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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 995 fasta sequence
[CCGCGGGGTCAACGCAGCTGGCCGAGCTTGCCAGTGGATGAGTCAAGCGACCTCGTTTCGAAGTCGGGCGAAAACAAAATGAAGGAAATTCCATGTCTGCGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAATCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTCCAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTAGATAGTAACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGGGTATTTCTCTGTTCTGCATTCCATTCATATCAAGCCAAGCGCTAGCTCTGTTCGGAACCATAATGTAATAGGGATATTTCCAAACGAGCGAATGTTAATCTCTGTCGTACTCTCCACATATATCCTGTTTCCGTGTGCGCTTTGCCACACGAGTGCAATTTAGTGCAATCATCCGGGCCCGCGGCCAGCGGAGCATTCAGTTCCTAGAGGCGGCATACATAAAACATGCTGACTTTAGTTTAGTGTACATGACCCGCCACTGTCTCGCTCTCTCTCTCTCTCTCTTTTATGCGCAACTGTACCGCGTAAGCGACCACGTGGAGCTAACCCTCTTTACCGCATGCTCCCGCCGCCACACTTTCCCACGTGCAAACGCCGACTTTTCTCTGTGATCATCA]
[+] EMBL BM575270 [CCGCGGGGTCAACGCAGCTGGCCGAGCTTGCCAGTGGATGAGTCAAGCGACCTCGTTTCGAAGTCGGGCGAAAACAAAATGAAGGAAATTCCATGTCTGCGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAATCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTCCAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTAGATAGTAACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGGGTATTTCTCTGTTCTGCATTCCATT ]
[+] EMBL BX624813 [ AGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAATCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTCCAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTAGATAGTAACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGTGTATTTCTCTGTTCTGCATTCCATTCATATCAAGCCAAGCGCTAGCTCTGTTCGGAACCATAATGTAATAGGGATATTTCCAAACGAGCGAATGTTAATCTCTGTCGTACTCTCCACATATATCCTGTTTCCGTGTGCGCTTTGCCACACGAGTGCAATTTAGTGCAATCATCCGGGCCCGCGGCCAGCGGAGCATTCAGTTCCTAGAGGCGGCATACATAAAACATGCTGACTTTAGTTTAGTGTACATGACCCGCCACTGTCTCGCTCTCTCTCTCTCTCTCTTTTATGCGCAACTGTACCGCGTAAGCGACCACGTGGAGCTAACCCTCTTTACCGCATGCTCCCGCCGCCACACTTTCCCACGTGCAAACGCCGACTTTTCTCTGTGATCATCA]
consensusID : consensus_6523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 843 fasta sequence
[CAGAATNGCCCGAGGTCAAACACAAACAACGTTGTAAGNGCTTACCCTGGCTTAGACCTTAAGTTAAACCGTCGGTCTAGAGTTGAGTTGAGAACATTTGCTGCGCGTGATAAACCACCAACCCTGGTGAAAATGCCCGTGGGAAGTGAAAAGATGAGTGTAGCAGCAGGAAAACTGTTTGGANAAACCGACAAAATCGACATCAAAACAAGGCATCACTTGTTTACCATTTTGAAAAAACAAAGAAGATAAAAAACCGTAGCATCACGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGNGCTGCAACACACGTACAAAATCGTTGCGTACCAATGTATNGTGCAGTTGACGCCTGGACCGAGGAAGAATGTTTAACGCTGTGCACATACGGTGAACCATTATCCATAGGGCTTNACGCANGAGAAGCGCGTGTGCNAAATGGGTGCACATAACATGCTATCTCAGTACATAGAATACGACAGAACAAAAGANAAGGGACTGGAGTCACCAACAAACCACAACCTGTCGATACAAACCANAATNTACCATCTATCGCACCAANNNAGNNAGCANTGCGGCTACTCAGCACAGACTCNGGCCCTCCGAATCCCGAACGGCTACGGGCACCACAAAGACCAAACACTCAACCTTACCACCACTACGCACCAACCCACAACGCCNCTGANGCAACAGAGGCNANAANAACGCAAGAAACGAAACACAACACCACAAGCNANACAAANCCCAAACCTANCCGNAGAAATCATGCACCCAACCACCAAGGCAGCCTGNNCACAAGCNGCCNCCNACATCNCCCTNTCCTGCGACTCAAC]
