAGTAGCTTGAAGTTCACAGTACTACTCCGTGTATGAGATGTCCCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACCCTGTGCCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATTTTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTATCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGANGAAGAGAACAAGCTTTGCGTTAACGAGAGAACGATCGGTTAAAGAGAGCGATACAAGGAGCATAG]
consensusID : consensus_6453#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[TTAGCTCGAGCAGAATCGCCNGAGGTGTACTTTGGGAGGATTGTTTGTTTGAATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCCAGTGTTAGCTTAATTGAACCAAATCAGTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACCTGAAGTTCATCCCGGAACCGGACCACACTGTTAAAATTGCCCATTAATACCGATTGCGTCTAATTGTTACTCCTCNGGGGCAAGAGTTGCTTTCATGCGGGGTGTAGTGCGGTGTGTATATTGGGGTANCCCTTCGGTTTCCGGTAAATATTCCGTTGAACCAGGGTTTCTTCGAAAAGGCGGTTTCACGGAGCAGCTTTCCACAAAGGTCTTCTTATTATGGGTCCTTAACACAACTTTACTTAAACAAACGGAAGGCCCTGTCGATAATCCAATTTCCCTTGGTACCCTTGGANAAGGCTTATTAAACATTCCGGTTAAAACCGACGGGCGAAGCGCAAAGGCAAGAATCAAAAGCCTTTAGGCAGTTTAAACGGGAGAAGGAAACGTTAATGCCGGGGTTTAAAACACGACAGCAAGCC]
[+] EMBL AL696771 [TTAGCTCGAGCAGAATCGCCNGAGGTGTACTTTGGGAGGATTGTTTGTTTGAATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCCAGTGTTAGCTTAATTGAACCAAATCAGTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACCTGAAGTTCATCCCGGAACCGGACCACACTGTTAAAATTGCCCATTAATACCGATTGCGTCTAATTGTTACTCCTCNGGGGCAAGAGTTGCTTTCATGCGGGGTGTAGTGCGGTGTGTATATTGGGGTANCCCTTCGGTTTCCGGTAAATATTCCGTTGAACCAGGGTTTCTTCGAAAAGGCGGTTTCACGGAGCAGCTTTCCACAAAGGTCTTCTTATTATGGGTCCTTAACACAACTTTACTTAAACAAACGGAAGGCCCTGTCGATAATCCAATTTCCCTTGGTACCCTTGGANAAGGCTTATTAAACATTCCGGTTAAAACCGACGGGCGAAGCGCAAAGGCAAGAATCAAAAGCCTTTAGGCAGTTTAAACGGGAGAAGGAAACGTTAATGCCGGGGTTTAAAACACGACAGCAAGCC]
consensusID : consensus_6453#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[CCCGAGGTTTAGTCACTACTTTACATTACAGTTCGCGAATGTATTTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGCGATAGNAAGTGTTCGATATAGTGGATCCAAATCGGAGCNCTGTGTTGCTTGATGCAAATCGATATGACATTATCCGCTTGTTACTCTGGTGTCTNTGGACGCTCTGCNGTGTTTAGCTGTNNCGTTGTGTAGCTTGACCTTCGTCCGACAGGCGTGCAGGTGTGAGCTTAATTGAACAACGATCAGCTTGTGTATGAGTTCTACTGTATGTATGCTGCTTTTACTGAGTTTGTATTGCGNCTTTTTCTTAAATGCAGCATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGCGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCG]
[+] EMBL AL692449 [CCCGAGGTTTAGTCACTACTTTACATTACAGTTCGCGAATGTATTTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGCGATAGNAAGTGTTCGATATAGTGGATCCAAATCGGAGCNCTGTGTTGCTTGATGCAAATCGATATGACATTATCCGCTTGTTACTCTGGTGTCTNTGGACGCTCTGCNGTGTTTAGCTGTNNCGTTGTGTAGCTTGACCTTCGTCCGACAGGCGTGCAGGTGTGAGCTTAATTGAACAACGATCAGCTTGTGTATGAGTTCTACTGTATGTATGCTGCTTTTACTGAGTTTGTATTGCGNCTTTTTCTTAAATGCAGCATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGCGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6453#0 ATCAGTAGTAGTGTGATTTATTAGCGCAAAAAAGGGGGATGTAAGACCGTGCGTACCATG 60
consensus_6453#1 ------------------------------------------------------------
