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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1000 fasta sequence
[CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAACTCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGATTGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTGAAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCAAGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACA-GATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT]
[+] EMBL BM600865 [CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAACTCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGATTGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTGAAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCAAGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAATCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTACAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTG AAAAG AAACCATAT ]
[+] EMBL BM594248 [ ccgGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACAGCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACA GATGACTGATCGAAAA ]
[+] EMBL BM635105 [ ccgCAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAAC ]
[+] EMBL BM640937 [ ccgGTACAGCGTAAAATTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGTTTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCATATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGCTCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACCATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACTGTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGTTGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAAAAAAAAAACACACAGTATGTCCAGTTAACCTGTGTGAAAGTCCGAAGAACACAAATGAACGCGCAAGAGATATATTTATTTTCACCGATAGTGGCAGCTACAATAGTGTTGAAGGAATTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCGGTTCACCGAAGAACACACAGACAGGATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT]
consensusID : consensus_6518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence
[GTCGAGGGCCAAGAATCGCCACGAGGNNTAGAAATGAAAATAGTTGCAAGTTCTAAACTCGTTGTAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGAACAAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGNAACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTAGGTGTNTGAAGGGAAGTTATTGTAACTAGAT]
[+] EMBL BX469271 [GTCGAGGGCCAAGAATCGCCACGAGGNNTAGAAATGAAAATAGTTGCAAGTTCTAAACTCGTTGTAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGAACAAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGNAACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTAGGTGTNTGAAGGGAAGTTATTGTAACTAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6518#0 CCGGTCTCCGCGCTATGTTTGCGGCTCGCTGCGAGGAGTATGTCACTCAGGTTGACGAAC 60
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 TCACGCATCAGCTTGCGGCGGCTGAGGAGGAGAAGAAAACGCTTAATCAGCTACTTCGAT 120
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 TGGCTGTGCAGCAGAAACTTGGACTGACGCAAAAGCTCGAGGAGCTTGAGATGGACCGTG 180
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 AAATGCGCCATGTGCGCCGGCCGGCAGCTTCGCAGCGCGGCGGTGGTGGAGGTGGCGGCA 240
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 AGTCGGCCTTCTCTCGTGGGCAGCCGGCCCGGAACAGCCTTCAGAATCCGAACAGCAACA 300
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 GCAATAGTAACAATCCGAACCAAGCTTTCTTCTAACATAAGGTGAGCGTACAGCGTAAAA 360
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 TTCTAGCGTTCCTTTACACACTTCTTAAGCTGTAAAGGGGGAAGCGCTAGAGGAAAGAGT 420
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 TTGTAGTTTTAGTTAATACAAAGTGGCGGGACGAATAACAACCAAAAATTATCACCATCA 480
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 TATGTGAATCTTTCATCGATCTCCCGTGTGTTATTGAGTTGGTTGTGCATTGTTTTACGC 540
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 TCTTTTTCTTTGCAAAAGATTAGAAAAACGGAGAGCTATGACTAGGTGGTCCGTCCCACC 600
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 ATTTAAATTGTATAATCAAATTCCCACATGGAACGTAACTGACCAGCAGTGAGCAACACT 660
consensus_6518#1 ------------------------------------------------------------
consensus_6518#0 GTTTGAAAAAGAAAACCATATTTCCATCCATTAATGAAACGAACGAGAAATGAAAATAGT 720
consensus_6518#1 --------------GTCG-AGGGCCAAGAATCGCCACGA-GGNNTAGAAATGAAAATAGT 44
* * *** ** * * ***************
consensus_6518#0 TGCAATTTATAAACTCGTTGTAAAACGTACTGATCAGCGTTTGGACGAATGTCGAAGCAA 780
consensus_6518#1 TGCAAGTTCTAAACTCGTTGTAAA-CGTACTGATCAGCGTTTGGACGAATGTCGAAGAAC 103
***** ** *************** ******************************** *
consensus_6518#0 AAAAAAAACACACAGTATGTCCAG-TTAACCTGTGTGAAAGTCCGAAGAACACAAAT--G 837
consensus_6518#1 AAAAAAAAAACACAGTATGTCCAGGTTAACCTGTGTGAAAGTCCGAAGAACACAAGATGN 163
******** *************** ******************************
consensus_6518#0 AACGC--GCAAGAG-ATATA-TTTATTTTC---ACCG--ATAG-TGGCAGCTACAATA-- 885
consensus_6518#1 AACGGCGGCAAGAGCATATAGTTTAGTTGTTCGACCGGGATAGCTGGCAGCTACAGAGTA 223
**** ******* ***** **** ** **** **** ***********
consensus_6518#0 ---GTGTTGAAGGAA-TTATTGTAACTAGATGACTAGCTGAACGAACGAACGTGGCAGCG 941
consensus_6518#1 GGTGTNTGAAGGGAAGTTATTGTAACTAGAT----------------------------- 254
** * * **** ***************
consensus_6518#0 GTTCACCGAAGAACACACAGACAGATGACTGATCGAAAAAAGAACTCTGATGAAGGGAT 1000
consensus_6518#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||