These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1328 fasta sequence [ACTGGCTCAGTTTTTCCATGTTGCGGAACAGGCGCTCGGAAACCAGCACAGCGGAAAATTGGACGATGCAATTCTGTGTGATCACTACCACCAACCAACAATCATCGCCACACGCTTCTTATAATATCGTAATGCGCAACAGCCTTCGACGGGACAACTGAAAGTATAACGAAATGATGTTAGTAGCCGCCTAACCATCCTCACCCTTACACACGTACCATTATATCCCAGGAAAGTGATATAGATGTAGTATCCGAGCGCCAACAGCCAAATGGTGTTGCCGATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTA-CCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAGTGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGAGGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCA-CGAAAATTGCTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGTAATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATCTTTTCGTCACTCATCGCTCCGTAGACGGAAAATTATATTTTGGTAAACAGTAAATAACTGCACGTCGATGACGGATCGTGACAGGGCTGAACTGGGGTTGTGACATTTCACGCAGGGTTGGATTGATATGCAGCTGCGAACGGTAGCATACACTCATTGTTCTCATCCAATACAAATAATTTGGAAACAATCAAA] [+] EMBL CNS096EX [ACTGGCTCAGTTTTTCCATGTTGCGGAACAGGCGCTCGGAAACCAGCACAGCGGAAAATTGGACGATGCAATTCTGTGTGATCACTACCACCAACCAACAATCATCGCCACACGCTTCTTATAATATCGTAATGCGCAACAGCCTTCGACGGGACAACTGAAAGTATAACGAAATGATGTTAGTAGCCGCCTAACCATCCTCACCCTTACACACGTACCATTATATCCCAGGAAAGTGATATAGATGTAGTATCCGAGCGCCAACAGCCAAATGGTGTTGCCGATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTA CCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAGTGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGAGGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCA CGAAAATTGCTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGTAATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTTGCTCCGGG ] [-] EMBL CNS096EY [ CAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAGTGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGAGGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCAGCG AAATTGCTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTG TTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATCTTTTCGTCACTCATCGCTCCGTAGACGGAAAATTATATTTTGGTAAACAGTAAATAACTGCACGTCGATGACGGATCGTGACAGGGCTGAACTGGGGTTGTGACATTTCACGCAGGGTTGGATTGATATGCAGCTGCGAACGGTAGCATACACTCATTGTTCTCATCCAATACAAATAATTTGGAAACAATCAAA] consensusID : consensus_6498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 724 fasta sequence [ATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTTGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATNTTATCGTCACTCATC] [-] EMBL BX627388 [ATGAACGTTGATATGAACCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTTGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCG ] [-] EMBL BX626253 [ TTGATATGANCCAGTCCCTGCTAATTAGCGGATGGTAGAAGANCAGCTGTATGAAATGCAGCAGTATCAGGGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTCGCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCATGCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAACCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACACAAAGGCAACCCACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACACCATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTATTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGGCGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTCGTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATNTTATCGTCACTCATC] [-] EMBL BM644657 [ aGGTGCGATGAATAGGTACACCATTTGCCACATTGCATACTCAAAGTCCATTTGGTAGAATTTGATGAAACGCCGCAGGTATTTGTACCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGTCCGGTGCGGGCAGCGGCGATGCCGTTGTGGAAGACATCCCCAGCAGCGAGCTGTTGCTCCGGGATGGCGTAGGTGACGTAGCGTACTTCATGCCTGCGCTATGTGTGTCGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6498#0 ACTGGCTCAGTTTTTCCATGTTGCGGAACAGGCGCTCGGAAACCAGCACAGCGGAAAATT 60 consensus_6498#1 ------------------------------------------------------------ consensus_6498#0 GGACGATGCAATTCTGTGTGATCACTACCACCAACCAACAATCATCGCCACACGCTTCTT 120 consensus_6498#1 ------------------------------------------------------------ consensus_6498#0 ATAATATCGTAATGCGCAACAGCCTTCGACGGGACAACTGAAAGTATAACGAAATGATGT 180 consensus_6498#1 ------------------------------------------------------------ consensus_6498#0 