consensus_6453#3 ------------------------------------------------------------
consensus_6453#2 ------------------------------------------------------------
consensus_6453#0 CGGCAGGGGGTTTTTGTGGTATTTTGTGTTAATTTTTGTCCCCCTTTCCTTAACACCCCC 120
consensus_6453#1 ------------------------------------------------------------
consensus_6453#3 ------------------------------------------------------------
consensus_6453#2 ------------------------------------------------------------
consensus_6453#0 CGTTGGTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAG 180
consensus_6453#1 -----GTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAG 55
consensus_6453#3 ------------------------------------------------------------
consensus_6453#2 ------------------------------------------------------------
consensus_6453#0 TTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGA 240
consensus_6453#1 TTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGA 115
consensus_6453#3 ----------------------CCCGAGGTTTAGTCACTACTTTACATTACAGTTCGCGA 38
consensus_6453#2 ------------------------------------------------------------
consensus_6453#0 ATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATT------------- 287
consensus_6453#1 ATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTTCGGATCGCAGTTCAATAGTAGCTT 175
consensus_6453#3 ATGTATTTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATT------------- 85
consensus_6453#2 ------------------------------TTAGCTCGAGCAGAATC------------- 17
* * ** * *
consensus_6453#0 ---GTCC---------------GTATGAATTGTGTCCCTTTGGGAG-GATTGTTT-TGTT 327
consensus_6453#1 GAAGTTCACAGTACTACTCCGTGTATGAGATGTCCCCCTTTGGGAG-GATTGTTT-TGTT 233
consensus_6453#3 ---GTCC---------------GTATGAATTGTGTCCCTTTGGGAGCGATAGNAAGTGTT 127
consensus_6453#2 ----------------------GCCNGAGGTGTA---CTTTGGGAG-GATTGTTTGT-TT 50
* ** *** ********* *** * * **
consensus_6453#0 TGATTTTAGTTGAAG-AAATCGGCGCGCT-TGTTTCTTT-TGCAAATCGTTT--GCTTAC 382
consensus_6453#1 TGATTTTAGTTGAAG-AAATCGGCGCGCT-TGTTTCTTT-TGCAAATCGTTT--GCTTAC 288
consensus_6453#3 CGATAT-AGTGGATCCAAATCGGAGCNCTGTGTTGCTTGATGCAAATCGATATGACATTA 186
consensus_6453#2 GAATTTTAGTTGAAG-AAATCGGCGCGCT-TGTTTCTTT-TGCAAATCGTTT--GCTTAC 105
** * *** ** ******* ** ** **** *** ********* * * *
consensus_6453#0 TCTGCTT-TTACTCTG-TGTC-GTGGACGCTCTG-TGCTGTTTTGCTGTACGTTTTTG-- 436
consensus_6453#1 TCTGCTT-TTACCCTG-TGCC-GTGGACGCTCTG-TGCTGTTTTGCTGTACGTTTTTG-- 342
consensus_6453#3 TCCGCTTGTTACTCTGGTGTCTNTGGACGCTCTG-CNGTGTTTAGCTGTNNCGTTGTGTA 245
consensus_6453#2 TCTGCTT-TTACTCTG-TGTC-GTGGACGCTCTGGTGCTGTTTTGCTGTACGTTTTTG-- 160
** **** **** *** ** * *********** ***** ***** ** **
consensus_6453#0 -CTTGACCTTCGTCC-ACAGGCGTGCAG-TGTTAGCTTAATTGAACAAC-ATCAGCTTGT 492
consensus_6453#1 -CTTGACCTTCGTCC-ACAGGCGTGCAG-TGTTAGCTTAATTGAACAAC-ATCAGCTTGT 398
consensus_6453#3 GCTTGACCTTCGTCCGACAGGCGTGCAGGTGTGAGCTTAATTGAACAACGATCAGCTTGT 305
