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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1057 fasta sequence
[GGCCAGAATTCGGCACGATGGAGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAAACCTTCCTCTTCCCCATACACTTGAAAGCCCGGAACGGGGTTCCACGGAATTTTATTGTTTGGGTGCGGCAATGGGGTTGCGGTACCGGAACGGCCCAAGCAAAATTATTTCCCAATTCGGTGGGAACGGTTAAATTGGAAACACAGGTTGGTTGGCCTTACCATTGGAATTCAACCGGGAATTCCTTGGTATTGGGTTAAGGTGGAAAACGGAATTGAACTCTTTTCCCCAATTTTATCGGCCCGGGCCCACCAATTGGGGTAATTTGGGTTCCGGAATTTGGAAGAGCGGGTTCCTACCAACCGGTTTTTCCAGGCCCGGGAACTTAATTCACAAGTTTTCCAAATTTCGCCCAACCAATTTCCAGTTCCAAAGAACACAGCAGTTGGACGTTTCCCGGTTTTNATTTTTGGGACAAGGGCCGAATTTCCCNCCGAAATTTTCCGGACGAACCCCNAAAAGAGGGGCCATTAACAACGTTTCAAGTTCAAAACCCCAGGTCCGGTTCCCTTTGGGCAGTTTTTGAAGCCGCTTTCGTTCGTTCCAAAAATTTGGTTTTTCCAACTTGGGGGAGATTTTTGGTNACAAAGGGCGAGATANANAAAGGGAATTACCAGGGGAAGGCGGCCATTTTTAAGGGGGTTTCCCATTGGAATTTCCAACTTTCCGGAAAGGCGTTCCTTCCCCAATNGACCGGAGCGTTTTCTGTTACCCCCCTGAANGAAGAGAGAATTAACCATTTCCCCCCTTTGGAAGGGGGAAATTAATTTAGGCGGTTAGGGGTTTAAGGCCGNGNCAAGGGGGAACCGGGGGTCTTGCGCANATTTGGCACTAATTCCCAATTTCCGGGAAGAGGNATTTGGGGGCGCGGGACAAANAGACCTTTTTATAGGTTTNGGGGCCCAAAGTTCCGGG]
[+] EMBL BX468866 [GGCCAGAATTCGGCACGATGGAGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAAACCTTCCTCTTCCCCATACACTTGAAAGCCCGGAACGGGGTTCCACGGAATTTTATTGTTTGGGTGCGGCAATGGGGTTGCGGTACCGGAACGGCCCAAGCAAAATTATTTCCCAATTCGGTGGGAACGGTTAAATTGGAAACACAGGTTGGTTGGCCTTACCATTGGAATTCAACCGGGAATTCCTTGGTATTGGGTTAAGGTGGAAAACGGAATTGAACTCTTTTCCCCAATTTTATCGGCCCGGGCCCACCAATTGGGGTAATTTGGGTTCCGGAATTTGGAAGAGCGGGTTCCTACCAACCGGTTTTTCCAGGCCCGGGAACTTAATTCACAAGTTTTCCAAATTTCGCCCAACCAATTTCCAGTTCCAAAGAACACAGCAGTTGGACGTTTCCCGGTTTTNATTTTTGGGACAAGGGCCGAATTTCCCNCCGAAATTTTCCGGACGAACCCCNAAAAGAGGGGCCATTAACAACGTTTCAAGTTCAAAACCCCAGGTCCGGTTCCCTTTGGGCAGTTTTTGAAGCCGCTTTCGTTCGTTCCAAAAATTTGGTTTTTCCAACTTGGGGGAGATTTTTGGTNACAAAGGGCGAGATANANAAAGGGAATTACCAGGGGAAGGCGGCCATTTTTAAGGGGGTTTCCCATTGGAATTTCCAACTTTCCGGAAAGGCGTTCCTTCCCCAATNGACCGGAGCGTTTTCTGTTACCCCCCTGAANGAAGAGAGAATTAACCATTTCCCCCCTTTGGAAGGGGGAAATTAATTTAGGCGGTTAGGGGTTTAAGGCCGNGNCAAGGGGGAACCGGGGGTCTTGCGCANATTTGGCACTAATTCCCAATTTCCGGGAAGAGGNATTTGGGGGCGCGGGACAAANAGACCTTTTTATAGGTTTNGGGGCCCAAAGTTCCGGG]
consensusID : consensus_6535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 910 fasta sequence
[CCGCCCACGCGTCCGGTTTGCTTGTAGCGTCACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGATAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCGCTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACAGAGTTTCGGCCCGA--GCAATTCTAGTCCATCTCATATT-CG-CCCCTAGC----AAATTATTCTGTACAACGATTTACAACGTTGGGATAACAGACGCCACCGTACAATGGCTCACTTAAGAC-CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA-TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC--TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC-GCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGAT-TTATGTTGGTGCGCAT-GGGTGCGTACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGATCTGT-TGT-TAGT-GAACGATGACTCTTCCA-TTATCGCCGGNCACATGGTATTGGTCGGATNTGAGGGGTCTACACGTTCGCCGGACTATCACAATTTCAATCCCACGATTCCTCCACGAAAATGACTTCCGGGTATTT]
