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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 961 fasta sequence
[CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGAC-TTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCCG]
[+] EMBL BM637619 [CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGGTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAATAACAATCAAAATTTAACAGTGACAATGCATGTGCAGTGGATTTCATTCAGCTTGGTGGTGTTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCCATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGGCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTCGGTCCGCTCGGCTTTCTCTCCACCGGTACCGCC ]
[+] EMBL BM631074 [ ccgGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATAC ]
[+] EMBL CNS08U0A [ TCTTGGAGGTGTTTGTTGTTGCTGGTGGTAGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGC GAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGC GTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGAC TTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCCG]
[+] EMBL CNS08S8P [ TCTTGGAGGTGTTTGTTGTTGCTGGTGGTAGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGC GAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTTTTTGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAAAGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGACTTTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAACCGATGGA ]
consensusID : consensus_6544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence
[GCAAGATCCCCCGAGGTTNACATGCATGTGCATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCG]
[+] EMBL AL695290 [GCAAGATCCCCCGAGGTTNACATGCATGTGCATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6544#0 CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGT 60
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 GGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATG 120
consensus_6544#1 ------------------------GCAAGATCCCCCGAGGTTNAC--------ATGCATG 28
**** * * * ** * *******
consensus_6544#0 TGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACA 180
consensus_6544#1 TGCA-TGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACA 87
**** *******************************************************
consensus_6544#0 GTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGG 240
consensus_6544#1 GTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGG 147
************************************************************
consensus_6544#0 TACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACA 300
consensus_6544#1 TACAAGGAACACGGGGCCG----------------------------------------- 166
*******************
consensus_6544#0 TCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAAC 360
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 CGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGA 420
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 ACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAA 480
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 ATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGT 540
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 CCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCC 600
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 AGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACA 660
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 TGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCG 720
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 GCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGC 780
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 CCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGG 840
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 GTCCATCTTTTCGCCCTGGGCGACTTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGC 900
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 AAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCC 960
consensus_6544#1 ------------------------------------------------------------
consensus_6544#0 G 961
consensus_6544#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||