cluster # 6504

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Anopheles gambiae
cluster # 6504 cluster # 6504 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6504#0 length = 961 sequences # 3

consensus_6504#1 length = 415 sequences # 2

consensusID : consensus_6504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 961
fasta sequence

                              [CCGCGAGGAGCAGTGCGCATCAATTGTGTCGTGTCGTTCGTGTAAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTGTACAACATTCGCCGTA-C-CAGCACTACTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCACCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTATGCGTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTTAAAAAA-----AAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCGCCTGTCGCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATCGGCACCGGTAGCATCACGGGTGGCGCAGTCGGCGGAGGCCTGACCGGCGGTACAGGGCTGGCCGGTGGAGGTGGCGTTGGTGGAGGCGGCGGCGTCGGTGGCGGTGGCGGTGGCACCGGTCAGCTCAACTCGCCGCCACTGCTGGAGACGGAGCTGGACCTGCACTTCAGCCTGCAGTATCCGCATTTCATCAAGCGCGACGGCAACCGGTTGCTGATACTGCTGCAGCGCCGCAAAAAGTACAAAACGCGCACCATCCTCGGCTACAAGACGCTGGCCGAGGGCGTGATCCGGATGGACGCGGT]

[+] EMBL BM618631             [CCGCGAGGAGCAGTGCGCATCAATTGTGTCGTGTCGTTCGTGTAAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTGTACAACATTCGCCGTA C CAGCACTACTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCACCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTATGCGTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTTAAAAAA     AAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCG CTGTCGCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAG                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM595390             [                                                       ccgGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTGTGCCTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTAAAAAAAAGAAGAAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCGCCTGTCCCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTTCGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATCGGCACCGGTAGCATCACGGGTGGCGC                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM633294             [                                                                                                                                                                                                                                                                                                                                                        ccgCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCATCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCGCCTGTCGCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATCGGCACCGGTAGCATCACGGGTGGCGCAGTCGGCGGAGGCCTGACCGGCGGTACAGGGCTGGCCGGTGGAGGTGGCGTTGGTGGAGGCGGCGGCGTCGGTGGCGGTGGCGGTGGCACCGGTCAGCTCAACTCGCCGCCACTGCTGGAGACGGAGCTGGACCTGCACTTCAGCCTGCAGTATCCGCATTTCATCAAGCGCGACGGCAACCGGTTGCTGATACTGCTGCAGCGCCGCAAAAAGTACAAAACGCGCACCATCCTCGGCTACAAGACGCTGGCCGAGGGCGTGATCCGGATGGACGCGGT]




>consensus_6504#0
CCGCGAGGAGCAGTGCGCATCAATTGTGTCGTGTCGTTCGTGTAAAACCCGTGCTAATGT
AAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTGTACAAC
ATTCGCCGTACCAGCACTACTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCA
CCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGT
AAAAGTGTCTGTATGCGTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGA
AGTCTAACTTAAAAAAAAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACACAA
AACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCA
AACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACTGCA
TTCCAAGATTATGTTCGTTAAAAATTACCCGCCTGTCGCTGCTCACACCCCTGCCGGCCG
ATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGC
ACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATCGGCA
CCGGTAGCATCACGGGTGGCGCAGTCGGCGGAGGCCTGACCGGCGGTACAGGGCTGGCCG
GTGGAGGTGGCGTTGGTGGAGGCGGCGGCGTCGGTGGCGGTGGCGGTGGCACCGGTCAGC
TCAACTCGCCGCCACTGCTGGAGACGGAGCTGGACCTGCACTTCAGCCTGCAGTATCCGC
ATTTCATCAAGCGCGACGGCAACCGGTTGCTGATACTGCTGCAGCGCCGCAAAAAGTACA
AAACGCGCACCATCCTCGGCTACAAGACGCTGGCCGAGGGCGTGATCCGGATGGACGCGG
T

consensusID : consensus_6504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [AAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAATGGCCCACGGGTGACGGAGGTTGGAGCTTCTTCTTCTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTGTTAGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCAGTTAGTGCGCGTGTGTTTATCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTGTGCCTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTAAAAAAAA]