[+] EMBL BM653188 [CCGCCCACGCGTCCGGTTTGCTTGTAGCGTCACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGATAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCGCTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACAGAGTTTCGGCCCGA GCAATTCTAGTCCATCTCATATT CG CCCCTAGC AAATTATTCTGTACAACGATTTACAACGTTGGGATAACAGACGCCACCGTACAATGGCTCACTTAAGAC CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC GCATGGATTATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTAC ]
[+] EMBL BX623040 [ TCACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGATAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCGCTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACGGAGTTTCGGCCCGA GCAATTCTAGTCCATCTCATATT CG CCCCTAGC AAATTATTCTGTACCACGAGTTACAAGGTTGGGATAGCAGACGCCACCGTACAATGGCTCACTTAAGAC CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC GCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGAT TTATGTTGGTGCGCAT GGGTGCGTACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGATCTGT TGT TAGT GAACGATGACTCTTCCA TTATCGCCGGNCACATGGTA ]
[+] EMBL BM619251 [ ccgCAAACCACGGGCAGAGTCGAACGCGGTATTACAAAAAAAGCTGTGAGAATACATGATTAGAAATTCACTACAGAGTTTCGGCCCGA GCAATTCTAGTCCATCTCATATT CG CCCCTAGC AAATTATTCTGTACAACGATTTACAACGTTGGGATAACAGACGCCACCGTACAATGGCTCACTTAAGAC CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAA TTGAACGAAGTTCCCACCCGTATTACAGACGACCTAGCGGCCC TGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC GCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGAT TTATGTTGGTGCGCAT GGGTGCGTACGACGCCAGCAAATATTCCAT ]
[+] EMBL BX469161 [ gCAGA ATTCGCAGCGATNGNAATTCTAGT CATCTCATATTCCGCCCCCTAGCGTAAAAATTATTCTGTACCACGAGTTACAAGGTTGGGATAGCAGACGCCACCGTACAATGGCTCACTTAAGACACCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAATTTGAACGAAGTTCCCACCCGTATTACAGACGA CTAGCGGGCCTGTGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTCGGCATGGATGATCAATTTTTGGTGAATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGTGAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTTCCTCTTCCCCATACACTTGAAGCCGACGGTCCACGATATTATGTTGGTGCGCATAGGGTGCGTACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGATCTGTATGTATAGTAGAACGATGACTCTTCCAGTTATCGCCGGGCACATGGTATTGGTCGGATNTGAGGGGTCTACACGTTCGCCGGACTATCACAATTTCAATCCCACGATTCCTCCACGAAAATGACTTCCGGGTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6535#0 GGCCAGAATTCGGCACGATGGAGAAAAGACGAAAGAAAAACTCGACAACTATTACACGGT 60
consensus_6535#1 ------------------------------------------------------------
consensus_6535#0 GAAGACTGCGATACCGGAATTTTTCGACAACCGTGACCCAGACAATGCATCGCTGCAGAG 120
consensus_6535#1 ------------------------------------------------------------
consensus_6535#0 CTACATGTCGTTCGGTGTCAAACCTTCCTCTTCCCCATACACTTGAAAGCCCGGAACGGG 180
consensus_6535#1 --------------------------------------------------CCGCCCACGC 10
*** *
consensus_6535#0 GTTCCACGGAATTTTATTGTTTGGGTGCGGCAATGGGGTTGC-GGTACCGGAACGGCCCA 239
consensus_6535#1 GTCCGGTTTGCTTGTAGCGTC-ACGTCTGGCGTTGAGCGAGCTGGTGACAAAACGACCGA 69
