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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1328 fasta sequence
[ACTGGCTCAGTTTTTCCATGTTGCGGAACAGGCGCTCGGAAACCAGCACAGCGGAAAATTGGACGATGCAATTCTGTGTGATCACTACCACCAACCAACAATCATCGCCACACGCTTCTTATAATATCGTAATGCGCAACAGCCTTCGACGGGACAACTGAAAGTATAACGAAATGATGTTAGTAGCCGCCTAACCATCCTCACCCTTACACACGTACCATTATATCCCAGGAAAGTGATATAGATGTAGTATCCGAGCGCCAACAGCCAAATGGTGTTGCCGATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTA-CCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAGTGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGAGGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCA-CGAAAATTGCTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGTAATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATCTTTTCGTCACTCATCGCTCCGTAGACGGAAAATTATATTTTGGTAAACAGTAAATAACTGCACGTCGATGACGGATCGTGACAGGGCTGAACTGGGGTTGTGACATTTCACGCAGGGTTGGATTGATATGCAGCTGCGAACGGTAGCATACACTCATTGTTCTCATCCAATACAAATAATTTGGAAACAATCAAA]
[+] EMBL CNS096EX [ACTGGCTCAGTTTTTCCATGTTGCGGAACAGGCGCTCGGAAACCAGCACAGCGGAAAATTGGACGATGCAATTCTGTGTGATCACTACCACCAACCAACAATCATCGCCACACGCTTCTTATAATATCGTAATGCGCAACAGCCTTCGACGGGACAACTGAAAGTATAACGAAATGATGTTAGTAGCCGCCTAACCATCCTCACCCTTACACACGTACCATTATATCCCAGGAAAGTGATATAGATGTAGTATCCGAGCGCCAACAGCCAAATGGTGTTGCCGATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTA CCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAGTGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGAGGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCA CGAAAATTGCTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGTAATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTTGCTCCGGG ]
[-] EMBL CNS096EY [ CAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAGTGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGAGGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCAGCG AAATTGCTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTG TTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATCTTTTCGTCACTCATCGCTCCGTAGACGGAAAATTATATTTTGGTAAACAGTAAATAACTGCACGTCGATGACGGATCGTGACAGGGCTGAACTGGGGTTGTGACATTTCACGCAGGGTTGGATTGATATGCAGCTGCGAACGGTAGCATACACTCATTGTTCTCATCCAATACAAATAATTTGGAAACAATCAAA]
consensusID : consensus_6498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 724 fasta sequence
[ATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTTGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATNTTATCGTCACTCATC]
[-] EMBL BX627388 [ATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTTGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCG ]
[-] EMBL BX626253 [ TTGATATGANCCAGTCCCTGCTAATTAGCGGATGGTAGAAGANCAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATNTTATCGTCACTCATC]
[-] EMBL BM644657 [ aGGTGCGATGAATAGGTACACCATTTGCCACATTGCATACTCAAAGTCCATTTGGTAGAATTTGATGAAACGCCGCAGGTATTTGTACCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGTCCGGTGCGGGCAGCGGCGATGCCGTTGTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATGCCTGCGCTATGTGTGTCGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6498#0 ACTGGCTCAGTTTTTCCATGTTGCGGAACAGGCGCTCGGAAACCAGCACAGCGGAAAATT 60
consensus_6498#1 ------------------------------------------------------------
consensus_6498#0 GGACGATGCAATTCTGTGTGATCACTACCACCAACCAACAATCATCGCCACACGCTTCTT 120
consensus_6498#1 ------------------------------------------------------------
consensus_6498#0 ATAATATCGTAATGCGCAACAGCCTTCGACGGGACAACTGAAAGTATAACGAAATGATGT 180
consensus_6498#1 ------------------------------------------------------------
consensus_6498#0 TAGTAGCCGCCTAACCATCCTCACCCTTACACACGTACCATTATATCCCAGGAAAGTGAT 240
consensus_6498#1 ------------------------------------------------------------
consensus_6498#0 ATAGATGTAGTATCCGAGCGCCAACAGCCAAATGGTGTTGCCGATGAACGTTGATATGAA 300
consensus_6498#1 -------------------------------------------ATGAACGTTGATATGAA 17
*****************
consensus_6498#0 CCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAG 360
consensus_6498#1 CCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAG 77
************************************************************
consensus_6498#0 GGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTA-CCCCACTCCATGTCGAAGTC 419
consensus_6498#1 GGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTC 137
*************************************** ********************
consensus_6498#0 GCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCAT 479
consensus_6498#1 GCTGTTTTGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCAT 197
******* ****************************************************
consensus_6498#0 GCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAA 539
consensus_6498#1 GCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAA 257
************************************************************
consensus_6498#0 CCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAG 599
consensus_6498#1 CCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGAC--------------------- 296
***************************************
consensus_6498#0 TGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCC 659
consensus_6498#1 -----------------------------------------------ACAAAGGCAACCC 309
*************
consensus_6498#0 ACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGA 719
consensus_6498#1 ACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTT-------- 361
****************************************************
consensus_6498#0 GGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCACGAAAATTG 779
consensus_6498#1 ------------------------------------------------------------
consensus_6498#0 CTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACAC 839
consensus_6498#1 -----GTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACAC 416
*******************************************************
consensus_6498#0 CATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGTAA 899
consensus_6498#1 CATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTA 476
********************************************************* *
consensus_6498#0 TTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGG 959
consensus_6498#1 TTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGG 536
************************************************************
consensus_6498#0 CGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTTGCTCCGGGATGGCGTAGGTG 1019
consensus_6498#1 CGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTT-GCTCCGGGATGGCGTAGGTG 595
*************************************** ********************
consensus_6498#0 ACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTC 1079
consensus_6498#1 ACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTC 655
************************************************************
consensus_6498#0 GTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATCTTTTCG 1139
consensus_6498#1 GTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATNTTATCG 715
***************************************************** ** ***
consensus_6498#0 TCACTCATCGCTCCGTAGACGGAAAATTATATTTTGGTAAACAGTAAATAACTGCACGTC 1199
consensus_6498#1 TCACTCATC--------------------------------------------------- 724
*********
consensus_6498#0 GATGACGGATCGTGACAGGGCTGAACTGGGGTTGTGACATTTCACGCAGGGTTGGATTGA 1259
consensus_6498#1 ------------------------------------------------------------
consensus_6498#0 TATGCAGCTGCGAACGGTAGCATACACTCATTGTTCTCATCCAATACAAATAATTTGGAA 1319
consensus_6498#1 ------------------------------------------------------------
consensus_6498#0 ACAATCAAA 1328
consensus_6498#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||