consensus_6453#2 -CTTGACCTTCGTCC-ACAGGCGTGCCAGTGTTAGCTTAATTGAACCAA-ATCAG-TTGT 216
************** ********** *** ************* * ***** ****
consensus_6453#0 GTA--GGTTCTACTGTA-GTATGCTGCTTTTACTGAGTTT-TGTTTTGT----------T 538
consensus_6453#1 GTA--GGTTCTACTGTA-GTATGCTGCTTTTACTGAGTTT-TGTTTT------------T 442
consensus_6453#3 GTATGAGTTCTACTGTATGTATGCTGCTTTTACTGAGTTTGTATTGCGNC---------T 356
consensus_6453#2 GTA--GGTTCTACTGTA-GTATGCTGCTTTTACCTGAAGTTCATCCCGGAACCGGACCAC 273
*** *********** *************** * *
consensus_6453#0 TTTTTTTAAATGCA-CATTAATAC-GATTGC-TCTAATTGTTACTCCTCGGGC-----AG 590
consensus_6453#1 TTTTTTTAAATGCA-CATTAATAC-GATTGC-TCTAATTGTTACTCCTCGGGC-----AG 494
consensus_6453#3 TTTTCTTAAATGCAGCATTAATAC-GATTGC-TCTAATTGTTACTCCTCGGGC-----AG 409
consensus_6453#2 ACTGTTAAAATTGCCCATTAATACCGATTGCGTCTAATTGTTACTCCTCNGGGGCAAGAG 333
* * **** ********* ****** ***************** ** **
consensus_6453#0 CTGCTT-CATGCG-GGTGT-GTGCG-TGTGTATATTGGGTCCCTCGTTCGTAATATCGCT 646
consensus_6453#1 CTGCTT-CATGCG-GGTGT-GTGCG-TGTGTATTTTGGGTCCCTCGTTCGTAATATCGCT 550
consensus_6453#3 CTGCTT-CATGCGCGGTGT-GTGCG-TGTGTATATTGGGTCCCTCGTTCGTAATATCGCT 466
consensus_6453#2 TTGCTTTCATGCGGGGTGTAGTGCGGTGTGTATATTGGGGTANCCCTTCG-GTTTCCGGT 392
***** ****** ***** ***** ******* ***** * **** * ** *
consensus_6453#0 GACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTCTCTATTTGTCTAAACACTTACTAAC 706
consensus_6453#1 GACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTATCTATTTGTCTAAACACTTACTAAC 610
consensus_6453#3 GACAGGTTTTAAAGCG-------------------------------------------- 482
consensus_6453#2 AA-ATATTCCGTTGAACCAGGGTTTCTTCGAAAAGGCGGTTTCACGGAGCAGCTTTCCAC 451
* * ** *
consensus_6453#0 ACGAGCCTGTCGTATCATT--CCTGTCCTGAAGCTTTACATCGTAACGCGGGAGGAANAG 764
consensus_6453#1 ACGAGCCTGTCGTATCATT--CCTGTCCTGAAGCTTTACATCGTAACGCGGGANGAAGAG 668
consensus_6453#3 ------------------------------------------------------------
consensus_6453#2 AAAGGTCT-TCTTATTATGGGTCCTTAACACAACTTTACTTAAACAAACGGAAGGCCCTG 510
consensus_6453#0 ATCAAGCTTAGCGTT--------------------------------------------- 779
consensus_6453#1 AACAAGCTTTGCGTTAACGAGAGAACGATCGGTTAAAGAGAGCGATACAAGGAGCATAG- 727
consensus_6453#3 ------------------------------------------------------------
consensus_6453#2 -TCGATAATCCAATTTCCCTTGGTACCCTTGGANAAGGCTTATTAAACATTCCGGTTAAA 569
consensus_6453#0 ------------------------------------------------------------
consensus_6453#1 ------------------------------------------------------------
consensus_6453#3 ------------------------------------------------------------
consensus_6453#2 ACCGACGGGCGAAGCGCAAAGGCAAGAATCAAAAGCCTTTAGGCAGTTTAAACGGGAGAA 629
consensus_6453#0 ----------------------------------------
consensus_6453#1 ----------------------------------------
consensus_6453#3 ----------------------------------------
consensus_6453#2 GGAAACGTTAATGCCGGGGTTTAAAACACGACAGCAAGCC 669
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||