** * ** ** ** ** *** ** * ** *** * **** ** *
consensus_6535#0 AGCAAAATTATTTCCCAATTCGGTGGGAACGGTTAAATTGGAAACACAGGTTGGTTGGCC 299
consensus_6535#1 TAGATAACTTCAACGCAAACCGATGGGTGGAGTGCATCCAATCAACGATTTTGGGTTGCG 129
* ** * * *** ** **** ** * * * **** * **
consensus_6535#0 TTACCATTGGAATTCA-ACCGGGAATTCC-TTGGTATTGGGTTAAGGTGGAAAACGGAAT 357
consensus_6535#1 CTCTGCGTGAAACACACGCCGCGTGCTTAATCAGTGTTCAACAAA--CCACGGGCAGAGT 187
* ** ** ** *** * * * ** ** ** * ** *
consensus_6535#0 TGAACTCTTTTCCCCAATTTTATCGGCCCGGGCCCACCAATTGGGGTAATTTGGGTTCCG 417
consensus_6535#1 CGAACGCGGTATTACAAAAAAAGCTGTGAGAATACAT-GATTAGA--AATTCA--CTACA 242
**** * * *** * * * * ** *** * **** * *
consensus_6535#0 GAATTTGGAAGAGCGGGTTCCTACCAACCGGTTTTTCCAGGCCCGGGAACTTAATTC--A 475
consensus_6535#1 GAGTTTCGGCCCGAGCAATTCTAGTCCATCTCATATTCGCCCCTAGCAAATTATTCTGTA 302
** *** * * * * *** * * * ** * ** *** * *
consensus_6535#0 CAA-GTTTTCCAAATTTCGCCCAACCAATTTCCAGTTCCAAAGAACACAGCAGTTGGACG 534
consensus_6535#1 CAACGATTTACAACGTTGGGATAACAGACGCCA----CCGTACAATGGCTCACTTAAGAC 358
*** * *** *** ** * *** * * ** * ** ** **
consensus_6535#0 TTTCCCGGTTTTNATTTTTGGGACAAGGGCCGAATTTCCCNCCGAAATTTTCCGGACGAA 594
consensus_6535#1 CCCTGGTGCCGGAGCTGGCGGAAAAAGCACGCAACGAATTGAACGAAGTTCCCACCCGTA 418
* * ** * *** * ** ** ** ** ** *
consensus_6535#0 CCCCNAAAAGAGGGGCCATTAACAACGTTTCAAGTTCAAAACC-CCAGGTCCGGTTCCCT 653
consensus_6535#1 TTACAGACGACCTAGCGGCCCTGAAAGCTTGGCTGCTGAAGCAGCCCCATCTGAACCCTC 478
* * ** ** * ** ** * ** ** * **
consensus_6535#0 T------TGGGCAGTTTTTGAAGCCGCTTTCGTTCGTTCCAAAAATTTGGTTTTTCCAAC 707
consensus_6535#1 GCATGGATGATCAATTTTTGGTGA-ATTTTCTGCGAGGCTGCAAGTATAGTCTGGAAAAG 537
** ** ****** * **** * ** * * ** * **
consensus_6535#0 TTGGGGGAGATTTTTGGTNACAAAGGGCGAGATANANAAAGGGAATTACCAGGGGAA--- 764
consensus_6535#1 ACGAAAGAAAAACTCGACAACTATTA-CACGGTGAAGACTGCGA--TACCGGAATTTTTC 594
* ** * * * ** * * * * * * * ** **** *
consensus_6535#0 GGCGGCCATTTTTAAGGGGGTTTCCCATTG--GAATTTCCAACTTTCCGGAA--AGGCGT 820
consensus_6535#1 GACAACCGTGACCCAGACAATGCATCGCTGCAGAGCTACATGTCGTTCGGTGTCAACCTT 654
* * ** * ** * * ** ** * * * *** * * *
consensus_6535#0 TCCTTCCCCAATNGACCGGAG------------CGTTTTCTGTTACCCCCC-TGAANGAA 867
consensus_6535#1 CCTCTTCCCCATACACTTGAAGCCGACGGTCCACGATTTATGTTGGTGCGCATGGGTGCG 714
* * *** ** ** ** ** *** **** * * ** *
consensus_6535#0 GAGAGAATTAACCATTTCCCCCCTTTGGAAGGGG-GAAATTAATTTAGGCGGTTAGGGGT 926
consensus_6535#1 TACGACGCCAGCAAATATTCCATCGTGGACGTAATGAAAGTGTGCTACATGATCACGGAT 774
* * * * * ** **** * **** * ** * * * ** *
consensus_6535#0 TTAAGGCCGNGNCAAGGGGGAACCGGGGGTCTTGC-GCANATTTGGCACTAATTCCCAAT 985
consensus_6535#1 CTGTTGTTAGTGAACGATGACTCTTCCATTATCGCCGGNCACATGGTATTGGT-CGGATN 833
* * * * * * * * ** * * *** * * * * *
consensus_6535#0 TTCCGGGAAGAGGNATTTGGGGGCGCGGGACAAANAGACCTTTTTATAGGTTTNGGGGCC 1045
consensus_6535#1 TGAGGGGTCTACACGTTCGCCGGACTATCACAATTTCAATCCCACGATTCCTCCACGAAA 893
* *** * ** * ** **** * * *
consensus_6535#0 CAAAGTTCCGGG----- 1057
consensus_6535#1 ATGACTTCCGGGTATTT 910
* *******
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||