cluster # 6509

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Anopheles gambiae
cluster # 6509 cluster # 6509 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6509#0 length = 800 sequences # 2

consensus_6509#1 length = 599 sequences # 2
consensus_6509#2 length = 136 sequences # 1

consensusID : consensus_6509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 800
fasta sequence

                              [CAAGAATCGCCCGAGGTTCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATCGCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGTGGTGACGACCAACAGTTTCAAGA-TGTATCAATTGGAACCCGCTA-CGAAACCGAGACGTAGCCATATCTTCGACCGTGAAAAATGGAGCAAGATTCCCAGACAGGAAGCCANACNGATCATCTAACTCCACCATCCTGAATGTGCCATTACAACTAGTTGTTTACCTATNTGTGCAGATGGTTGTACTAATCAACATAGCAAATACTGCGTGATCTGNACTCTAACGGACACACAACTNANCANTAANNCACAATGTTNCA]

[+] EMBL AL931252             [CAAGAATCGCCCGAGGTTCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATCGCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGTGGTGACGACCAACAGTTTCAAGA TGTATCAATTGGAACCCGCTA CGAAACCGAGACGTAGCCATATCTTCGACCGTGAAAAATGGAGCAAGATTCCCAGACAGGAAGCCANACNGATCATCTAACTCCACCATCCTGAATGTGCCATTACAACTAGTTGTTTACCTATNTGTGCAGATGGTTGTACTAATCAACATAGCAAATACTGCGTGATCTGNACTCTAACGGACACACAACTNANCANTAANNCACAATGTTNCA]
[+] EMBL BX628462             [                                           TTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATCGCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACG AACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGTGGTGACGACCAACAGTTTCAAGATTGTATCAATTGGAACCCGCTACCGAAACCGAGACGTAGCCATAT TTTGAC   GGAAAATGGAGC AGATTCCCAG CAGGAAG CA AC GAT ATCTAA TCCACCATCCTGAt                                                                                                                         ]




>consensus_6509#0
CAAGAATCGCCCGAGGTTCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGC
ACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATC
GCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATC
AATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAA
ACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAA
ATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGAT
AGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGA
TCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAAC
GCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGT
GGTGACGACCAACAGTTTCAAGATGTATCAATTGGAACCCGCTACGAAACCGAGACGTAG
CCATATCTTCGACCGTGAAAAATGGAGCAAGATTCCCAGACAGGAAGCCANACNGATCAT
CTAACTCCACCATCCTGAATGTGCCATTACAACTAGTTGTTTACCTATNTGTGCAGATGG
TTGTACTAATCAACATAGCAAATACTGCGTGATCTGNACTCTAACGGACACACAACTNAN
CANTAANNCACAATGTTNCA

consensusID : consensus_6509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence

                              [CCGCCGAAAGCAGCCCTCCCATCAACCACCGAGGAGGGAGATGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCACAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACGATCGCAAACGAAAGCGGCAACAACGATAGGCGCCGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGGTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGC]

[+] EMBL BM580285             [CCGCCGAAAGCAGCCCTCCCATCAACCACCGAGGAGGGAGATGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCACAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACGATCGCAAACGAAAGCGGCAACAACGATAGGCGCCGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGGTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGC]
[+] EMBL BM643701             [                                     GAGACGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACGATCGCGAACGAAAGCGGCAACAACGATAGGCGCCGCTCTGTTAGAGATA                                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_6509#1
CCGCCGAAAGCAGCCCTCCCATCAACCACCGAGGAGGGAGATGACGATGAAGGTCCAACA
ACCACGATCATAGTGGATAACTTGCGGTACAAGCACAAGGTGGCTCCAATTCATACCGAG
ATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCA
ACGATCGCAAACGAAAGCGGCAACAACGATAGGCGCCGCTCTGTTAGAGATATTATCGAG
TCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTG
CACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAA
AGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAA
GGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGT
CGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAA
AATAACGCTGCTTCGGGGTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGC

consensusID : consensus_6509#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [ACCCGCTACCGAAACCGAGACGTAGCCATATTTTGACGGAAAATGGAGCAGAATCCCAGCAGGAAGCAACGATATCTAATCCACCATCCTGATGTGCCTTCAACTAGTTGTTTACCTATTTGGTCGATGTTGTACT]