[+] EMBL AL931237 [CAGAATNGCCCGAGGTCAAACACAAACAACGTTGTAAGNGCTTACCCTGGCTTAGACCTTAAGTTAAACCGTCGGTCTAGAGTTGAGTTGAGAACATTTGCTGCGCGTGATAAACCACCAACCCTGGTGAAAATGCCCGTGGGAAGTGAAAAGATGAGTGTAGCAGCAGGAAAACTGTTTGGANAAACCGACAAAATCGACATCAAAACAAGGCATCACTTGTTTACCATTTTGAAAAAACAAAGAAGATAAAAAACCGTAGCATCACGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGNGCTGCAACACACGTACAAAATCGTTGCGTACCAATGTATNGTGCAGTTGACGCCTGGACCGAGGAAGAATGTTTAACGCTGTGCACATACGGTGAACCATTATCCATAGGGCTTNACGCANGAGAAGCGCGTGTGCNAAATGGGTGCACATAACATGCTATCTCAGTACATAGAATACGACAGAACAAAAGANAAGGGACTGGAGTCACCAACAAACCACAACCTGTCGATACAAACCANAATNTACCATCTATCGCACCAANNNAGNNAGCANTGCGGCTACTCAGCACAGACTCNGGCCCTCCGAATCCCGAACGGCTACGGGCACCACAAAGACCAAACACTCAACCTTACCACCACTACGCACCAACCCACAACGCCNCTGANGCAACAGAGGCNANAANAACGCAAGAAACGAAACACAACACCACAAGCNANACAAANCCCAAACCTANCCGNAGAAATCATGCACCCAACCACCAAGGCAGCCTGNNCACAAGCNGCCNCCNACATCNCCCTNTCCTGCGACTCAAC]
consensusID : consensus_6523#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGATAGGGCTTAACGCAGAGAAGCGCGTGTGCAAATGGGTGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGAAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAGAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGCGAGACAGATCGCATTCGGATTAATTTAAAGCAATTTGAATCTGATTTGTGCCAGCAACTTTTAACGCTTGAAGGCGAACGTGTGTTGTAAAGTGTGCATGTGTGCATGTGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATT]
[+] EMBL BM627038 [CCGATAGGGCTTAACGCAGAGAAGCGCGTGTGCAAATGGGTGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGAAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAGAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGCGAGACAGATCGCATTCGGATTAATTTAAAGCAATTTGAATCTGATTTGTGCCAGCAACTTTTAACGCTTGAAGGCGAACGTGTGTTGTAAAGTGTGCATGTGTGCATGTGTATGTGTGTGCGTGTGCGTGTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAACAAGAAAAAATCATTACATACAACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGCGTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATTTCCCCTCCCCCCCCATT]
consensusID : consensus_6523#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[CCGCGGACGCGTGGGACCACCAACCCTGGGAAAACCCCCACGTGGGAAGGAAAAGATGAGGTAGCAGCAGGAAAATGTTTGGTAAACCGACAAAATCGACATCAAAAAAGGCGCATCATTGTTTAACATTTGAAAAAAAAAGAAGAAGAAAAAACCGTAGCATCGCGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGGCGCCAACACACGTACAAAATCGTTGCCGTACCAATGTTTGTGCAGTTGACGCCGGACCGAGGAAGAATGTTAACGCTGTGCACATACGGCGAACCACTATCCATAGGGCTTAACGCAGAGAAGCGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGGAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAAAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGACGAGACAGATCGCATTCGGATTAATTTAAAGCAATT]
[+] EMBL BM600068 [CCGCGGACGCGTGGGACCACCAACCCTGGGAAAACCCCCACGTGGGAAGGAAAAGATGAGGTAGCAGCAGGAAAATGTTTGGTAAACCGACAAAATCGACATCAAAAAAGGCGCATCATTGTTTAACATTTGAAAAAAAAAGAAGAAGAAAAAACCGTAGCATCGCGTTACCGGCCTGTTTGCAAATATTTTAAGTGTACGGGGTGGCGCCAACACACGTACAAAATCGTTGCCGTACCAATGTTTGTGCAGTTGACGCCGGACCGAGGAAGAATGTTAACGCTGTGCACATACGGCGAACCACTATCCATAGGGCTTAACGCAGAGAAGCGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGATGGAGAAAAACAAAAAACCTGTCGATAAAACAAAATTAAAATTATCGCACTAAAGTAGATGGGTATCAGTTTTGATTGGATTGATTTGATGTCGGACAAAACAAATCACTAGAATAGACAAAAAAGCATTAGCAAAAGCAACAAACAAACAAACACACAAAGCACACAACAATTCTAACGAGATTGTACTAAGAGAAGCAGCTGTAAAGACGAGACAGATCGCATTCGGATTAATTTAAAGCAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6523#1 -----CAGAATNGCCCGAGGTCAAACACAAACAACGTTGTAAGNGCTTACCCTGGCTTAG 55