[+] EMBL AGA282357            [AAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAATGGCCCACGGGTGACGGAGGTTGGAGCTTCTTCTTCTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTGTTAGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCAGTTAGTGCGCGTGTGTTTATCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTC                                                                    ]
[-] EMBL AGA280734            [                                                   GCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAATGGCCCACGGGTGACGGAGGTTGGAGCTTCTTCTTCTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTGTTAGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCAGTTAGTGCGCGTGTGTTTATCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTGTGCCTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTAAAAAAAA]




>consensus_6504#1
AAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGC
AGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAATGGCCCACGGGTGACGG
AGGTTGGAGCTTCTTCTTCTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGC
GTGTTAGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCAGTTAGTGCGCGTGTGTTTATC
AAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCG
TTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTGTGCCTGTGC
GCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6504#0      CCGCGAGGAGCAGTGCGCATCAATTGTGTCGTGTCGTTCGTGTAAAACCCGTGCTAATGT 60
consensus_6504#1      -------------------------------------------AAAACCCGTGCTAATGT 17
                                                                 *****************

consensus_6504#0      AAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTGTACAAC 120
consensus_6504#1      AAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAAC 77
                      ***************************************************** ******

consensus_6504#0      ATTCGCCGTACCA--GCACTACTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACC 178
consensus_6504#1      ATTCGCCGTAGCACAGCACTATTCAA--TGG-CCCACGGGTGACGGAGGTTGGAGCTTCT 134
                      ********** **  ****** ****  **  ***  ******            *  * 

consensus_6504#0      CACCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTT 238
consensus_6504#1      TCTT-----------CTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTG 183
                                     *  ** *      *    ** * * **   *  * *  *   ** 

consensus_6504#0      GTAAAAGTGTCTGTATGCGTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAA 298
consensus_6504#1      TT---AGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCA-GTTAGTGCGCGTGTGTTTAT 239
                       *   ***** *** ** *** **  ***** *     * **   ** *******   * 

consensus_6504#0      GAAGTCTAACTTAAAAAAAAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACAC 358
consensus_6504#1      CAAATTGATCCC--------GTGGGTGAAAAGTA----CGCCCACCA--CCCCCCGGCAA 285
                       ** *  * *          *  *  *** ***      * **   *  * * *   ** 

consensus_6504#0      AAAACGCAACGTCCGCGCGATGGCCGACAAAGGAA-CGAAATTCGAACGGATGGCCATGA 417
consensus_6504#1      AAAGGGC----CCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATG----TTG 337
                      ***  **     ** * ** ***  * ***  *** **** * **  ** ***    *  

consensus_6504#0      CCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACT 477
consensus_6504#1      TAAAA---GTGTCTGTGTGCCTGTGCGC----------GTGTGTGTGTCTATGTGTATGT 384
                        ***   **  *  **   **** ***          ***     * *   **  *  *

consensus_6504#0      GCATTCCAAGATTATGTTCG-TTAAAAATTACCCGCCTGTCGCTGCTCACACCCCTGCCG 536
consensus_6504#1      GCGTGTGAAAAAGAAGTCTAACTAAAAAAAA----------------------------- 415
                      ** *   ** *  * **     ******  *                             

consensus_6504#0      GCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGC 596
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      TCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATC 656
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      GGCACCGGTAGCATCACGGGTGGCGCAGTCGGCGGAGGCCTGACCGGCGGTACAGGGCTG 716
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      GCCGGTGGAGGTGGCGTTGGTGGAGGCGGCGGCGTCGGTGGCGGTGGCGGTGGCACCGGT 776
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      CAGCTCAACTCGCCGCCACTGCTGGAGACGGAGCTGGACCTGCACTTCAGCCTGCAGTAT 836
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      CCGCATTTCATCAAGCGCGACGGCAACCGGTTGCTGATACTGCTGCAGCGCCGCAAAAAG 896
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      TACAAAACGCGCACCATCCTCGGCTACAAGACGCTGGCCGAGGGCGTGATCCGGATGGAC 956
consensus_6504#1      ------------------------------------------------------------
                                                                                  

consensus_6504#0      GCGGT 961
consensus_6504#1      -----