[+] EMBL BX612556             [ACCCGCTACCGAAACCGAGACGTAGCCATATTTTGACGGAAAATGGAGCAGAATCCCAGCAGGAAGCAACGATATCTAATCCACCATCCTGATGTGCCTTCAACTAGTTGTTTACCTATTTGGTCGATGTTGTACT]




>consensus_6509#2
ACCCGCTACCGAAACCGAGACGTAGCCATATTTTGACGGAAAATGGAGCAGAATCCCAGC
AGGAAGCAACGATATCTAATCCACCATCCTGATGTGCCTTCAACTAGTTGTTTACCTATT
TGGTCGATGTTGTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6509#0      CAAGAATCGCCCGAGGTTCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGC 60
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      ------------------------------------------------------------
                                                                                  

consensus_6509#0      ACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATC 120
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      ------------------------------------------------------------
                                                                                  

consensus_6509#0      GCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATC 180
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      ------------------------------------------------------------
                                                                                  

consensus_6509#0      AATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAA 240
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      -----------------------CCGCCGAAAGCAGCCCTCCCATCAACCACCGAGGAGG 37
                                                                                  

consensus_6509#0      ACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAA 300
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      GAGATGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCACA 97
                                                                                  

consensus_6509#0      ATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGAT 360
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      AGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAA 157
                                                                                  

consensus_6509#0      AGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGA 420
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      GTGAATCTACCGGCAACCTCCCAACGATCGCAAACGAAAGCGGCAACAACGATAGGCGCC 217
                                                                                  

consensus_6509#0      TCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAAC 480
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      GCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACC 277
                                                                                  

consensus_6509#0      GCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGT 540
consensus_6509#2      ------------------------------------------------------------
consensus_6509#1      ACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACA 337
                                                                                  

consensus_6509#0      GGTGACGACCAACAGTTTCAAGATGTATCAATTGGAACCCGCTAC--GAAACCGAGACGT 598
consensus_6509#2      ------------------------------------ACCCGCTACC-GAAACCGAGACGT 23
consensus_6509#1      TACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACAC 397
                                                          **  *** *  ** * *** **  

consensus_6509#0      AGCCATATCTTCGACCGTGAAAAATGGAGCAAGATTC----CCAGACAGGAAGCCANACN 654
consensus_6509#2      AGCCATATTTT-GAC---GGAAAATGGAGCAGAATCC----C--AGCAGGAAGCAACGAT 73
consensus_6509#1      -GCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGC 456
                       ** **       *    *  *** *    *  *  *    *      *  * *      

consensus_6509#0      GATCATCTAAC----TCCACCATCCT--GAATGTGCCATTACAACTAGTTGTTTACCTAT 708
consensus_6509#2      ----ATCTAA-----TCCACCATCCT--GA-TGTGCCTT--CAACTAGTTGTTTACCTAT 119
consensus_6509#1      GAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAAT 516
                           ** **     ***  *   *   **  ** *  *   ****    *  *    **

consensus_6509#0      NTGTGCAGATGGTTGTACTAATCAACATAGCAAATACTGCGTGATCTGNACTCTAACGGA 768
consensus_6509#2      TTG-GTCGATG-TTGTACT----------------------------------------- 136
consensus_6509#1      CTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGGTTCCGCGTTAAGAAAAGT 576
                       *          *** **                                          

consensus_6509#0      CACACAACTNANCANTAANNCACAATGTTNCA 800
consensus_6509#2      --------------------------------
consensus_6509#1      CCCACCAAAACGGTGCTCATTGC--------- 599