consensus_6523#3 ------------------------------------------------------------
consensus_6523#2 ------------------------------------------------------------
consensus_6523#0 CCGCGGGGTCAACGCAGCTGGCCGAGCTTGCCAGTGGATGAGTCAAGCGACCTCGTTTCG 60
consensus_6523#1 ACCTTAAGTTAAACCGTCGGTCTAGAGTTGAGTTGAGAACATTTGC-TGCGCGTGATAAA 114
consensus_6523#3 ------------------------------------------CCGC-GG-ACGCGTGGGA 16
consensus_6523#2 --------------------------------CCGATAGGGCTTAA-CGCAGAGAAGCGC 27
consensus_6523#0 AAGTCGGGCGAAAACAAAATGAAGGAAATTCCATGTCTGCGTATGTGTGTGCGTGTGCGT 120
*
consensus_6523#1 CCACCAACCCTGGTGAAAATGCC-CGTGGGAAGTGAAAAGATGAGTGTAGCAGCA---GG 170
consensus_6523#3 CCACCAACCCTGGGAAAACCCCCACGTGGGAAG-GAAAAGATGAG-GTAGCAGCA---GG 71
consensus_6523#2 GTGTGCAAATGGGTGCAATAACATGCTTTTCAGTACATAGAATACGACAGCAACATA-AG 86
consensus_6523#0 GTATGTGTAATGTTATGAAGAATTCCTTTGTACAGTGCGTGTTAGCTCCTGGGTATGTGT 180
* * * * * *
consensus_6523#1 AAAACTGTTTGGANAAACCGACAAAATCGACATCAAAACAAG---GCATCACTTGTTTAC 227
consensus_6523#3 AAAA-TGTTTGG-TAAACCGACAAAATCGACATCAAAAAAGGC--GCATCA-TTGTTTAA 126
consensus_6523#2 AAAGGGGATGAAGAAAAACAAAAAACCTGTCGATAAAACAAA-----ATTA--AAATTAT 139
consensus_6523#0 GTGTGTGTGAGGTGAAAACAAACAAATAAAAAAAAAAACAAGAAAAAATCA-TTACATAC 239
* *** * * ** **** * ** * **
consensus_6523#1 CATTTTGAAAAAACAAAGAAGATAAAAAACCGTAGCATCACGTTACCGGCCTGTTTGCAA 287
consensus_6523#3 CATTT-GAAAAAAAAAGAAGAAGAAAAAACCGTAGCATCGCGTTACCGGCCTGTTTGCAA 185
consensus_6523#2 CGC--------ACTAAAGTAGATGGGTATCAGT--TTTGATTGGATTGATTTGATGTCGG 189
consensus_6523#0 AACAAAAGAAAAGAAAAGAAAAGAAAATATTTAAAAACAAAACGAAAGACTTAAAAAGGC 299
* ** * * * *
consensus_6523#1 ATATTTTAAGTGTACGGGGTGNGCTGCAACAC------ACGTACAAAATCGTTGC--GTA 339
consensus_6523#3 ATATTTTAAGTGTACGGGGTGG-CGCCAACAC------ACGTACAAAATCGTTGCC-GTA 237
consensus_6523#2 ACAAAACAAATCACTAGAATAGACAGAAAAGC------ATTAGCAAAAGCAACAAACAAA 243
consensus_6523#0 GTAAAACGAGCGTAGGGCAGAGAATATAGAGCTTTTTTATATACAATTTTATGTTCCATT 359
* * * * * * ***
consensus_6523#1 CCAATGTATNGTGCAGT-TGACGC-CTGGACCGAGGAAGAATGTTTAACGCT-GTGCACA 396
consensus_6523#3 CCAATGT-TTGTGCAGT-TGACGC-C-GGACCGAGGAAGAATGTT-AACGCT-GTGCACA 291
consensus_6523#2 CAAACACACAAAGCACA-CAACAA-TTCTAACGAGATTG--TACTAAGAGAA-GCAGCTG 298
consensus_6523#0 TCCCCTCCCCCCCCATTGTAGTGCGCGATGGCGCAAAGAAATGTAAAGTGAAAGTAAAAA 419
** ** * * * *
consensus_6523#1 TACGGTGAACCATTATCCATAGGGCTTNACGCANGAGAAGCGCGTGTGCNAAATGGGTGC 456
consensus_6523#3 TACGGCGAACCACTATCCATAGGGCTTAACGCAG-AGAAGCGCA---------------- 334
consensus_6523#2 TAAAGCGAGACAGATCGCATTCGGATTAATTTAA-AGCAATTTGAATCTGATTT------ 351
consensus_6523#0 TCAAAGGGAACGCTACTACTACTACTACTGCTACTACTGCTACTACTAACATTCCAATTC 479
* * * * * * *
