These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 956 fasta sequence [CCCCGAGGTTTNTTTTGGACGAAGCGGACAAAATGTCAACATGGGATTTGAGCCTCAAGTTCGTTCGATCTGCAACCATATTCGACCTGATCGGCAGACACTTTTATTCAGTGCTACTTTCAAAAAACGTGTGGAACTTGCACGCGATGTGTTAACCGATCCCGTTCGCATAATTCACGGTGACTTGGGGGAAGCAAATTCTGATGTAACGCAACGTATTATTCTTTTACCAACAGTACAAAGCAAGTGGAACTGGTTGTTAACGAACCTTGTAAAAATGCGTTTCTGAGGGAAGCTGTACTTGAGTACTTTGGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGCTTGAACGGATAATGATGTCGTCTTACTCTCACTGGANATATGGACCAATCAGAACGAAA-TTTGTTATCACCAGACTTTCAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAAGGAAAGAATTTAAATGTAGGTGGTGCAGGATTAGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTAGATGCTTCAAAGGTTCTTGTAGAAGACGGGGATCCTTCAGGACCATCGCCGGGGTCATCGAAGGGTCCTGCTACTGATCGTTTATCGGCAATGCGAGAAACTTTTCGCGCTCATTATAATGCACA] [+] EMBL AL929679 [CCCCGAGGTTTNTTTTGGACGAAGCGGACAAAATGTCAACATGGGATTTGAGCCTCAAGTTCGTTCGATCTGCAACCATATTCGACCTGATCGGCAGACACTTTTATTCAGTGCTACTTTCAAAAAACGTGTGGAACTTGCACGCGATGTGTTAACCGATCCCGTTCGCATAATTCACGGTGACTTGGGGGAAGCAAATTCTGATGTAACGCAACGTATTATTCTTTTACCAACAGTACAAAGCAAGTGGAACTGGTTGTTAACGAACCTTGTAAAAATGCGTTTCTGAGGGAAGCTGTACTTGAGTACTTTGGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGCTTGAACGGATAATGATGTCGTCTTACTCTCACTGGANATATGGACCAATCAGAACGAAA TTTGTTATCACCAGACTTTCAAACGGAAAGATGTCGATATCATGGTAGCCACGGA ] [+] EMBL BM648190 [ ccGAAACCGCAAATAATCTGCGG TTGAA GGATAATGATGTCGTCTTACT TCA TGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGA TTT AAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAAGGAAAGAATTTAAATGTAGGTGGTGCAGGATTAGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTAGATGCTTCAAAGGTTCTTGTAGAAGACGGGGATCCTTCAGGACCATCGCCGGGGTCATCGAAGGGTCCTGCTACTGATCGTTTATCGGCAATGCGAGAAACTTTTCGCGCTCATTATAATGCACA] consensusID : consensus_6502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 858 fasta sequence [TCCCCCGAGTTAACGCAAATATCTGCGGTTGCAAGGATAATGATGTCGTCTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCTGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAANGACACAAGAATTTTCTTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCCGGAAGATTTGATGAAACTTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTAAACACGCGAACAAAGGAAAGAATTTGAAACTGTAGTGGTGCAGGATTAGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTACATGCTTCCAACGGTTCTTGTAAAAGACGGGGGAATCCTTTCAGGGAAACCATCGCCGGGGGNTCCATCCGACAGGGGTCCCTGGCTAACTTGAGTCTCGATACAAATTCGGACAGAGTGCGACGAAAACCTTATCACGCGCCTCCACATTTATACTTGCNNCCAGTTGAAAGGCCATTAAAGCGGAATCATAAAACCGTGTGGAAAATACACCGTNTTCCGGAAGGGTGGGTGTATGATAATTAAAGCCAGGGACACACCAGGGNNGAAAACCGCCGCCCAACANTCGCTTCAATCCCNTACTATCACACAGTTGATCACAGCCGTGAANAATAAAAGGTGGCACTCANNTAATCA] [+] EMBL AL932230 [TCCCCCGAGTTAACGCAAATATCTGCGGTTGCAAGGATAATGATGTCGTCTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCTGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAANGACACAAGAATTTTCTTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTACCCGGAAGATTTGATGAAACTTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTAAACACGCGAACAAAGGAAAGAATTTGAAACTGTAGTGGTGCAGGATTAGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCGTTCACTACATGCTTCCAACGGTTCTTGTAAAAGACGGGGGAATCCTTTCAGGGAAACCATCGCCGGGGGNTCCATCCGACAGGGGTCCCTGGCTAACTTGAGTCTCGATACAAATTCGGACAGAGTGCGACGAAAACCTTATCACGCGCCTCCACATTTATACTTGCNNCCAGTTGAAAGGCCATTAAAGCGGAATCATAAAACCGTGTGGAAAATACACCGTNTTCCGGAAGGGTGGGTGTATGATAATTAAAGCCAGGGACACACCAGGGNNGAAAACCGCCGCCCAACANTCGCTTCAATCCCNTACTATCACACAGTTGATCACAGCCGTGAANAATAAAAGGTGGCACTCANNTAATCA] consensusID : consensus_6502#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [AATCGNCACGAGGTGTNAAACTGGTTGTTACGAACCTTGCTAAAAATGCTTTCTGAGGGAAGTGTATTGATATTTGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGTTGAAGGATAATGATGTCGTTTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTGCCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAACGGAAAGANTTTAAATGTAGGTANGTGCAGGATTACGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGGGTCGGTTCACTAGAT] [+] EMBL BX469654 [AATCGNCACGAGGTGTNAAACTGGTTGTTACGAACCTTGCTAAAAATGCTTTCTGAGGGAAGTGTATTGATATTTGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGTTGAAGGATAATGATGTCGTTTTACTTCATGGAGATATGGACCAATCAGAACGAAATTTTGTTATCACCAGATTTAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACAAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTGCCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAACGGAAAGANTTTAAATGTAGGTANGTGCAGGATTACGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGGGTCGGTTCACTAGAT] [+] EMBL BX610630 [ GAAAGATGTCGATATCATGGTAGCCACGGATGTGGCAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTGATATCGATACTCACACACACCGTATTGGCCGCACTGGACGCGCCGGTGAGAAAGGTACGGCGTATACTCTAATTACCGACGAGGACAAAGAATTTTCTGGGCATCTGGTACGCAATCTTGAAGGAGCAAATCAAGATGTGCCGGAAGATTTGATGAAACTGGCAATGCAAAGTTCATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAA GGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6502#0 CCCCGAGGTTTNTTTTGGACGAAGCGGACAAAATGTCAACATGGGATTTGAGCCTCAAGT 60 consensus_6502#2 ------------------------------------------------------------ consensus_6502#1 ------------------------------------------------------------ consensus_6502#0 TCGTTCGATCTGCAACCATATTCGACCTGATCGGCAGACACTTTTATTCAGTGCTACTTT 120 consensus_6502#2 ------------------------------------------------------------ consensus_6502#1 ------------------------------------------------------------ consensus_6502#0 CAAAAAACGTGTGGAACTTGCACGCGATGTGTTAACCGATCCCGTTCGCATAATTCACGG 180 consensus_6502#2 ------------------------------------------------------------ consensus_6502#1 ------------------------------------------------------------ consensus_6502#0 TGACTTGGGGGAAGCAAATTCTGATGTAACGCAACGTATTATTCTTTTACCAACAGTACA 240 consensus_6502#2 --------------------------------------------------AATCGNCACG 10 consensus_6502#1 ------------------------------------------------------------ consensus_6502#0 AAGCAAGTGGAACTGGTTGTTAACGAACCTTG-TAAAAATGCGTTTCTGAGGGAAGCTGT 299 consensus_6502#2 AGGT--GTNAAACTGGTTGTTA-CGAACCTTGCTAAAAATGC-TTTCTGAGGGAAG-TGT 65 consensus_6502#1 ------------------------------------------------------------ consensus_6502#0 ACTTGAGTACTTTGGTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGGC 359 consensus_6502#2 ATT--GATATTT--GTAACTAAAAAAGCTGATGCAGAAGAAACCGCAAATAATCTGCGG- 120 consensus_6502#1 ------------------------------TCCCCCGAGTTAACGCAAATA-TCTGCGG- 28 * ** * ******** ******* consensus_6502#0 TTGAACGGATAATGATGTCGTCTTACTCTCACTGGANATATGGACCAATCAGAACGAAAT 419 consensus_6502#2 TTGAA-GGATAATGATGTCGTTTTACT-TCA-TGGAGATATGGACCAATCAGAACGAAAT 177 consensus_6502#1 TTGCAAGGATAATGATGTCGTCTTACT-TCA-TGGAGATATGGACCAATCAGAACGAAAT 86 *** * *************** ***** *** **** *********************** consensus_6502#0 TT-GTTATCACCAGACTTTCAAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGG 478 consensus_6502#2 TTTGTTATCACCAGATTT--AAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGG 235 consensus_6502#1 TTTGTTATCACCAGATTT--AAACGGAAAGATGTCGATATCATGGTAGCCACGGATGTGG 144 ** ************ ** **************************************** consensus_6502#0 CAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTG 538 consensus_6502#2 CAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTG 295 consensus_6502#1 CAGCTCGCGGGTTAGATATTCCACACATTCGAACAGTAGTCAATTACGATATTGCTCGTG 204 ************************************************************ consensus_6502#0 ATATCGATACTCACACACACCGTATTGGCC-GCACTGGACGCGCCGGTGAGAAAGGTACG 597 consensus_6502#2 ATATCGATACTCACACACACCGTATTGGCC-GCACTGGACGCGCCGGTGAGAAAGGTACG 354 consensus_6502#1 ATATCGATACTCACACACACCGTATTGGCCTGCACTGGACGCGCCGGTGAGAAAGGTACG 264 ****************************** ***************************** consensus_6502#0 GCGTATACTCTAATTACCGACAAGGACA-AAGAATTTTCT-GGGCATCTGGTACGCAATC 655 consensus_6502#2 GCGTATACTCTAATTACCGACAAGGACA-AAGAATTTTCT-GGGCATCTGGTACGCAATC 412 consensus_6502#1 GCGTATACTCTAATTACCGACAANGACACAAGAATTTTCTTGGGCATCTGGTACGCAATC 324 *********************** **** *********** ******************* consensus_6502#0 TTGAAGGAGCAAATCAAGATGTACC-GGAAGATTTGATGAAACT-GGCAATGCAAAGTTC 713 consensus_6502#2 TTGAAGGAGCAAATCAAGATGTGCC-GGAAGATTTGATGAAACT-GGCAATGCAAAGTTC 470 consensus_6502#1 TTGAAGGAGCAAATCAAGATGTACCCGGAAGATTTGATGAAACTTGGCAATGCAAAGTTC 384 ********************** ** ****************** *************** consensus_6502#0 ATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAA-GGAAAGAATTTAAATGTAGGT- 771 consensus_6502#2 ATGGTTTCGGAACAGCCGTTTTAAACACGCGAACAAACGGAAAGANTTTAAATGTAGGTA 530 consensus_6502#1 ATGGTTTCGGAACAGCCGTTT-AAACACGCGAACAAA-GGAAAGAATTTGAAACTGTAGT 442 ********************* *************** ******* *** ** * consensus_6502#0 GGTGCAGGATTA-GGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCG-TTCAC 829 consensus_6502#2 NGTGCAGGATTACGGGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGGGTCGGTTCAC 590 consensus_6502#1 GGTGCAGGATTA--GGTTCCGCCAACGGGCAATTCAGCGTGGTCCAATGAATCG-TTCAC 499 *********** *********************************** *** ***** consensus_6502#0 TAGATGCTTCAAA-GGTTCTTGTAGAAGACGGGGA---TCCTTCAGG---ACCATCGCCG 882 consensus_6502#2 TAGAT------------------------------------------------------- 595 consensus_6502#1 TACATGCTTCCAACGGTTCTTGTAAAAGACGGGGGAATCCTTTCAGGGAAACCATCGCCG 559 ** ** consensus_6502#0 GGGTCATCG------AAGGGTCCT--GCTA--CTGATCGTTTATCGGCAATGCGAGAAAC 932 consensus_6502#2 ------------------------------------------------------------ consensus_6502#1 GGGGNTCCATCCGACAGGGGTCCCTGGCTAACTTGAGTCTCGATACAAATTCGGACAGAG 619 consensus_6502#0 TTTT-CGCGCTCATTATAATGCACA----------------------------------- 956 consensus_6502#2 ------------------------------------------------------------ consensus_6502#1 TGCGACGAAAACCTTATCACGCGCCTCCACATTTATACTTGCNNCCAGTTGAAAGGCCAT 679 consensus_6502#0 ------------------------------------------------------------ consensus_6502#2 ------------------------------------------------------------ consensus_6502#1 TAAAGCGGAATCATAAAACCGTGTGGAAAATACACCGTNTTCCGGAAGGGTGGGTGTATG 739 consensus_6502#0 ------------------------------------------------------------ consensus_6502#2 ------------------------------------------------------------ consensus_6502#1 ATAATTAAAGCCAGGGACACACCAGGGNNGAAAACCGCCGCCCAACANTCGCTTCAATCC 799 consensus_6502#0 ----------------------------------------------------------- consensus_6502#2 ----------------------------------------------------------- consensus_6502#1 CNTACTATCACACAGTTGATCACAGCCGTGAANAATAAAAGGTGGCACTCANNTAATCA 858 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||