These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1207 fasta sequence [GGCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACAACAAAGTAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGACCACCCGT-GACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGGGGCATCGCGAAGACGCTCTACCTCGGCAACAGTTCGCGCATGCCGACGAAAAGCTACCTGACGATCCACGAGCGGGCCCGCGGTGCCCGGCGGGCCAAGTTCAACAGCGTGCCGATCTACCGGACGCTCAAGGGGGCGCTCGCGGCGGGCCGCGCCAAGCCGGACGGCGAGCTGGGCGGCGAGGAGCGGCGGCTGCTGCAGAAGTACGTGCTGGAGGCGAAGCTGAGCGGGATCGAGGTGGACGGGTCGTCCAAGCTCGAGCTGAACGAGATACTGGAGCGGCTGGCGCAGGAGCGCTCGCGGTTCGCCGGCAAGCGGGACGTGGCGGTGAAGAAGTACCAGCAGGTGATCGAGGACCCGGCGCTGATGAAGGAGTTCCCGCCGAACCTGCTGCAGTCGCTCGCGACCGACCCGAGCCAGGCGATGAAGGGCCCGTGGCGGATCACGCTGCAGCCGGCGGTCGCGGAACGCTTCCTGGAGTACTGCGGCGACCGGACGCACCGCTGGAACCTGTGGCAGGCGGACACGCGCAAGTGCTCGATCCACACGGACAAGTCGCTGGAGAACAGCTCGCACCTCGAGTC] [+] EMBL BM615820 [GGCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACAACAAAGTAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCGAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAAAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGC ] [+] EMBL BM600544 [ cCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACAACAAAGTAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGACCACCCGT GACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCG ] [+] EMBL BM643351 [ ccgGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCATACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGTCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAAGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGACCACCCGT GACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGGGGCATCGCG ] [+] EMBL BM598941 [ ccgcggACGCGTGGGCGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGGGGCATCGCGAAGACGCTCTACCTCGGCAACAGTTCGCGCATGCCGACGAAAAGCTACCTGACGATCCACGAGCGGGCCCGCGGTGCCCGGCGGGCCAAGTTCAACAGCGTGCCGATCTACCGGACGCTCAAGGGGGCGCTCGCGGCGGGCCGCGCCAAGCCGGACGGCGAGCTGGGCGGCGAGGAGCGGCGGCTGCTGCAGAAGTACGTGCTGGAGGCGAAGCTGAGCGGGATCGAGGTGGACGGGTCGTCCAAGCTCGAGCTGAACGAGATACTGGAGCGGCTGGCGCAGGAGCGCTCGCGGTTCGCCGGCAAGCGGGACGTGGCGGTGAAGAAGTACCAGCAGGTGATCGAGGACCCGGCGCTGATGAAGGAGTTCCCGCCGAACCTGCTGCAGTCGCTCGCGACCGACCCGAGCCAGGCGATGAAGGGCCCGTGGCGGATCACGCTGCAGCCGGCGGTCGCGGAACGCTTCCTGGAGTACTGCGGCGACCGGACGCACCGCTGGAACCTGTGGCAGGCGGACACGCGCAAGTGCTCGATCCACACGGACAAGTCGCTGGAGAACAGCTCGCACCTCGAGTC] consensusID : consensus_6455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCGCCCACGTGTCCGAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGCCCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGTGGCATCGCGAAGACGCTCTA] [+] EMBL BM651596 [CCGCCCACGTGTCCGAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGCCCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGTGGCATCGCGAAGACGCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6455#0 GGCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACA-ACAAAGTAAG 59 consensus_6455#1 ------------------------------------------CCGCCCACGTGTCCGAAG 18 * ** *** consensus_6455#0 AAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAA-GG 118 consensus_6455#1 AAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAAGG 78 ********************************************************* ** consensus_6455#0 AAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCA 178 consensus_6455#1 AAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCA 138 ************************************************************ consensus_6455#0 CATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGA 238 consensus_6455#1 CATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGA 198 ************************************************************ consensus_6455#0 CATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGG 298 consensus_6455#1 CATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGG 258 ************************************************************ consensus_6455#0 CAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACAT 358 consensus_6455#1 CAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACAT 318 ****** ***************************************************** consensus_6455#0 AGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGAC 418 consensus_6455#1 AGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGAC 378 ************************************************************ consensus_6455#0 CGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCA 478 consensus_6455#1 CGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCA 438 ************************************************************ consensus_6455#0 GGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGC 538 consensus_6455#1 GGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGC 498 ************************************************************ consensus_6455#0 CGGCACCGGACCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGAC 598 consensus_6455#1 CGGCACCGGCCCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGAC 558 ********* ************************************************** consensus_6455#0 GGGCGCCCCGCTCGAGACGACCTGGGGCATCGCGAAGACGCTCTACCTCGGCAACAGTTC 658 consensus_6455#1 GGGCGCCCCGCTCGAGACGACCTGTGGCATCGCGAAGACGCTCTA--------------- 603 ************************ ******************** consensus_6455#0 GCGCATGCCGACGAAAAGCTACCTGACGATCCACGAGCGGGCCCGCGGTGCCCGGCGGGC 718 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 CAAGTTCAACAGCGTGCCGATCTACCGGACGCTCAAGGGGGCGCTCGCGGCGGGCCGCGC 778 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 CAAGCCGGACGGCGAGCTGGGCGGCGAGGAGCGGCGGCTGCTGCAGAAGTACGTGCTGGA 838 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 GGCGAAGCTGAGCGGGATCGAGGTGGACGGGTCGTCCAAGCTCGAGCTGAACGAGATACT 898 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 GGAGCGGCTGGCGCAGGAGCGCTCGCGGTTCGCCGGCAAGCGGGACGTGGCGGTGAAGAA 958 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 GTACCAGCAGGTGATCGAGGACCCGGCGCTGATGAAGGAGTTCCCGCCGAACCTGCTGCA 1018 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 GTCGCTCGCGACCGACCCGAGCCAGGCGATGAAGGGCCCGTGGCGGATCACGCTGCAGCC 1078 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 GGCGGTCGCGGAACGCTTCCTGGAGTACTGCGGCGACCGGACGCACCGCTGGAACCTGTG 1138 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 GCAGGCGGACACGCGCAAGTGCTCGATCCACACGGACAAGTCGCTGGAGAACAGCTCGCA 1198 consensus_6455#1 ------------------------------------------------------------ consensus_6455#0 CCTCGAGTC 1207 consensus_6455#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||