consensus_6523#1 ACATAACATGCTATCTCAGTACATAGAATACGACAG-AACAAAAGANAAGGGACTGGAGT 515
consensus_6523#3 --ATAACATGCT-TTTCAGTACATAGAATACGACAGCAACATAAGAAAGGGGA-TGGAGA 390
consensus_6523#2 --GTGCCAGCAACTTTTAACGC-TTGAAGGCGAACGTGTGTTGTAAAGTGTGCATGTGTG 408
consensus_6523#0 CAACGATTACTATAAAAAAGGCAACAAAGACTTTAAGGACACATGCAAACGTA-GATAGT 538
* * ** *
consensus_6523#1 CACCAACAAACCACAACCTGTCGATACAAACCANAATNTACCATCTATCGCA--CCAANN 573
consensus_6523#3 AA--AACAAAA---AACCTGTCGATAAAA--CAAAATTAA--AATTATCGCA--CTAAAG 439
consensus_6523#2 CATGTGTATGTGTGTGCGTGTGCGTGTATG-TGTAATGTTATGAAGAATTCC--TTTGTA 465
consensus_6523#0 AACTGTCCACTCTCAGTCTCTCTCGTCATTGTTTGTTTTTTTGTTTATCGTTTTCCTGGG 598
* * * * * *
consensus_6523#1 NAGNNAGCANTGCGGCTACTCA---GCACAGACTCNGGCCCTCCGAATCCCGAACGGCTA 630
consensus_6523#3 TAGATGGGTAT---------CA---GTTTTGATTGGATTGATTTGA-TGTCGGACAAAAC 486
consensus_6523#2 CAGTGCGTGTT---------AG---CTCCTGGGTATGTGTGTGTGTGTGAGGTGAAAACA 513
consensus_6523#0 TATTTCTCTGTTCTGCATTCCATTCATATCAAGCCAAGCGCTAGCTCTGTTCGGAACCAT 658
* * * *
consensus_6523#1 CGGGCACCACAAAGA---CCAAAC-ACTCAACCTTAC-CACCACTACGCACCAACCCACA 685
consensus_6523#3 AAATCACTAGAATAG---ACAAAA-A---AGCATTAG-CAAAAGCAACAAACAAACAAAC 538
consensus_6523#2 AACAAATAAAAAAAA---ACAAGA-AAAAATCATTACATACAACAAAAGAAAAGAAAAGA 569
consensus_6523#0 AATGTAATAGGGATATTTCCAAACGAGCGAATGTTAATCTCTGTCGTACTCTCCACATAT 718
* * *** * * ***
consensus_6523#1 ACGCCNCTGANGCAACAG--AGGCNANAANAACGCAAG--AAACGAAACAC--AACACCA 739
consensus_6523#3 ACACAAAGCACACAACAA--TTCTAACGAGATTGTACT--AAGAGAAGCA----GCTGTA 590
consensus_6523#2 AAAGAAAATATTTAAAAA--CAAAACGAAAGACTTAAA--AAGGCGTAAA---ACGAGCG 622
consensus_6523#0 ATCCTGTTTCCGTGTGCGCTTTGCCACACGAGTGCAATTTAGTGCAATCATCCGGGCCCG 778
* * * *
consensus_6523#1 CAAGCNANACAAANCCCAAACCT----ANCCGNAGAAATCATGCACCCAACCACCAAGGC 795
consensus_6523#3 AAGACGAGACAGATCGCATTCGG----ATTAATTTAAAGCAATT---------------- 630
consensus_6523#2 TAGGGCAGAGAATATAGAGCTTT----TTTATATACAATTTTATGTTCCATTTCCCCTCC 678
consensus_6523#0 CGGCCAGCGGAGCATTCAGTTCCTAGAGGCGGCATACATAAAACATGCTGACTTTAGTTT 838
* * *
consensus_6523#1 AGCCTGNNC-ACAAGCNGCCNCCNACATCNCCCTNTCCTGCGACTCAAC----------- 843
consensus_6523#3 ------------------------------------------------------------
consensus_6523#2 CCCCCCATT--------------------------------------------------- 687
consensus_6523#0 AGTGTACATGACCCGCCACTGTCTCGCTCTCTCTCTCTCTCTCTTTTATGCGCAACTGTA 898
consensus_6523#1 ------------------------------------------------------------
consensus_6523#3 ------------------------------------------------------------
consensus_6523#2 ------------------------------------------------------------
consensus_6523#0 CCGCGTAAGCGACCACGTGGAGCTAACCCTCTTTACCGCATGCTCCCGCCGCCACACTTT 958
consensus_6523#1 -------------------------------------
consensus_6523#3 -------------------------------------
consensus_6523#2 -------------------------------------
consensus_6523#0 CCCACGTGCAAACGCCGACTTTTCTCTGTGATCATCA 995
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||