TAGTAGCCGCCTAACCATCCTCACCCTTACACACGTACCATTATATCCCAGGAAAGTGAT 240 consensus_6498#1 ------------------------------------------------------------ consensus_6498#0 ATAGATGTAGTATCCGAGCGCCAACAGCCAAATGGTGTTGCCGATGAACGTTGATATGAA 300 consensus_6498#1 -------------------------------------------ATGAACGTTGATATGAA 17 ***************** consensus_6498#0 CCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAG 360 consensus_6498#1 CCAGTCCCTGCTAATTAGCGGATGGTAGAAGAACAGCTGTATGAAATGCAGCAGTATCAG 77 ************************************************************ consensus_6498#0 GGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTA-CCCCACTCCATGTCGAAGTC 419 consensus_6498#1 GGGCGGGAAGAACGCATTCAAATGCACATCGAACGCGTAGCCCCACTCCATGTCGAAGTC 137 *************************************** ******************** consensus_6498#0 GCTGTTTCGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCAT 479 consensus_6498#1 GCTGTTTTGATCGCGAAAGTAGCGATTCGCAATCACCCAAAGCAGCGTGGCCACGATCAT 197 ******* **************************************************** consensus_6498#0 GCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAA 539 consensus_6498#1 GCCGCAGAATATGCAGTCAACAAACACGACGTACAGTGTGAACAGGATCGTCTGCAGAAA 257 ************************************************************ consensus_6498#0 CCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGACTGAAAGCGGACAATGGGGCAG 599 consensus_6498#1 CCCTAAGCTTAACACCCACGCGAACCCAATTGACGTGAC--------------------- 296 *************************************** consensus_6498#0 TGGTTAGTACGAAATGGAAAGCTTCCTCCCGTTGATAACAACATACCACAAAGGCAACCC 659 consensus_6498#1 -----------------------------------------------ACAAAGGCAACCC 309 ************* consensus_6498#0 ACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTTCTGCAAGA 719 consensus_6498#1 ACTAGCAACACCAGGAAGGCTGGATCATCTCGAGCAAATTGTGATTTGGTTT-------- 361 **************************************************** consensus_6498#0 GGGAAACAATAACCGATTAGAAGTGGATCCCAAACGGCCCAAAACGGCGCACGAAAATTG 779 consensus_6498#1 ------------------------------------------------------------ consensus_6498#0 CTCACGTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACAC 839 consensus_6498#1 -----GTTTGCGGTAGTTGAAGTTGCGATAGACTTTCTTCGGTGCGATGAATAGGTACAC 416 ******************************************************* consensus_6498#0 CATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGTAA 899 consensus_6498#1 CATCTGCCACATTGCATACTCAAAGTCCATTTGGTCGAATTTGATGAAACGCCGCAGGTA 476 ********************************************************* * consensus_6498#0 TTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGG 959 consensus_6498#1 TTTGTAGCTTTTCGTTGTGGCGCTCATGCAATCGCGATAGTTGGCCGGTGCGGGCAGTGG 536 ************************************************************ consensus_6498#0 CGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTTTGCTCCGGGATGGCGTAGGTG 1019 consensus_6498#1 CGATGCCGTTCTGGAAGACATCCCCAGCAGCGAGCTGTT-GCTCCGGGATGGCGTAGGTG 595 *************************************** ******************** consensus_6498#0 ACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTC 1079 consensus_6498#1 ACGTAGCGTACTTCATTCCTGCGCTATGTGTGTCGCTGTCGATGAGTTTCTTACTACTTC 655 ************************************************************ consensus_6498#0 GTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATCTTTTCG 1139 consensus_6498#1 GTCTGCTGACTCCTTTGGTAAAATTCGAGAATGGACACAGCAATTCAGTGGATNTTATCG 715 ***************************************************** ** *** consensus_6498#0 TCACTCATCGCTCCGTAGACGGAAAATTATATTTTGGTAAACAGTAAATAACTGCACGTC 1199 consensus_6498#1 TCACTCATC--------------------------------------------------- 724 ********* consensus_6498#0 GATGACGGATCGTGACAGGGCTGAACTGGGGTTGTGACATTTCACGCAGGGTTGGATTGA 1259 consensus_6498#1 ------------------------------------------------------------ consensus_6498#0 TATGCAGCTGCGAACGGTAGCATACACTCATTGTTCTCATCCAATACAAATAATTTGGAA 1319 consensus_6498#1 ------------------------------------------------------------ consensus_6498#0 ACAATCAAA 1328 consensus_6498#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||