These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1194 fasta sequence [CCGGGTGTGTGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCCTGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTGTAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGTGTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAGAAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTCCACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAGAAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCAATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAGAAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAAAGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAGAAAAACACAACTAGGCTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATTGTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGTGGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCATTCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTCCAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCATTCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTATGTGACTGAGTGTCTGTGTAAGTGTATGTTTGTATGTATGTTGGTTGTTATTTCCGCAG] [+] EMBL BM593655 [CCGGGTGTGTGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCCTGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTGTAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGTGTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAGAAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTCCACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAGAAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCAATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAGAAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAAAGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAG ] [+] EMBL BM649954 [ ccgGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCCTGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTGTAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGTGTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAGAAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTCCACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAGAAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCAATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACG ] [+] EMBL BX622090 [ AACCCGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAGAAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAAAGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAGAAAAACACAACTAGGCTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATTGTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGTGGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCATTCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTCCAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCATTCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTAT ] [+] EMBL BX624932 [ GCTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATTGTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGTGGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCATTCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTCCAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCATTCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTATGTGACTGAGTGTCTGTGTAAGTGTATGTTTGTATGTATGTTGGTTGTTATTTCCGCAG] consensusID : consensus_6461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [GGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCCCCCCCCTCCCCACCCATAATCGTTAGAGCGGGGGGGGATAGGGGATACGTACCCCCCCCANA] [+] EMBL BX619844 [GGGTGAGAGTAATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACTCTGTACCCCCCCCCCCCCTCCCCACCCATAATCGTTAGAGCGGGGGGGGATAGGGGATACGTACCCCCCCCANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6461#0 CCGGGTGTGTGCGAGTAAGAGCGTTTTTTTGTAATTAATTTCCTCATGTATTTTGTAGCC 60 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 TGATTGTAATCTGAGTGCCATCTGCGTTTTGCAAAACAAAACAAAAAAGCGAAACAAGTG 120 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 TAATAAGCATAAAACAGACAGACCTGTGCTGTGTGCGCGTGTGAGTGTGTGTGTGAGTGT 180 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 GTGTATGGAAAGGAGGAACCCGTTCTAATTGTAAAAAGGACGACTGTGTGTGTGTGAGAG 240 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 AAGGGATTATGGTAACTCACCCATGTGGACTTGTTCCACATTCTTGTTTGCTGTATTTTC 300 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 CACTTTAATAATTAAATGTGGCTTGCCCATGGCACACTGTGTGCTGAGCAGGGTGAAGAG 360 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 AAACGTTCTCAGCTACGTGCGCCTGCCCCACGATTTCAATCTAGGCAGCACAGAACGGCA 420 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 ATGGTTGAATAAACAAGAGAGGGAAATGTGTAATGGAAAGTGATTTCATAGAAGAAAACC 480 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 CGTTAAAGGATGCATGGGGAAAAGGTAGAACGTAAAGTTGTTTGTGTGAATACGTAAAAG 540 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 AAAGAAGTGAAAAAGAAAGAATCGCTAATTGAAAAGCAAACAATAGGAAGGAAAAACAAA 600 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 AGAGAAAAAGAGAGAAGAGAAAGGAACACAGAGAGAGAAAGAGAGAAAAACACAACTAGG 660 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 CTGTGAAAATAGAAGTTAATCAATTAAGAATGTTTGTCATTTGTCTTTCTGCCTCCGATT 720 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 GTTTTGGGACGAGAGGCGGGCTGGTGTCCTGACTCCCTCTCCCCACTTCTTCGTTTCGGT 780 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 GGCCATTTAGGGTATGTGTGTGTGTGTGTATGTACGGGCGAATGAATGTGAAAAAAGCAT 840 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 TCTCAGTGTTCGGTGTGCTTTATAATTCGGTCGGAGGGACATTTAACGTAAAGCTGTGTC 900 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 CAAAGTCCCCTCTAACCCTTCCCTAAAGAGGAGGTTAGGAAGTCAGGGAAGTGACATCAT 960 consensus_6461#1 ------------------------------------------------------------ consensus_6461#0 TCACTTTACCTGTGTAAGTTGATGATATTGTAGTTGTTCTTGTTGTTTGGGGTGAGAGTA 1020 consensus_6461#1 -------------------------------------------------GGGTGAGAGTA 11 *********** consensus_6461#0 ATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACT 1080 consensus_6461#1 ATGGGTGAAAAACGGCTATAGAAGCTGATTACCGCCATCACCGATTACTCCTCTTGTACT 71 ************************************************************ consensus_6461#0 CTGTACCCCCCTCCCCCCTCCCCACCCATAATCGGTATCTCTGTACGTGAATGTATGTGA 1140 consensus_6461#1 CTGTACCCCCCCCCCCCCTCCCCACCCATAATCGTTAGAGCGGGG-GGGGATAGGGGATA 130 *********** ********************** ** * * * * ** * * consensus_6461#0 CTGAGTGTCTGTGTAAGTGTATGTTTGTATGTATGTTGGTTGTTATTTCCGCAG 1194 consensus_6461#1 CGTACCCCCCCCANA--------------------------------------- 145 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||