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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1368 fasta sequence
[ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCC-TTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGGTGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTTGATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAAAACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTGGCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTAGTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTGGTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA]
[+] EMBL CNS08EJM [ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCC TTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGGTGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTTGATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAAAACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTGGCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTAGTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTGGTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAA ]
[+] EMBL CNS08X7R [ TGGATTGTTGTTGTTGTTGATGTTGTTTTTTCCTTGTTTTCCTTTGGCGAGAGATGAAGTATGAACCATGAAACGTGTTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATACACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGC ]
[-] EMBL CNS08EJN [ tagaTTAGTAGGATTTTGGATTCTTAAAGGGAGGAGAGAGGAAAGAGGAATAAACGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGTTGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA]
[-] EMBL CNS08X7S [ TTGGGCGAGCCAAACAATAGGGGTAGAAAGGGAAACAGATTGGAAAAGTAAATCAC TTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCCCCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAG TAATcc ]
consensusID : consensus_6545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[AACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAAGAAAATAATGAAAAAATAAAGAAATAANCAGAGATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTAAAAAAAAAGAGACAAAACAAAACAACAAAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAGGAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC]
[-] EMBL BX627691 [AACTATAGCGCAAGCAAAGATACACTTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTGCAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACACAAGAAAATAATGAAAAAATAAAGAAATAANCAGAGATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATGTGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCACTTTTTCCACCGAAACAAATGAATTAAAAAAAAAGAGACAAAACAAAACAACAAAAGAAGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAGGAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATATACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGGAAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATACACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6545#0 ACAGTTAAAAACACCATACTAACCATAAGTGATTAGAATGAAATTGGATTGTTGTTGTTG 60
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 TTGATGTTGTTTTTTCCTTGTTTTCCTTGGCGAGAGATGAAGTATGAACCATGAAACGTG 120
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 TTTCAGCTGTGCAAAACTTTCATCCTTCATAAATCCCTTTTGCCTCATCGACTGATAATA 180
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 CACCGCTCGCTTTCGTTTTCGAACCGATCAACGGGCATCACCCCACTGGTGGTGGGCCGG 240
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 TGATCAAACTCTTGTACATTAACGAATCGGATCATCCGATGTGGTGTCCGCGCGGCGCTT 300
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 GATAGCGTTGCATAGCGAGCGTGGTGCCCACGGGTGTCCGAGGAGGAATTAAAAAAAAAA 360
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 AACGACAGTATCTTATTGTGACACAACACACATGTGATTGAAGCGATCGAGGGACAGCTG 420
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 GCGGGAGAGGGAGGAGCGGCAGTGGTGCCACCCCGACCCTCTCCCCCATAGCAAGCCCTA 480
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 GTGTTTCACTTTCCTATCACCTTTTTGTAGAATTAACGTTGGACGGTGGCTCTGGTACTG 540
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 GTTGGGTCGCTTCGTAGGCTTTTGGATTCTTCCAGGGAGGAGAGAGGAAAGAGGAATAAA 600
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 CGCAAGAGCTAGAAGCGGAATTTAAAAAAAAAGAAAGGATTTTAGGGTTGGTTAGTTGGT 660
consensus_6545#1 ------------------------------------------------------------
consensus_6545#0 TGGGGCAGAAGTTGATACATACAAACATTAAACAAAACTATAGCGCAACAAAAGATACAC 720
consensus_6545#1 -----------------------------------AACTATAGCGCAAGCAAAGATACAC 25
************* **********
consensus_6545#0 TTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACGCTCTTG 780
consensus_6545#1 TTATTGATTATACTAACTGTGTAAGGTGTTTCATAGTATAATAGTGGCTACACACTCTTG 85
***************************************************** ******
consensus_6545#0 CAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACA 840
consensus_6545#1 CAACTAAGAGATCGATTATCAAAACATAAAAGAAGCGAAGTGAGTGAAAGTGGTAAAACA 145
************************************************************
consensus_6545#0 CAATAAGAAATAAACAGAGAAAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGA 900
consensus_6545#1 CAAGAA------AATAATGAAAAA-------------------ATAAAGAAATAANCAGA 180
*** ** ** * **** * * * *** * * ***
consensus_6545#0 GAGAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG 960
consensus_6545#1 GATAGAGAGAGATGAAGCAGCAAAAGAAACAGGAAATCCACTGCAGCTATCGTATTAATG 240
** *********************************************************
consensus_6545#0 TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA 1020
consensus_6545#1 TGTAAACGGATAGATATTTGAAATAATTGATATGAATGAACCGCTACATGAAGTTACCCA 300
************************************************************
consensus_6545#0 CTTTTTCCACCGAAACAAATGAATTATAAAAAAGAAGAGACAAAACAAAACAACACAAGA 1080
consensus_6545#1 CTTTTTCCACCGAAACAAATGAATT--AAAAAAAAAGAGACAAAACAAAACAACAAAAGA 358
************************* ****** ********************* ****
consensus_6545#0 AGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAACAATAGGGGTAGAAAG 1140
consensus_6545#1 AGAAAGGCTCACGTCGAACGCTTTAACAATTTGGACGAGCCAAAGAATAGGGGTAGAAAG 418
******************************************** ***************
consensus_6545#0 GGAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATAT 1200
consensus_6545#1 GAAAACAGATTGGAAAAGTAAATCACGTTGCACGTTGTTTGTAAAAGTATGCGCAAATAT 478
* **********************************************************
consensus_6545#0 ACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGG 1260
consensus_6545#1 ACGTCTCCCATCTCCCCCTCCCTTTTGGCGTTAAATCCACCAAACAAACAGGACAAATGG 538
************************************************************
consensus_6545#0 AAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAAAACACACATA 1320
consensus_6545#1 AAAACAAGATGGTTGTTGTTGTGATTGAAAAGTAAAAACAAAGAAACAAACACACACATA 598
************************************************** *********
consensus_6545#0 CACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATTGTGA 1368
consensus_6545#1 CACACCGAAACATTAAACAAGTATAAAGAGAATAAAAGCTAATGC--- 643
*******************************************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||